The spin motive force driven by the dynamics of the skyrmion structure formed in a nanomagnetic disk is numerically investigated. Due to the existence of the magnetic structure along the disk edge, the collective mode of the magnetization is modified from that of the bulk skyrmion lattice obtained by using the periodic boundary condition. For a single-skyrmion disk, the dynamics of the skyrmion core and the edge magnetization induce the spin motive force, and a measurable AC voltage is obtained by two probes on the disk. For a multi-skyrmions disk, the phase-locked collective mode of skyrmions is found in the lowest resonant frequency where the amplitude of the AC voltage is enhanced by the cascade effect of the spin motive force. We also investigate the effect of the Rashba spin-orbit coupling on the spin motive force.