Ectomycorrhizal Fungal Community Composition Research Articles

Abiotic environmental factors drive the diversity, compositional dynamics and habitat preference of ectomycorrhizal fungi in Pannonian forest types.

Ectomycorrhizal (ECM) fungi are among the most diverse and dominant fungal groups in temperate forests and are crucial for ecosystem functioning of forests and their resilience toward disturbance. We carried out DNA metabarcoding of ECM fungi from soil samples taken at 62 sites in the Bükk Mountains in northern Hungary. The selected sampling sites represent the characteristic Pannonian forest types distributed along elevation (i.e., temperature), pH and slope aspect gradients. We compared richness and community composition of ECM fungi among forest types and explored relationships among environmental variables and ECM fungal alpha and beta diversity. The DNA sequence data generated in this study indicated strong correlations between fungal community composition and environmental variables, particularly with pH and soil moisture, with many ECM fungi showing preference for specific zonal, topographic or edaphic forest types. Several ECM fungal genera showed significant differences in richness among forest types and exhibited strong compositional differences mostly driven by differences in environmental factors. Despite the relatively high proportions of compositional variance explained by the tested environmental variables, a large proportion of the compositional variance remained unexplained, indicating that both niche (environmental filtering) and neutral (stochastic) processes shape ECM fungal community composition at landscape level. Our work provides unprecedented insights into the diversity, landscape-level distribution, and habitat preferences of ECM fungi in the Pannonian forests of Northern Hungary.

Soil nutrients and plant diversity affect ectomycorrhizal fungal community structure and functional traits across three subalpine coniferous forests.

The symbiotic relationship between ectomycorrhizal fungi (EMF) and the roots of host plants is significantly important in regulating the health and stability of ecosystems, especially of those such as the climate warming affected subalpine forest ecosystems. Therefore, from the coniferous forest systems located in the Southern Qinghai-Tibetan Plateau, root tips from three forest tree species: Pinus wallichiana, Abies spectabilis and Picea spinulosa, were collected to look for the local causes of EMF community composition and diversity patterns. The EMF colonization rate, diversity and taxonomic community structure were determined by morphotyping and sanger sequencing of the fungal ITS gene from the root tip samples. Soil exploration types were identified based on the morphologies of the ectomycorrhizas, coupled with soil properties analysis and plant diversity survey. Contrasting patterns of EMF community and functional diversity were found across the studied three forests types dominated by different coniferous tree species. In terms of associations between soil and EMF properties, the total phosphorus (TP) and nitrate (NO3−) contents in soil negatively correlated with the colonization rate and the Shannon diversity index of EMF in contrast to the positive relationship between TP and EMF richness. The soil total nitrogen (TN), ammonium (NH4+) and plant diversity together caused 57.6% of the total variations in the EMF taxonomic community structure at the three investigated forest systems. Whereas based on the soil exploration types alone, NH4+ and TN explained 74.2% of variance in the EMF community structures. Overall, the findings of this study leverage our understanding of EMF dynamics and local influencing factors in coniferous forests dominated by different tree species within the subalpine climatic zone.

Long-term nitrogen-addition-induced shifts in the ectomycorrhizal fungal community are associated with changes in fine root traits and soil properties in a mixed Pinus koraiensis forest

Nitrogen (N) deposition has marked effects on the structure and function of global forest ecosystems. Many forest tree species rely upon a symbiotic association with ectomycorrhizal (ECM) fungi to enhance nutrient acquisition, which affects nutrient and carbon (C) dynamics in forest ecosystems. A better understanding of the characteristics of ECM fungal diversity and composition and their primary determinants under N deposition will help us to identify the mechanisms underlying N-induced effects on forest nutrient and C cycling. In the present study, we explored the effects of long-term N addition (10 years) on the diversity and community composition of ECM fungi identified from fine roots of Corylus mandshurica, Pinus koraiensis and Tilia amurensis in a mixed temperate forest on Changbai Mountain in north-eastern China. We observed that N addition decreased the Shannon and Simpson indices of the ECM fungal community colonizing C. mandshurica and T. amurensis. Neither the Chao1 index nor the observed species richness of the ECM fungal community colonizing the three species was impacted by N addition. Nitrogen addition significantly decreased the fine root and stele diameter of C. mandshurica, and it significantly decreased the cortical thickness of fine roots of both P. koraiensis and T. amurensis. Nitrogen addition had a consistently negative effect on the mycorrhizal colonization of fine roots, but it did not affect the branching intensity of fine roots of the three tree species. Nitrogen addition altered the ECM fungal community composition, which was closely associated with fine root traits, such as mycorrhizal colonization, and edaphic factors, such as soil pH, soil total N concentration and soil CN ratio. An altered ECM fungal community composition was accompanied by shifts in the nutrient acquisition ability, as characterized by exploration types of ECM fungi. These findings have important implications for a better understanding of the effects of a changing ECM fungal community on the C and N cycling of forest ecosystems under increasing N deposition.

Soil transfers from intact to disturbed boreal forests neither alter ectomycorrhizal fungal communities nor improve pine seedling performance

Abstract Forest disturbances can alter mycorrhizal fungal communities with consequences for subsequent plant establishment and growth. One possible mitigation strategy to promote forest recovery following disturbances is inoculation with soil from late‐successional forests. However, whether these soil transfers change the composition of resident fungal communities and how seedling growth responds to such transfers is unknown. To test whether soil transfers can mitigate disturbance‐mediated impacts on ectomycorrhizal fungal (EMF) communities, we transferred soils containing fungal inoculum collected from conspecific late‐successional forests into stands disturbed by wildfire, mountain pine beetle outbreak, clear‐cut logging or salvage logging. Afterward, lodgepole pine seeds were sown to measure germination, establishment and growth of seedlings, and to characterize root‐associated and soil EMF communities by sequencing the ITS1 rDNA region. Despite evidence that soil inocula contained viable EMF communities, transfers did not impact the root‐associated or soil EMF community composition, or seed germination, seedling establishment and growth. Resident EMF community composition remained unchanged upon transfers of fungi from late‐stage successional forests, and disturbance type singularly explained the EMF community composition associated with roots and soils. Ectomycorrhizal fungal taxa typically associated with mature pine forests were particularly abundant on roots of seedlings growing in plots impacted by beetle outbreak, while ‘early‐stage’ EMF taxa were associated with seedlings growing in wildfire and logging disturbances. Synthesis and applications. Following disturbances, soil and root‐associated EMF exhibit high functional redundancy, as seedling performance did not vary with differences in EMF community composition across disturbance types. Our findings suggest that soil transfers are unlikely to be an effective strategy in these stands and may be better targeted to highly degraded forests. The presence and abundance of EMF in disturbed forests should be assessed before committing to soil transfers as part of restoration.

Changes in Rhizosphere Soil Fungal Communities of Pinus tabuliformis Plantations at Different Development Stages on the Loess Plateau.

The soil fungal community is an important factor in the forest ecosystems, and a better understanding of its composition and dynamic changes will contribute to the maintenance, preservation, and sustainable development of the forest ecosystems. Pinus tabuliformis has been widely planted for local ecological restoration on the Loess Plateau in China in recent decades. However, these plantations have been degraded to different degrees with increasing stand age. Hence, we tried to find the possible causes for the plantation degradation by analyzing soil environmental changes and soil fungal community composition at different stand ages. We collected rhizosphere soil samples from young (10-year-old), middle-aged (20-year-old), and near-mature (30-year-old) P. tabuliformis plantations in this region and characterized their soil properties and soil fungal community diversity and composition. Our results showed that with increasing stand age, the contents of organic carbon, ammonium nitrogen (AN) and nitrate nitrogen (NN) in the soil increased significantly, while the content of available phosphorus (AP) decreased significantly. The main factors affecting the composition of the soil fungal community were the contents of AP, AN, and NN in the soil. In addition, the genus Suillus was the dominant ectomycorrhizal (ECM) fungus in all periods of P. tabuliformis plantations in this region. The results of structural equation modeling showed that the community composition of ECM fungi was significantly correlated with stand age, soil NN, and AP contents, and that of pathogenic (PAG) fungi was significantly correlated with soil AN and AP contents. The decrease in the relative abundance of ECM fungi and the increase in the relative abundance of PAG fungi would exacerbate the degradation of P. tabulaeformis plantation. Our results illustrated that the content of soil AP is not only an important factor limiting the development of plantations, but it also significantly affects the community composition of soil fungi in the rhizosphere of the P. tabuliformis plantation. This study provides a novel insight into the degradation of P. tabuliformis plantations and builds a solid foundation for their subsequent management, restoration, and sustainable development on the Loess Plateau of China.

Ectomycorrhizal fungal communities of Swiss stone pine (Pinus cembra) depend on climate and tree age in natural forests of the Alps

Background and AimsPinus cembra represent a typical and important tree species growing in European subalpine and alpine habitats. The ectomycorrhizal (ECM) fungal communities associated to this tree under natural conditions are largely unknown.MethodsIn this study, we investigated the ECM fungal abundance and composition at four high-altitude sites (two northern-exposed and two southern-exposed habitats) in South Tyrol (Italy), and included also two different age classes of P. cembra. The ECM partners were characterized morphologically, and identified by rDNA ITS sequence analysis.ResultsThe degree of mycorrhization in adult P. cembra was typically 100% in these natural habitats, with a total species diversity of 20 ECM species. The four high-altitude sites were similar concerning their species richness and mycobiont diversity, but they differed significantly in ECM species composition. Young P. cembra had a mycorrhization degree of 100% and a total of 10 species were observed. All mycorrhizal partners of naturally regenerated young P. cembra were only detected in one specific location, with the exception of Cenococcum sp. and Amphinema sp. which were detected at two sites. Young trees harbour a distinct ectomycorrhizal fungal diversity, which is clearly lower than the diversity detected in adult P. cembra trees. The P. cembra bolete (Suillus plorans) is the most important symbiotic partner of P. cembra at Southern Tyrolean high-altitude sites and is known for its strict, species-specific host association.ConclusionsThe ectomycorrhizal fungal community composition strongly depends on geographic region and on the slope exposure (north or south) of the site.

Changes in Soil Ectomycorrhizal Fungi Community in Oak Forests along the Urban–Rural Gradient

The ectomycorrhizal fungi communities of forests are closely correlated with forest health and ecosystem functions. To investigate the structure and composition of ectomycorrhizal fungi communities in oak forest soil and their driving factors along the urban–rural gradient, we set up a Quercus acutissima forest transect and collected samples from the center to the edge of Jinan city (urban, suburban, rural). The results showed that the ectomycorrhizal fungal community composition at the phyla level mainly included Basidiomycota and Ascomycota in three sites. At the genus level, the community compositions of ectomycorrhizal fungi, along the urban–rural gradient, exhibited significant differences. Inocybe, Russula, Scleroderma, Tomentella, Amanita and Tuber were the dominant genera in these Quercus acutissima forests. Additionally, the diversity of ectomycorrhizal fungi was the highest in rural Quercus acutissima forest, followed by urban and suburban areas. Key ectomycorrhizal fungi species, such as Tuber, Russula and Sordariales, were identified among three forests. We also found that pH, soil organic matter and ammonium nitrogen were the main driving factors of the differences in ectomycorrhizal fungi community composition and diversity along the urban–rural gradient. Overall, the differences in composition and diversity in urban–rural gradient forest were driven by the differences in soil physicochemical properties resulting from the forest location.

Long-term soil warming alters fine root dynamics and morphology, and their ectomycorrhizal fungal community in a temperate forest soil.

Climate warming is predicted to affect temperate forests severely, but the response of fine roots, key to plant nutrition, water uptake, soil carbon, and nutrient cycling is unclear. Understanding how fine roots will respond to increasing temperature is a prerequisite for predicting the functioning of forests in a warmer climate. We studied the response of fine roots and their ectomycorrhizal (EcM) fungal and root-associated bacterial communities to soil warming by 4°C in a mixed spruce-beech forest in the Austrian Limestone Alps after 8 and 14years of soil warming, respectively. Fine root biomass (FRB) and fine root production were 17% and 128% higher in the warmed plots, respectively, after 14years. The increase in FRB (13%) was not significant after 8years of treatment, whereas specific root length, specific root area, and root tip density were significantly higher in warmed plots at both sampling occasions. Soil warming did not affect EcM exploration types and diversity, but changed their community composition, with an increase in the relative abundance of Cenoccocum at 0-10cm soil depth, a drought-stress-tolerant genus, and an increase in short- and long-distance exploration types like Sebacina and Boletus at 10-20cm soil depth. Warming increased the root-associated bacterial diversity but did not affect their community composition. Soil warming did not affect nutrient concentrations of fine roots, though we found indications of limited soil phosphorus (P) and potassium (K) availability. Our findings suggest that, in the studied ecosystem, global warming could persistently increase soil carbon inputs due to accelerated fine root growth and turnover, and could simultaneously alter fine root morphology and EcM fungal community composition toward improved nutrient foraging.

Mycorrhizal Fungi Associated With Juniper and Oak Seedlings Along a Disturbance Gradient in Central Mexico

Competition for resources between arbuscular mycorrhizal (AM) and ectomycorrhizal (ECM) plants can alter belowground mycorrhizal communities, but few studies have investigated host effects on both AM and ECM communities. In Central Mexico, the AM plant Juniperus deppeana is frequently used for reforesting areas affected by soil erosion, while the surrounding native forests are dominated by ECM oak trees. Oaks are capable of associating with both AM and ECM fungi during part of their life cycle (a feature known as dual mycorrhization) but it is unclear whether junipers possess such ability. To assess how juniper planting may affect belowground fungal interactions with oaks, we investigated mycorrhizal associations in J. deppeana and Quercus rugosa seedlings along a disturbance gradient: a native oak forest, a mixed Juniperus-Quercus population in secondary vegetation and a juniper site severely degraded by mining extraction. We measured root colonization and identified fungal communities using soil and root meta-barcoding of the ITS2 rDNA region. ECM fungal community composition was strongly affected by disturbance (regardless of host), while the community composition of AM fungi was mostly host-dependent, with a higher AM fungal richness in J. deppeana. Importantly, the fungal communities associated with Q. rugosa seedlings significantly changed in the vicinity of juniper trees, while those of J. deppeana seedlings were not affected by the presence of oak trees. Even though ECM fungal richness was higher in Q. rugosa and in the native forest, we detected a variety of ECM fungi associated exclusively with J. deppeana seedlings, suggesting that this plant species may be colonized by ECM fungi. Our results indicate that J. deppeana can alter ECM native fungal communities, with implications for its use in reforestation of mixed oak forests.

Host phylogeny is the primary determinant of ectomycorrhizal fungal community composition in the permafrost ecosystem of eastern Siberia at a regional scale

Ectomycorrhizal (EM) fungal communities have been studied worldwide; however, those in the very cold and dry continental climate zone of northern Eurasia remain understudied. We investigated EM fungal community structure on plant roots and its determinants in eastern Siberia. We identified 291 EM fungal taxa belonging to 37 fungal genera from nine sites spanning 2100 km. In a variation partitioning analysis, host plant phylogeny was the primary factor that explained variation in fungal community composition, followed by spatial distance, soil, and climate. Host specificity and preference were attributed to differences in EM fungal community composition among host plants. The EM fungal community on Larix cajanderi, the dominant canopy tree in the region, was characterized by a high proportion of Suillus and Rhizopogon species. This implies that these specialist fungal symbionts have a close ecological relationship with pioneer Larix trees to adapt to the harsh continental climate of Siberia.

Effects of Resin Tapping on Ectomycorrhizal Fungal Community Composition and Structure of Pinus Massoniana in Subtropical Mountain Forest Ecosystems

Effects of Resin Tapping on Ectomycorrhizal Fungal Community Composition and Structure of Pinus Massoniana in Subtropical Mountain Forest Ecosystems

Ectomycorrhizal fungal decay traits along a soil nitrogen gradient

The extent to which ectomycorrhizal (ECM) fungi decay soil organic matter (SOM) has implications for accurately predicting forest ecosystem response to climate change. Investigating the distribution of gene traits associated with SOM decay among ectomycorrhizal fungal communities could improve understanding of SOM dynamics and plant nutrition. We hypothesized that soil inorganic nitrogen (N) availability structures the distribution of ECM fungal genes associated with SOM decay and, specifically, that ECM fungal communities occurring in inorganic N-poor soils have greater SOM decay potential. To test this hypothesis, we paired amplicon and shotgun metagenomic sequencing of 60 ECM fungal communities associating with Quercus rubra along a natural soil inorganic N gradient. Ectomycorrhizal fungal communities occurring in low inorganic N soils were enriched in gene families involved in the decay of lignin, cellulose, and chitin. Ectomycorrhizal fungal community composition was the strongest driver of shifts in metagenomic estimates of fungal decay potential. Our study simultaneously illuminates the identity of key ECM fungal taxa and gene families potentially involved in the decay of SOM, and we link rhizomorphic and medium-distance hyphal morphologies with enhanced SOM decay potential. Coupled shifts in ECM fungal community composition and community-level decay gene frequencies are consistent with outcomes of trait-mediated community assembly processes.

Forest management effects on the ectomycorrhizal macromycete community in tropical montane forests in Mexico

While forest management impacts the ectomycorrhizal fungi (EMF) community, most of the evidence regarding such effects has been obtained from temperate forests of the Northern Hemisphere and little is known of their prevalence in highly diverse tropical habitats. This study analyzes the responses of the EMF community in managed tropical montane forests in the southern Mexican state of Chiapas. EMF community composition and diversity were evaluated over a 2-year period along a gradient of structural and microclimatic conditions of the forest associated with the stages of a cycle of silvicultural practices (R = release cutting, T = thinning, and F = final regeneration cutting), as well as in a mid-successional unmanaged forest (UF) as a reference system. The silvicultural practices involve varying intensities of tree harvesting (≈ 20% in T to ≈ 80% in F). It is hypothesized that: (1) diversity and composition of EMF communities are influenced by changes in forest conditions, principally as a result of canopy cover alteration due to forest management, and (2) late forest successional conditions are associated to more diverse EMF communities, while more intensive silvicultural practices reduce their diversity. A total of 75 EMF species were recorded. Diversity analysis using Hill numbers showed a close relationship between diversity and forest conditions: total species richness, 0D = 5.7 ± 0.6 in F up to 11.7 ± 1.3 in UF; richness of abundant species, 1D = 4.1 ± 0.4 in F up to 7.5 ± 0.4 in UF; richness of very abundant species 2D = 3.3 ± 0.3 in R up to 5.5 ± 0.3 in UF. Canopy cover (9.8 ± 4% in F and 80.6 ± 5% in UF) was the main factor affecting EMF diversity, mainly due to its influence on herbaceous cover, tree species richness (path analysis, R2 = 0.32; p < 0.05), and microclimatic variables. Turnover of the most abundant EMF species from the most intensive management practice towards the later successional forest conditions was observed. Late successional conditions allow for maintenance of more diverse EMF communities, while more intensive practices reduce their diversity (p < 0.05, in both cases). Rare fungal species appear to be more vulnerable to highly intensive management, and account for most of the EMF diversity in UF. The results indicate the importance of preserving relatively undisturbed species-rich forest stands near intensively managed stands in order to maintain biological integrity of the EMF community and ecosystem functioning in tropical montane forests.

Soil fertility controls ectomycorrhizal mycelial traits in alpine forests receiving nitrogen deposition

Anthropogenic nitrogen (N) deposition is known to profoundly alter the dynamics of mycelial traits of ectomycorrhizal (ECM) fungi in forest ecosystems. The site-specific change in mycelial traits in forests receiving N deposition led us to hypothesize that growth and functional traits of ECM mycelia are controlled by soil nutrient availability in these forests. In this study, we conducted a N fertilization experiment in two alpine forests (Picea asperata Mast. and Pinus armandii Franch.) on the eastern Tibetan Plateau, China, to assess the responses of mycelial growth traits (biomass, production, density and turnover) and functional traits (exploration type and hydrophobicity) to N addition. We quantified the turnover and production of mycelia by determining mycelial biomass in sequentially harvested in-growth mesh bags and by applying mathematical models. We also captured the changes in mycelium exploration type and hydrophobicity by characterizing the ECM fungal community composition. Nitrogen addition promoted mycelial growth, with 79% more mycelial production, 39% greater biomass, and 73% higher density in the P. armandii stand with lower soil N availability (18 mg mineral N kg−1), but N addition repressed the mycelial growth in the P. asperata stand with higher soil N availability (30 mg mineral N kg−1). Additionally, N deposition increased the abundance of genera belonging to ‘Contact-Short’ and ‘Contact-Medium’ explorers and reduced that of ‘Medium-Long’ explorers in the P. armandii stand. N deposition had opposite effect on mycelial functional traits in the P. asperata stand. Collectively, this confirms that the responses of mycelial dynamics to N deposition in forests largely depend on native soil nutrient availability.

Long-term nitrogen addition does not sustain host tree stem radial growth but doubles the abundance of high-biomass ectomycorrhizal fungi.

Global change has altered nitrogen availability in boreal forest soils. As ectomycorrhizal fungi play critical ecological functions, shifts in their abundance and community composition must be considered in the response of forests to changes in nitrogen availability. Furthermore, ectomycorrhizas are symbiotic, so the response of ectomycorrhizal fungi to nitrogen cannot be understood in isolation of their plant partners. Most previous studies, however, neglect to measure the response of host trees to nitrogen addition simultaneously with that of fungal communities. In addition to being one-sided, most of these studies have also been conducted in coniferous forests. Deciduous and "dual-mycorrhizal" tree species, namely those that form ecto- and arbuscular mycorrhizas, have received little attention despite being widespread in the boreal forest. We applied nitrogen (30kgha-1 year-1 ) for 13years to stands dominated by aspen (Populus tremuloides Michx.) and hypothesized that tree stem radial growth would increase, ectomycorrhizal fungal biomass would decrease, ectomycorrhizal fungal community composition would shift, and the abundance of arbuscular mycorrhizal (AM) fungi would increase. Nitrogen addition initially increased stem radial growth of aspen, but it was not sustained at the time we characterized their mycorrhizas. After 13years, the abundance of fungi possessing extramatrical hyphae, or "high-biomass" ectomycorrhizas, doubled. No changes occurred in ectomycorrhizal and AM fungal community composition, or in ecto- and AM abundance measured as root colonization. This dual-mycorrhizal tree species did not shift away from ectomycorrhizal fungal dominance with long-term nitrogen input. The unexpected increase in high-biomass ectomycorrhizal fungi with nitrogen addition may be due to increased carbon allocation to their fungal partners by growth-limited trees. Given the focus on conifers in past studies, reconciling results of plant-mycorrhizal fungal relationships in stands of deciduous trees may demand a broader view on the impacts of nitrogen addition on the structure and function of boreal forests.

Diversity and community structure of ectomycorrhizal fungi in Pinus thunbergii coastal forests bordering the Yellow Sea of China.

Ectomycorrhizas play a fundamental role in the function of forest ecosystems, being essential for plant nutrition absorption and soil quality. Many afforestation and reforestation programmes have begun to recover and maintain coastal forests in China, using pine species including Pinus thunbergii. We investigated the ectomycorrhizal colonization status of P. thunbergii in coastal pine forests of the Yellow Sea of China. We identified a total of 53 ectomycorrhizal fungal species in 74 soil samples collected from three sites and found that Thelephoraceae (10 spp.) and Russulaceae (8 spp.) were the most species-rich ectomycorrhizal fungal lineages. Russula sp. 1 was the most abundant species, accounting for 15.3% of the total ectomycorrhizal tips identified. Most of the remaining species were rare. At this small scale, host identity had no significant effect on the ectomycorrhizal fungal community composition (A = 0.036, P = 0.258), but sampling sites did (A = 0.135, P = 0.041). In addition, Na+ and K+ content and soil pH had significant effects on the ectomycorrhizal fungal community. The ectomycorrhizal fungal community associated with different host plants will become an important new direction for research, as ectomycorrhiza may have the potential to improve host capacity to establish in salt-stressed environments. This will provide a theoretical basis and technical support for saline soil reforestation and rehabilitation using pine species with compatible, native ectomycorrhizal fungi in Yellow Sea coastal areas.

Location, but not defensive genotype, determines ectomycorrhizal community composition in Scots pine (Pinus sylvestris L.) seedlings.

For successful colonization of host roots, ectomycorrhizal (EM) fungi must overcome host defense systems, and defensive phenotypes have previously been shown to affect the community composition of EM fungi associated with hosts. Secondary metabolites, such as terpenes, form a core part of these defense systems, but it is not yet understood whether variation in these constitutive defenses can result in variation in the colonization of hosts by specific fungal species.We planted seedlings from twelve maternal families of Scots pine (Pinus sylvestris) of known terpene genotype reciprocally in the field in each of six sites. After 3 months, we characterized the mycorrhizal fungal community of each seedling using a combination of morphological categorization and molecular barcoding, and assessed the terpene chemodiversity for a subset of the seedlings. We examined whether parental genotype or terpene chemodiversity affected the diversity or composition of a seedling's mycorrhizal community.While we found that terpene chemodiversity was highly heritable, we found no evidence that parental defensive genotype or a seedling's terpene chemodiversity affected associations with EM fungi. Instead, we found that the location of seedlings, both within and among sites, was the only determinant of the diversity and makeup of EM communities.These results show that while EM community composition varies within Scotland at both large and small scales, variation in constitutive defensive compounds does not determine the EM communities of closely cohabiting pine seedlings. Patchy distributions of EM fungi at small scales may render any genetic variation in associations with different species unrealizable in field conditions. The case for selection on traits mediating associations with specific fungal species may thus be overstated, at least in seedlings.

Fungal Diversity and Community Assembly of Ectomycorrhizal Fungi Associated With Five Pine Species in Inner Mongolia, China.

Ectomycorrhizal (EM) fungi play vital roles in ensuring host plants’ health, plant diversity, and the functionality of the ecosystem. However, EM fungal diversity, community composition, and underlying assembly processes in Inner Mongolia, China, where forests are typically semiarid and cold-temperate zones, attract less attention. In this study, we investigated EM fungal communities from 63 root samples of five common pine plants in Inner Mongolia across 1,900 km using Illumina Miseq sequencing of the fungal internal transcribed spacer 2 region. We evaluated the impact of host plant phylogeny, soil, climatic, and spatial variables on EM fungal diversity and community turnover. Deterministic vs. stochastic processes for EM fungal community assembly were quantified using β-nearest taxon index scores. In total, we identified 288 EM fungal operational taxonomic units (OTUs) belonging to 31 lineages, of which the most abundant lineages were Tomentella–Thelephora, Wilcoxina, Tricholoma, and Suillus–Rhizopogon. Variations in EM fungal OTU richness and community composition were significantly predicted by host phylogeny, soil (total nitrogen, phosphorus, nitrogen–phosphorus ratio, and magnesium), climate, and spatial distance, with the host plant being the most important factor. β-nearest taxon index demonstrated that both deterministic and stochastic processes jointly determined the community assembly of EM fungi, with the predominance of stochastic processes. At the Saihanwula site selected for preference analysis, all plant species (100%) presented significant preferences for EM fungi, 54% of abundant EM fungal OTUs showed significant preferences for host plants, and 26% of pairs of plant species and abundant fungal OTUs exhibited remarkably strong preferences. Overall, we inferred that the high diversity and distinctive community composition of EM fungi associated with natural pine species in Inner Mongolia and the stochastic processes prevailed in determining the community assembly of EM fungi. Our study shed light on the diversity and community assembly of EM fungi associated with common pine species in semiarid and cold temperate forests in Inner Mongolia, China, for the first time and provided a better understanding of the ecological processes underlying the community assembly of mutualistic fungi.

Tree Species Richness and Neighborhood Effects on Ectomycorrhizal Fungal Richness and Community Structure in Boreal Forest.

Tree species identity is one of the key factors driving ectomycorrhizal (EcM) fungal richness and community composition in boreal and temperate forest ecosystems, but little is known about the influence of tree species combinations and their neighborhood effects on EcM communities. To advance our understanding of host plant effects on EcM fungi, the roots of silver birch, Scots pine, and Norway spruce were analyzed using high-throughput sequencing across mature boreal forest exploratory plots of monocultures and two- and three-species mixtures in Finland. Our analyses revealed that tree species identity was an important determinant of EcM fungal community composition, but tree species richness had no significant influence on EcM fungal richness and community composition. We found that EcM fungal community composition associated with spruce depends on neighboring tree species. Our study suggests that at a regional-scale tree species identity is the primary factor determining community composition of root-associated EcM fungi alongside with tree species composition effects on EcM fungal community of spruce in mixed stands.

Characterizing Ectomycorrhizal Fungal Community Structure and Function of Two Varieties of Pinus clausa That Differ in Disturbance History

Despite the immense amount of diversity present in the soil biota, the ecological and evolutionary processes that regulate species diversity and abundance of ectomycorrhizal (ECM) fungi across space and time remain elusive. In forest ecosystems, ECM fungal diversity may be maintained by periodic disturbances which operate at different time scales due to their effects on host genetic and phenotypic characteristics and the associated environment. To investigate the degree to which these factors shape ECM fungal community composition and function, I sampled 10 independent sites for a pine species indicative of an endangered ecosystem, the Florida scrub, where disturbance history has driven the divergence of a single species into two genetically distinct varieties (Pinus clausa var. immuginata and var. clausa). A total of 300 ECM fungal species were identified based on rDNA ITS sequences, but each variety harbors different ECM species composition and function. A follow-up greenhouse experiment, in which the seed from each variety was grown in its own soil (“home”) and in the soil of the other variety (“away”), suggests these communities differentially impact the growth of their host seedlings. While var. clausa seedlings had the same total biomass regardless of soil origin, var. immuginata had higher biomass in their own soil compared to var. clausa. This is likely due to an increased number of ECM colonized tips in the home soil compared to in away soil. Taken together, these results may suggest different evolutionary histories where structure host genetic and phenotypic characteristics may be important for structuring their dynamics with ECM fungi.