Introduction: Havana notifies 30% of cases of tuberculosis (TB) in Cuba. Objective: to assess the territorial inequalities in the occurrence of TB in the municipalities of Havana, 2015 and 2016-2020 according to some intermediate and individual determinants. Methods: ecological study of time series on TB notifications in 2015 and 2016-2020. The source was the MINSAP surveillance base. We calculated the period rate (TP), the reference was the lowest, we estimated the absolute and relative differences, and the Percentage Population Attributable Risk. We estimate the PT in children under and over 19 years of age. According to the TP, we proposed two scenarios: -5% annual reduction to all municipalities, according to WHO Milestones and -discriminated 5% annual reduction to municipalities with TP < 9 and 7% those ≥ 9/100,000. We calculated two dispersion indices and proportions of TB in HIV and inmates. We categorized the municipalities according to renewed goals towards elimination. Results: the reference municipality was Playa (5.5), the relative difference was 3.3 times more in Habana Vieja. Cotorro and Guanabacoa did not provide pediatric cases. The second scenario had moderate inequality. TB-HIV predominated in Old Havana (13.1%). 11/15 municipalities categorized in satisfactory control. Conclusions: inequalities were generally moderate in the Havana municipalities, however, the rates of childhood TB are very low in the territories, two of them reached the elimination goal. TB/HIV coinfection concentrates the highest proportions in some municipalities.