Niche Of Species Research Articles

Whether niche changes promote the evolution of species: a case study of Paeonia in Asia and North America

Ecological changes have been observed to promote rates of lineage diversification, yet the precise roles of ecological factors, species evolution, and environmental variability in driving species diversity remain research hot spots. The association between ecological change and lineage diversification, particularly with regard to the size of the time scale, remains poorly understood. To explore whether ecological change facilitates species evolution, we focused on the unique family Paeoniaceae, which encompasses both herbaceous and woody taxa, to investigate the evolutionary rates. As a unique family characterized by a single genus of angiosperms and comprising various climatic types, the ecological niche changes of Paeoniaceae are closely associated with the evolution, making it an ideal model for conducting association analysis. In this study, we integrated the molecular fragments and ecological factors to explore the relationship between species evolution and niche changes in Paeoniaceae. The phylogenetic tree revealed that Paeoniaceae forms a sister relationship with Penthoraceae, Haloragidaceae, Iteaceae, Crassulaceae, and Saxifragaceae, constituting an independent clade based on the positive selection of molecular fragments including two protein-coding genes and eight non-coding regions. The divergence time was estimated to be between 102 and 116 Mya (Million years ago). The phylogenetic tree within Paeonia revealed a clear division into three groups: sections of Paeonia, Moutan, and Onaepia with high support values for each branch based on the ten positive selection of molecular fragments. The rapid rate of evolution observed in Paeonia, about 0-5 Mya. In addition, ecological niche modeling showed that the potential distributions for Paeonia expanded from middle Asia to eastern Asia, and from central North America to the Northern part of North America during the Last Glacial Maximum (LGM) to Mid Holocene (MID) period. This suggests that Paeonia continuously adapted to changing ecological environments over time. Compared to the rate of climatic niche divergence and lineage diversification, the ecological niche of Paeonia underwent significant changes during the period of 3-11 Mya, occurring 5 Mya earlier than the period of evolutionary rate change. These findings offer comprehensive insights into the relationship between niche change and the evolution of species, providing valuable perspectives for further ecological cultivation efforts.

Mowing mitigates the negative impacts of long-term warming on community composition and niche characteristics of alpine meadow on the Tibetan Plateau

Climate warming and human disturbance are supposed to have significantly impacted the alpine grasslands. However, it is still unclear how human activity affects the community composition and niche characteristics in response to warming. We conducted a two-factorial experiment in an alpine meadow, and set up four treatments: warming, mowing, warming with mowing, and control. Based on the investigation of community composition and niche characteristics, we evaluated the impacts of soil carbon, nitrogen, and phosphorus on species niche overlap. The results showed that mowing significantly increased species richness of Grass, Sedge, Forbs and the importance value of Sedge compared to warming (P < 0.05). The niche breadth of species (>50%) was reduced by warming, but increased under mowing. The niche overlap mainly occurred between Grass and Forbs in warming, while it was evenly distributed among species after mowing, which alleviated the negative effects of warming on interspecific competitiveness. Warming increased the number of species pairs with a niche overlap value >0.9 by 24.15%, while warming with mowing decreased it by 2.7%. The number of species pairs with niche overlap was significantly correlated with soil total nitrogen and soil available nitrogen (P < 0.05). In particular, the species pairs with highly competitive showed a greater dependency on soil nitrogen. Our work highlights that moderate utilization and soil nitrogen are two crucial factors influencing the response of community structure in alpine meadows to future climate change. The study provides an important reference for predicting and addressing the impact of global climate change on adaptive management and grassland protection.

Personality shapes inter- and intraspecific interactions in rodents: a behavioral experiment with Brandt’s voles (Lasiopodomys brandtii)

Abstract Interspecific and intraspecific interactions are integral components of antagonistic and mutualistic networks of all animal species. These interactions are affected by various factors, such as morphological, physiological, and genetic characteristics. However, the impact of personality traits on animal inter- and intraspecific interactions remains unclear. We investigated the role of different personality types (proactive and reactive) in Lasiopodomys brandtii. We examined both intraspecific interactions with Lasiopodomys brandtii and interspecific interactions with Kunming mice. We found that for intraspecific interactions, proactive individuals had higher numbers of contacts with opponents, spent more time in the vicinity of an opponent, and moved greater distances within the vicinity of an opponent. For interspecific interactions, proactive individuals had higher numbers of contacts with opponents than reactive individuals. These results suggest that proactive individuals, especially male voles, tend to occupy dominant positions in both intraspecific and interspecific relationships. Consequently, our study is meaningful in understanding how personality traits affect animal behavior, species niche differentiation, and community dynamics and local biodiversity.

Extreme-value modelling of migratory bird arrival dates: Insights from citizen science data

Abstract Citizen science mobilises many observers and gathers huge datasets but often without strict sampling protocols, resulting in observation biases due to heterogeneous sampling effort, which can lead to biased predictions. We develop a spatiotemporal Bayesian hierarchical model for bias-corrected estimation of arrival dates of the first migratory bird individuals at their breeding sites. Higher sampling effort could be correlated with earlier observed dates. We implement data fusion of two citizen-science datasets with fundamentally different protocols (BBS, eBird) and obtain posterior distributions of the latent process, which contains four spatial components endowed with Gaussian process priors: species niche; sampling effort; position and scale parameters of annual first arrival date. The data layer consists of four response variables: counts of observed eBird locations (Poisson); presence-absence at observed eBird locations (Binomial); BBS occurrence counts (Poisson); first arrival dates (Generalised Extreme-Value). We devise a Markov Chain Monte Carlo scheme and check by simulation that the latent process components are identifiable. We apply our model to several migratory bird species in the northeastern United States for 2001−2021 and find that the sampling effort significantly modulates the observed first arrival dates. We exploit this relationship to effectively bias-correct predictions of the true first arrivals.

Warming Increases Ecological Niche of Leymus chinensis but Is Detrimental to Species Diversity in Inner Mongolia Temperate Grasslands

Dominant species are crucial in regulating the structure and productivity of plant communities. Adaptation strategies to climate change vary among the dominant species of different life types. However, the responses of the ecological niches of dominant species to warming and precipitation in semi-arid grasslands and their impacts on community structure and function are unknown. This study involved conducting a long-term experimental simulation of warming and increased precipitation on grasslands in Inner Mongolia and studying population dynamics, ecological niches, and their responses to the structure and function of the community species of two dominant plants, L. chinensis (perennial rhizome grass) and S. krylovii (perennial clumped grass). The results show that the niche width of L. chinensis increased and S. krylovii decreased under warming and increased precipitation conditions. The overlap of L. chinensis and S. krylovii decreased under the same conditions. The niche widths of L. chinensis and S. krylovii were 1.22 for the control (C), 1.19 and 1.04 under warming (W) conditions, 1.27 and 0.97 under warming plus precipitation (WP) conditions, and 1.27 and 1.24 under the conditions of precipitation addition (P). The niche overlap of L. chinensis and S. krylovii were 0.72 in C, 0.69 in W, 0.68 in WP, and 0.82 in P. The biomass share and importance value of L. chinensis increased, and those of S. krylovii decreased in response to warming and precipitation. The effects of warming on species diversity and community stability are primarily influenced by the effects on the niche breadth of S. krylovii. Combined with our previous study, L. chinensis will offer more resources in communities in warmer and wetter steppe climates in the future. However, this is not conducive to community diversity.

Does the karst spring improve fish abiotic habitat in mountain streams?

Mountain streams constitute challenging habitat for many fish species due to rapid and variable flow, cool temperature, and limited food resources. Groundwaters recharge by karst spring may however mitigate harsh habit conditions of mountain streams providing niches for different fish species. This study aims to assess the suitability of mountain streams, replenished by karst springs, for various fish species like alpine bullhead, European grayling, brown and brook trout. The study was conducted in the Chochołowski Stream in the Western Tatra Mountains, Poland. The assessment of abiotic habitat is based on different characteristics of hydrological and thermal regimes as well as water chemical composition investigated between 01.09.2012 and 31.09.2014. The findings reveal that: 1) downstream variability of habitat abiotic conditions (such as water temperature, flow, water chemical composition) may affect the distribution of fish species, 2) karst springs contribute up to 100% of the stream’s recharge during periods of winter low flow, 3) karstic groundwater reduces the variability and amplitudes of stream water temperature and weaken the periodicity in water temperature associated with daily course of air temperature and solar radiation, 4) groundwaters prevent stream freezing in winter and moderate summer temperatures, 5) increasing mineralisation of water below the spring recharge may positively affect fish distribution. The findings underscore the importance of karst springs in modifying the abiotic conditions of fish habitat in mountain streams.

Evolutionary origins, macroevolutionary dynamics, and climatic niche space of the succulent plant syndrome in the Caryophyllales.

The succulent plant syndrome is defined by the coordination of traits that enhance internal water storage within plant tissues. Although distributed globally in different habitats, succulent plants are thought to have evolved to avoid drought in arid regions, due to trait modifications that decrease tissue water deficits. We evaluated the evolution and the ecological significance of the succulent strategy at a global scale by comparing the climatic niche of species displaying succulence within the Core Caryophyllales with their non-succulent relatives. We assembled and curated a worldwide dataset of 201K georeferenced records belonging to 5447 species within 28 families, and analyzed the climatic niche of species along with their origin and evolutionary trajectories using ecological niche modeling, phylogenetic regression, divergence dates and ancestral state estimation. Results indicate the Core Caryophyllales have inhabited drylands since their origin in the Early Cretaceous. However, the succulent syndrome appeared and diversified during later geologic periods. The climatic niche space of succulents is narrower than non-succulent relatives, but no climate niche separation was detected between groups. Our results support alternative interpretations on the environmental and ecological forces that spurred the origin and diversification of the succulent plant syndrome and the radiation of rich succulent lineages.

Open-source software integration: A tutorial on species distribution mapping and ecological niche modelling

Over the last decade, access to global data has become increasingly critical for research, allowing insights into diverse biological, environmental and societal questions at a macro scale. Digitisation has greatly enhanced the use of herbarium data in the analysis of species distributions and ecological niche modelling. Yet, sources on modelling and mapping methodology using open-source software is greatly lacking for beginners. We have created a replicable and thorough tutorial to visualise species occurrence data and exploratory analysis that was developed by undergraduates with broad backgrounds and levels of experience. This tutorial integrates the open-source programmes QGIS, MaxEnt and R to develop distribution maps, using bryophytes as a case study, to promote the accessibility of open-source software and remote access learning. This tutorial has already set the foundation for further research into distribution modelling of rare Illinois bryophytes to better understand the potential impact of climate change.

Diversity and Composition of Posidonia oceanica-Associated Bacterial and Fungal Communities: Effect of Boat-Induced Mechanical Stress in the Villefranche-sur-Mer Bay (France)

The anchoring and mooring of boats mechanically damage Posidonia oceanica plants; however, no information is available on the effect of this kind of damage on the plant holobiont, i.e., on the associated bacterial and fungal communities. Indeed, bacterial communities are known to change under different plant stress conditions but the dynamics of seagrass-associated fungi remain largely unexplored. We used DNA metabarcoding to profile the bacterial and fungal colonizers of two nearby P. oceanica patches in the Villefranche-sur-Mer bay (France) differing by the amount of exposure to mechanical stress due to boat transit and anchoring. Bacterial communities showed a significant reduction in diversity with an increase in Vibrio sp. in the rhizome and root samples from the impacted site, where the accumulation of dead organic material favors opportunistic heterotrophs. Conversely, fungal communities showed increased diversity in the leaf samples from the impacted site, where a reduction in the dominant P. oceanica host-specific mutualistic endosymbiont, Posidoniomyces atricolor, was found. This change was probably due to the opening up of new colonizable niches for several fungal species. Although this study represents a preliminary assessment of the effect of mechanical stresses on P. oceanica-associated microbial communities, it further supports their putative use as a seagrass descriptor.

Comparison of three global canopy height maps and their applicability to biodiversity modeling: Accuracy issues revealed

AbstractGlobal mapping of forest height is an extremely important task for estimating habitat quality and modeling biodiversity. Recently, three global canopy height maps have been released, the global forest canopy height map (GFCH), the high‐resolution canopy height model of the Earth (HRCH), and the global map of tree canopy height (GMTCH). Here, we assessed their accuracy and usability for biodiversity modeling. We examined their accuracy by comparing them with the reference canopy height models derived from airborne laser scanning (ALS). Our results show considerable differences between the evaluated maps. The root mean square error ranged between 10 and 18 m for GFCH, 9–11 m for HRCH, and 10–17 m for GMTCH, respectively. GFCH and GMTCH consistently underestimated the height of all canopies regardless of their height, while HRCH tended to overestimate the height of low canopies and underestimate tall canopies. Biodiversity models using predicted global canopy height maps as input data are sufficient for estimating simple relationships between species occurrence and canopy height, but their use leads to a considerable decrease in the discrimination ability of the models and to mischaracterization of species niches where derived indices (e.g., canopy height heterogeneity) are concerned. We showed that canopy height heterogeneity is considerably underestimated in the evaluated global canopy height maps. We urge that for temperate areas rich in ALS data, activities should concentrate on harmonizing ALS canopy height maps rather than relying on modeled global products.

Tree Germination Sensitivity to Increasing Temperatures: A Global Meta‐Analysis Across Biomes, Species and Populations

ABSTRACTAimClimate change is altering forest communities at an unprecedented pace. Current knowledge on trees' responses to climate shifts is based mostly on adults. Yet, germination traits and intraspecific variation can notably modulate species niches. This paper provides a quantitative review about warming effects on tree species' germination, the role of population effects and its implications under future climate.LocationGlobal; covering boreal, temperate, Mediterranean and tropical–subtropical biomes.Time Period1996–2024.Major Taxa StudiedTree species.MethodsWe reviewed 50 papers addressing 63 species and 250 populations. Then, we conducted a meta‐analysis to assess warming effects on germination percentage and time, and how germination is modulated by climate at seed origin. We further evaluated populations' adaptation to local temperature on 27 species. Finally, we estimated population‐based germination niches in eight of these species under current climate conditions and a 2080 climate scenario (SSP5‐8.5).ResultsWarming induced more consistent shifts in germination time than in percentage across biomes, hastening germination. Temperature at seed origin shaped responses to warming in boreal and temperate species. In Mediterranean and tropical–subtropical species, different responses were associated with variation in precipitation‐related variables. Local adaptation was more frequent in species from the tropics, while adaptation lags towards warmer‐than‐today conditions observed in the other biomes. Simulation of germination niches yielded slight although extensive germination reductions in tropical–subtropical species under future climate, whereas the temperate and boreal ones showed overall increases.Main ConclusionsPopulation‐level adjustments are key moderators of germination percentage and phenology response to warming. Their roles vary depending on the prevailing climate in each biome. Temperature at seed origin is an important factor modulating temperate and boreal species' responses, while precipitation‐related variables are more relevant in Mediterranean and tropical–subtropical ones. Local adaptation in the tropical species increases their vulnerability to warming.

Distinctive patterns of bacterial community succession in the riverine micro-plastisphere in view of biofilm development and ecological niches

Exploring plastic bacterial community succession is a crucial step in analyzing and predicting the ecological assembly processes of the plastisphere and its associated environmental impacts. However, microbial biofilm development and niche differentiation during plastic bacterial community succession have rarely scarcely considered. Here, we assessed the differences between three microplastics (MPs) and two natural polymers in terms of biofilm development and niche properties during bacterial community succession, and identified a genus of MPs-degrading bacteria with strong competitive potential in the plastisphere. MPs biofilm development exhibits secondary succession characteristics, whereas natural polymer biofilms persist during the primary succession stage. During succession in plastic bacterial communities, the relationship between nutrient resources and microbial competition was reflected in a positive correlation between species competition and niche breadth, which contradicted the common belief that increased nutrient availability leads to reduced competition. Furthermore, the co-occurrence network revealed that specialists were species with greater competitive potential within the plastisphere. Additionally, the MPs-degrading Exiguobacterium genus represented a key taxon in the plastisphere. Our study provides a reliable pathway for revealing the specificity of plastic bacterial community succession from multiple perspectives and enhances the understanding of ecological assembly processes in the plastisphere.

Deterministic responses of biodiversity to climate change through exotic species invasions.

Biodiversity is increasingly threatened by local extinction under global climate change. This may reflect direct effects of climate on poorly adapted native species or increased impacts of exotic species in these conditions, but their relative importance is poorly understood. By examining global occurrence records of 142 plant species found in the Yangtze River Valley, we found that the climatic niches of exotic species differed from those of natives, mainly reflecting exotics being most common in warmer, drier and more isothermal climates in their native ranges. These differences in climatic niches, especially temperature, predicted invasion intensity in 459 plots along a 1,800-km transect in the Yangtze River Valley. On the basis of this strong match between model predictions and field survey results, we predict that invasions will probably be more intense in future climatic conditions, especially from warming at the coldest sites. The direct negative effect of warming on native diversity was larger than the indirect effects mediated through increased invasions. However, moderate invasion increased communities' overall species diversity. More broadly, our study highlights the role of exotic species in the ecological response of regional biodiversity to global climate change.

Co‐occurrence in snake and lizard sister species is unrelated to major ecomorphological traits

AbstractEnvironmental factors and interspecific interactions, such as competition and facilitation, can shape species' geographic ranges. Here, we tested the relationship between geographic range overlap of squamate sister species, and their divergence in body size, diel activity, and microhabitat use. Competition theory predicts that sister species with similar traits will overlap less geographically than sister pairs with dissimilar traits. However, similar distributions may present similar selective pressures and favour similar adaptations, such that habitat filtering may result in species with more similar traits in sympatry. Across 1434 sister species contrasts, we found little relationship between range overlap and niche divergence. In some models, the divergence in body size and microhabitat use marginally increased with sympatry, while in other models, sympatric sisters had similar activity times. However, the low R‐squared values of almost all these models lend only weak support to predictions from competition or habitat filtering theories. Sympatric sister species within the same biome showed more similar activity times than expected, lending some support to habitat filtering. Niche divergence in allopatry or sympatry, as calculated using a multi‐trait dissimilarity index, did not show a phylogenetic signal, and niches of sister species from different squamate clades did not deviate significantly from the null expectation. Overall, niche divergence or convergence, across the axes we explored, is not a prerequisite for regional species co‐occurrence. We suggest here that the lack of consistent support for either limiting similarity or habitat filtering may reflect that both these forces act as transient phenomena. More fine‐grained analyses, in space and time, would be needed to detect their fingerprints. Thus, coexistence in the face of competition can arise due to various evolutionary and biogeographic mechanisms, acting concurrently or asynchronously.

The impact of multi-type artificial reef habitats on the feeding ecology and trophic niche of dominant rocky reef fish species (Hexagrammos otakii and Sebastes schlegelii)

Large-scale artificial reef constructions have been carried out in the coast of northern Yellow Sea, which has effectively enhanced populations of rocky reef fish species. However, there is a lack of evidence regarding the differences in community composition among different types of artificial reef habitats. This study scrutinizes the foraging dynamics and ecological niche partitioning of Hexagrammos otakii and Sebastes schlegelii, which are two representative rocky reef fish species in the northern Yellow Sea. Stomach content analysis indicates that H. otakii exhibits a more diverse diet compared to S. schlegelii, with both species achieving the highest dietary diversity within concrete reef habitats. When factoring in body size, the dietary diversity for fish in the 0–15 cm size class was found to be the greatest within rock reef habitat, while larger individuals exhibited higher diversity within ship artificial reef habitats. The prey composition results demonstrate spatial differentiation patterns consistent across all size classes, with these discrepancies predominantly situated between ship and concrete or rock artificial reef habitats. The taxa driving these differences varied with fish species and body size, encompassing various prey categories such as Decapoda, Teleost, Polychaeta and Amphipod. Findings from the Stable Isotope Mixing Model (SIMMR) revealed significant dietary variations linked to species, habitat type and size class, which were fundamentally in agreement with the stomach content analysis. Niche analysis disclosed that overall niche breadth for both fish populations was largest in concrete artificial reef habitat. This suggests that each reef type caters to specific fish size classes, showcasing distinct spatial and interspecific variations in foraging tactics.

Arsenic, selenium, and mercury speciation in hypersaline lakes of the Andean Altiplano: Link between extreme levels and biodiversity repartition

Arsenic (As) and mercury (Hg) are highly toxic contaminants whereas selenium (Se) is both an essential trace element and potentially harmful at higher concentrations. The hyper-saline lakes of southern Bolivian Altiplano, which are ecological niches for endemic species, are also expected to be enriched in these toxic trace elements. The biogeochemistry of As, Hg, and Se in such high-altitude extreme environments (e.g., high UV radiation and salt content) remains poorly understood. In this study, we investigated the concentrations and chemical forms (speciation) of As, Hg, and Se in sediment, water, and air samples of Lagunas Colorada (LC), Verde (LV), and Blanca (LB) in the South Lipez region (>4200 m a.s.l.). We compared them with the repartition of biodiversity (invertebrates, algae, and bacteria). Extreme As concentrations were found in water (up to 82 mg L−1), and the main As species was inorganic As(V), with neither biogenic methylated As nor volatile As forms being detected in water and air, respectively. Se concentrations in water were of 0.1 to 1.4 μg L−1, and Se existed under different redox states, i.e., Se(IV), Se(VI), and reduced Se (0, -II), including biogenic methylated Se(-II) (trimethyl selenonium). Volatile Se compounds (e.g., dimethyl selenide) were detected in water and air samples. Hg was enriched in the surface water (6 to 30 ng L−1) compared to other regional water bodies, and a significant amount of methyl-Hg and gaseous Hg(0) was detected. The drastic disparity between As, Se and Hg concentrations and speciation between lakes has important implications for their cycling in these extreme aquatic systems. While As mostly accumulated in its oxidized and non-volatile form, Hg and Se concentrations can be controlled by significant conversion to reduced and methylated forms, allowing efficient evasion to the atmosphere. Finally, the salinity, including major ions, and high levels of As were among the main drivers of biodiversity repartition between lakes.

Host and parasite intervality in differentially human‐modified habitats

Host–parasite interactions are influenced by present and past eco‐evolutionary interactions and the local environment. An ecological community defines the potential host range of each parasite and the potential parasite diversity of each host species. Past and present processes translate potential to realised interaction niches of parasite and host species. Host–parasite interactions are antagonistic, which may slow the saturation of their interaction niches. Intervality, a property of bipartite networks, measures saturation of interaction niches. Intervality of a community increases as the interaction niches of species of one guild (e.g. hosts) become saturated for their interactions with another guild (e.g. parasites). Characteristics driving intervality in host and parasite communities are largely unknown, as well as the effect of environmental change on intervality of these communities. In our study, we assess if the characteristics ‘phylogenetic relatedness' and ‘overlap in ecological interactions' explain intervality of rodent host–helminth parasite communities. In addition, we contrast intervality of these communities from habitats that differ in their history of human‐driven modification. We performed the analyses for the interaction niches of both parasites and hosts, independently. Our results indicated that host and parasite communities were non‐interval or significantly less interval than expected by chance. Phylogenetic relatedness and overlap in ecological interactions did not explain the maximum values of intervality. We speculate that antagonistic coevolution in host–parasite communities may hinder communities to reach saturation, which would explain why it is difficult to find the characteristics that explain intervality of a community. Interestingly, intervality of the interaction niche of parasites (host range) increased with habitat modification (i.e. saturation increased), whereas intervality of the interaction niche of hosts (parasite diversity) decreased as habitat modification increased. These opposite trends suggest that interaction niches of parasites and hosts respond differently to habitat modification.

Is it all about size? Dismantling the integrated phenotype to understand species coexistence and niche segregation

Abstract Niche segregation is a mechanism by which competition between coexisting species is reduced. The ecological niche is a multidimensional space shaped by the conditions and resources that enable the existence of species. We conducted comprehensive univariate and multidimensional analyses of phenotypic traits encompassing morphology, functional performance and ecophysiology, to investigate which phenotypic traits contribute to niche segregation and overlap in two coexisting green lizard species. Our analyses revealed that the main driver of niche segregation was body size. However, when considering size‐corrected phenotypic spaces, ecophysiological traits were still distinct, with little overlap between co‐occurring species. Such differentiation was linked mainly to preferred temperature variance and water loss, highlighting the importance of thermal and hydric niche segregation. Some particular traits such as limb length also contributed to niche segregation being maintained in the morphological space, even when the effect of size was accounted for. Instead, the phenotypic space of functional performance traits (i.e. bite force, locomotor performance) showed the greatest overlap between the two species, thus, less niche segregation was observed, once size effects were removed. Therefore, functional performance traits contribute in a minor proportion to the effective niche segregation between the two species. In light of our results, the most adequate perspective to understand niche segregation in coexisting species is through a multidimensional approach in differentiated phenotypic spaces. Our dismantling of phenotypic traits allowed us to identify niche areas in which trait overlap occurs and others that promote niche segregation, considering or not size effects. Our results suggest that differential use of structural and functional niche space promotes effective niche segregation, potentially reducing direct competition between species. We highlight the importance of studies that include the combination of several phenotypic traits that, as a whole, provide insights to better understand the mechanisms by which coexisting organisms exploit differentiated resources in multidimensional spaces. Read the free Plain Language Summary for this article on the Journal blog.

Paleo-species distribution modelling in the marine realm: protocol for a global scoping review

Background Studying the spatial distribution of marine species and its alterations through time is fundamental for understanding how they respond to environmental changes, as well as the changes of marine biodiversity, its geographic patterns, and how to best preserve it. Species distribution models (SDM) and Ecological Niche Models (ENM) are statistical tools widely used to investigate distribution range shifts under future and past climate change. The present work provides a protocol for conducting a scoping review (ScR) to assess the contribution of SDM and ENM to the study of past environmental suitability, its spatial and temporal extent and gaps, as well as to identify methodological challenges. Protocol The ScR follows the Joanna Briggs Institute (JBI) methodology. Two online databases, Web of Science and Scopus, will be used for the bibliographic search. Inclusion criteria will be as follows: studies applying SDM and/or ENM in the marine realms worldwide, with clear methodological details, to identify to what extent they contributed to paleobiology. Both peer-reviewed articles, book chapters and grey literature will be considered for eligibility. No search limitations will be applied regarding publication year, geographic area and source type. Studies in English, Spanish and French will be reviewed. The Covidence software will be used for document selection and data extraction. Conclusions This comprehensive approach will provide a visual representation of the available studies, enhancing the understanding and interpretation of the results focusing on the contribution of SDM and ENM to species potential ancient distribution knowledge, identifying the spatial and temporal extent and the presence of gaps of knowledge in their use.

Mini-Review: The Distinct Carbohydrate Active Enzyme Secretome of Rhizopus spp. Represents Fitness for Mycelium Remodeling and Solid-State Plant Food Fermentation.

Rhizopus is a genus of filamentous fungi belonging to the Mucoromycota division. Rhizopus species produce a white, dense mycelium, which is used to create tempeh, a solid-state fermented Asian soybean product, that is gaining renewed attention as a proteinaceous plant food. The profile of carbohydrate-active enzymes (CAZymes) of a fungus or group of fungi, particularly the secretome CAZymes profile, reflects adaptation to different lifestyles and habitats, and has a significant impact on fermentative capacity. This review examines the CAZymes profiles of Rhizopus species focusing on their implication for carbohydrate utilization and solid-state fermentation of plant materials. Through comprehensive genomic assessments and comparisons with other filamentous fungi, we particularly highlight how the unique CAZymes secretome profile is closely correlated with the taxonomy and ecological niches of Rhizopus species. We discuss how the CAZymes secretome capacity of Rhizopus species differs from other fungi and summarize the current state of knowledge regarding the specific CAZymes involved in the modification of carbohydrates in the fungal cell wall and in plant cell walls. We foresee that advanced genomic and proteomic technologies will be used to expand the biotechnology applications of Rhizopus spp.