Early Branching Research Articles

Study of Microsurgical Anatomy of Middle Cerebral Artery in Human Cadaveric Brain

ABSTRACT Background: Micro-dissection of cadaver specimens is the base, on which our knowledge of the intricate anatomy of the human brain. Microsurgical anatomy of middle cerebral artery (MCA) is of particulate interest to neurosurgeons as it is the largest and most complex arterial system of the brain. Although various studies have been done on MCA, no such study has been done taking into consideration large sample size of the Indian population. This study will be advantageous in improving knowledge of MCA and its variations. This will prove useful for neurosurgeons in performing microsurgeries. Objective: A study of the microsurgical anatomy of the MCA in human cadaveric brain; comparison of the findings with the existing studies and implication of these finding in micro-neurosurgical procedures. Materials and Methods: Sixteen formalin-fixed cadaveric brains, that is, 32 vessels from its origin from the internal cerebral artery to M1 segment with respect to diameter, length and branching pattern were studied under high magnification (operating microscope) and the data compared with literature. Results: The mean length of M1 was 24.1 ± 11 mm with the outer diameter of 3.1 ± 08 mm. An average number of perforators pre-bifurcation was 7 and post-bifurcation was 3. The pattern of branching of the main trunk was bifurcation (70%), trifurcation (20%) and tetrafurcation (10%), and amongst this, inferior trunk dominance was seen in 70%. An average number of early cortical branch was 3. Conclusion: The knowledge of anatomy of MCA and its variations is important for neurosurgical residents’ training and neurosurgeons dealing with MCA aneurysm management or bypass surgeries.

The compact genome of the sponge Oopsacas minuta (Hexactinellida) is lacking key metazoan core genes

BackgroundExplaining the emergence of the hallmarks of bilaterians is a central focus of evolutionary developmental biology—evodevo—and evolutionary genomics. For this purpose, we must both expand and also refine our knowledge of non-bilaterian genomes, especially by studying early branching animals, in particular those in the metazoan phylum Porifera.ResultsWe present a comprehensive analysis of the first whole genome of a glass sponge, Oopsacas minuta, a member of the Hexactinellida. Studying this class of sponge is evolutionary relevant because it differs from the three other Porifera classes in terms of development, tissue organization, ecology, and physiology. Although O. minuta does not exhibit drastic body simplifications, its genome is among the smallest of animal genomes sequenced so far, and surprisingly lacks several metazoan core genes (including Wnt and several key transcription factors). Our study also provides the complete genome of a symbiotic Archaea dominating the associated microbial community: a new Thaumarchaeota species.ConclusionsThe genome of the glass sponge O. minuta differs from all other available sponge genomes by its compactness and smaller number of encoded proteins. The unexpected loss of numerous genes previously considered ancestral and pivotal for metazoan morphogenetic processes most likely reflects the peculiar syncytial tissue organization in this group. Our work further documents the importance of convergence during animal evolution, with multiple convergent evolution of septate-like junctions, electrical-signaling and multiciliated cells in metazoans.

Phylogeny and diversification of planthoppers (Hemiptera: Fulgoromorpha) based on a comprehensive molecular dataset and large taxon sampling

Our understanding of the evolution of Fulgoromorpha (Insects, Hemiptera) has relied on molecular studies that have only considered either a limited number of taxa where all the families were not represented simultaneously, or a reduced number of genes.The absence of a global analysis comparing all the available data has thus led to significant biases in the analyzes, as evidenced by the incongruence of the results reported for planthopper phylogeny. Here we provide a phylogenetic and dating analysis of the Fulgoromorpha with a large sampling of 531 ingroup taxa, representing about 80% of the currently described suprageneric taxonomic diversity in this group. This study is based on most of the molecular sequences available to date and duly verified, for a set of nuclear and mitochondrial genes from a taxonomic sampling as complete as possible. The most significant results of our study are: (1) the unexpected paraphyly of Delphacidae whose Protodelphacida seem more related to Cixiidae than to other Delphacidae;(2) the group Meenoplidae-Kinnaridae recovered sister to the remaining Fulgoroidea families; (3) the early branching node of Tettigometridae sister of all the other families;(4) the Achilidae-Derbidae clade with Achilidae Plectoderini including Achilixiidae recovered as monophyletic as well as theFulgoridae-Dictyopharidae clade; and (5) the Tropiduchidae placed sister to the other so called ‘higher’ families (sec. Shcherbakov, 2006).Our divergence times analysis, calibrated with a set of duly verified fossils, suggests that the first diversification of planthoppers occurred in the Early Triassic around 240 Mya and those of the superfamilies Delphacoidea and Fulgoroidea in the Middle-Late Triassic around 210 Mya and 230 Mya, respectively. By the end of the Jurassic, all major planthopper lineages were originated, and all families, around 125 Mya, might havebeen driven in their distribution and evolution (in their first subfamilial divisions) by the geographical constraints of the Gondwanan break-up.Rapid evolutionary radiations occurred particularly in Fulgoridae around 125–130 Mya. Our results stress the importance of the good quality of the sequences used in the molecular analyzes and the primordial importance of a large sampling when analyzing the phylogeny of the group.

Synthesis, Structural Characterization, and CO2 Reactivity of a Constitutionally Analogous Series of Tricopper Mono-, Di-, and Trihydrides.

The formation of hydrides at heterogeneous copper surfaces results in dramatic structural and reactivity changes, yet the morphologies of these materials and their respective roles in catalysis are not well understood. Of particular interest is the reactivity of heterogeneous copper hydrides with carbon dioxide (CO2), an early mechanistic branching point in the CO2 reduction reaction. Herein, we report the synthesis, characterization, and reactivity of tricopper compounds supported by a facially biased, chelating tris(carbene) ligand scaffold. This sterically bulky environment affords access to an isolable series of tricopper hydrides: [LCu3H]2+ (4), [LCu3H2]+ (3), and LCu3H3 (6). Single-crystal X-ray diffraction and solution NMR spectroscopy studies reveal both geometric flexibility within the Cu3 core and fluxionality of hydride ligands across the Cu3 cluster, providing both atomically precise experimental analogues of static surface species and emulating dynamic ligand behavior proposed for surfaces. Electronic structure calculations serve as a predictor of hydricity, which was likewise benchmarked experimentally via both protonolysis and hydride abstraction reactions. Increased hydride number (and commensurately lower cluster charge) results in more hydridic complexes, with a thermodynamic hydricity range spanning >30 kcal/mol. These thermochemical studies serve as an accurate predictor of CO2 reactivity. Together, this Cu3Hx series exhibits the structure/reactivity relationships proposed for catalytically active copper surfaces, validating the application of carefully designed molecular clusters toward elucidating mechanisms in surface science.

Abstract A040: Multi-site sequencing of lethal prostate cancer reveals metastatic dissemination by independent and early-branching clones

Abstract Primary prostate cancer (PCa) is frequently multifocal (genetically independent(GI) clones) and is further characterized by extensive intratumoral heterogeneity (genetically related clones). In metastatic castrate resistant PCa (mCRPC) monoclonal and polyclonal seeding of metastatic sites by related clones has been reported. However, the limited sequencing depth and/or sampling of sites is insufficient to rule out alternative evolutionary routes to drug resistance and metastatic dissemination. Here, we performed deep multi-site sequencing of 22 mCRPC patients to investigate the clonal architecture of mCRPC. Methods We obtained and profiled 81 metastatic biopsies from 22 patients using RNA and whole-exome sequencing (average depth of 600x). For each tumor we reconstructed its clonal phylogeny based on an integrated analysis of mutations (SNV) and copy-number variation (CNV) based on an explicit evolutionary model. Cancer Cell Fractions (CCF) were computed by adjusting variant allele frequencies (VAFs) for tumor purity and CNV multiplicity, followed by joint identification of clones through clustering of variants with similar CCFs and phylogenetic reconstruction using PhylogicNDT, which implements a nonparametric Drichlet process model. To assess overall genetic similarity between metastatic sites (and clones) we quantified the proportions of shared somatic mutations (present in all sites) and private mutations (mutations observed in only one site). Results We noted a high degree of genetic heterogeneity across metastatic sites, with a median of 35% (IQR:[21% - 51%]) shared somatic mutations, and 41% (IQR:[31% - 62%]) site-private mutations. No anatomical site was enriched for private mutations (anova p-value=0.747). Next, we characterized the clonal architecture across metastatic sites. We found a median of 10 clones per patient (IQR:[7.25-14.25]) and a median of 5.5 clones(IQR:[4-8]) per site with an average of 77 new synonymous and non-synonymous mutations per site. The number of subclones did not differ between metastatic sites as grouped by anatomical locations (anova P-value = 0.432). Strikingly, for 5 patients (23%) we found evidence for GI clones or extremely early branching clones metastasizing to different sites. In 2 of the 5 cases genetically unrelated clones metastasized to different sites, shared no common mutations and had distinct CNV profiles. For the remaining 3 cases metastatic sites only a median of 3% of mutations were shared across all sites, but displayed similar CNV profiles, indicating that chromosomal instability drove mutagenesis and preceded the acquisition of driver mutations. Conclusion In line with prior results our data confirms the high heterogeneity of mCRPC. We find metastatic sites to be multi-clonal with evidence of cross-site seeding. The limited number of truncal mutations, patterns of early-branching, suggest the need for multiple biopsies to fully characterize a patient's mCRPC. Our results also demonstrate, for the first time, that mCRPC can metastasize from more than one GI clone in the primary tissue. Citation Format: Noshad Hosseini, Zachery Reichert, Rohit Mehra, Arul Chinnaiyan, Marcin Cieslik. Multi-site sequencing of lethal prostate cancer reveals metastatic dissemination by independent and early-branching clones [abstract]. In: Proceedings of the AACR Special Conference: Advances in Prostate Cancer Research; 2023 Mar 15-18; Denver, Colorado. Philadelphia (PA): AACR; Cancer Res 2023;83(11 Suppl):Abstract nr A040.

Osteohistology reveals the smallest adult Jurassic sauropodomorph.

The earliest sauropodomorphs were small omnivores (less than 10 kg) that first appeared in the Carnian. By the Hettangian, early branching sauropodomorphs (EBSMs) were globally distributed, had variable postures, and some attained large body masses (greater than 10 tonnes). Small-bodied EBSMs like Massospondylus carinatus (less than 550 kg) persist at least until the Pliensbachian at nearly all dinosaur-bearing localities worldwide but are comparatively low in alpha diversity. One potential reason for this is competition with other similarly sized contemporary amniotes, including Triassic gomphodont cynodonts, Jurassic early branching ornithischians, herbivorous theropods and potentially early crocodylomorphs. Today's herbivorous mammals show a range of body size classes (less than 10 g to 7 tonnes), with multiple species of small herbivorous mammals (less than 100 kg) frequently co-occurring. Comparatively, our understanding of the phylogenetic distribution of body mass in Early Jurassic strata, and its explanatory power for the lower thresholds of body mass in EBSMs, needs more data. We osteohistologically sectioned a small humerus, BP/1/4732, from the upper Elliot Formation of South Africa. Its comparative morphology and osteohistology show that it represents a skeletally mature individual of a new sauropodomorph taxon with a body mass of approx. 75.35 kg. This makes it one of the smallest known sauropodomorph taxa, and the smallest ever reported from a Jurassic stratum.

Deciphering Divergent Trypanosomatid Nuclear Complexes by Analyzing Interactomic Datasets with AlphaFold2 and Genetic Approaches.

Acetylation signaling pathways in trypanosomatids, a group of early branching organisms, are poorly understood due to highly divergent protein sequences. To overcome this challenge, we used interactomic datasets and AlphaFold2 (AF2)-multimer to predict direct interactions and validated them using yeast two and three-hybrid assays. We focused on MORF4 related gene (MRG) domain-containing proteins and their interactions, typically found in histone acetyltransferase/deacetylase complexes. The results identified a structurally conserved complex, TcTINTIN, which is orthologous to human and yeast trimer independent of NuA4 for transcription interaction (TINTIN) complexes; and another trimeric complex involving an MRG domain, only seen in trypanosomatids. The identification of a key component of TcTINTIN, TcMRGBP, would not have been possible through traditional homology-based methods. We also conducted molecular dynamics simulations, revealing a conformational change that potentially affects its affinity for TcBDF6. The study also revealed a novel way in which an MRG domain participates in simultaneous interactions with two MRG binding proteins binding two different surfaces, a phenomenon not previously reported. Overall, this study demonstrates the potential of using AF2-processed interactomic datasets to identify protein complexes in deeply branched eukaryotes, which can be challenging to study based on sequence similarity. The findings provide new insights into the acetylation signaling pathways in trypanosomatids, specifically highlighting the importance of MRG domain-containing proteins in forming complexes, which may have important implications for understanding the biology of these organisms and developing new therapeutics. On the other hand, our validation of AF2 models for the determination of multiprotein complexes illuminates the power of using such artificial intelligence-derived tools in the future development of biology.

Chitin utilization by marine picocyanobacteria and the evolution of a planktonic lifestyle

Marine picocyanobacteria Prochlorococcus and Synechococcus, the most abundant photosynthetic cells in the oceans, are generally thought to have a primarily single-celled and free-living lifestyle. However, while studying the ability of picocyanobacteria to supplement photosynthetic carbon fixation with the use of exogenous organic carbon, we found the widespread occurrence of genes for breaking down chitin, an abundant source of organic carbon that exists primarily as particles. We show that cells that encode a chitin degradation pathway display chitin degradation activity, attach to chitin particles, and show enhanced growth under low light conditions when exposed to chitosan, a partially deacetylated soluble form of chitin. Marine chitin is largely derived from arthropods, which underwent major diversifications 520 to 535 Mya, close to when marine picocyanobacteria are inferred to have appeared in the ocean. Phylogenetic analyses confirm that the chitin utilization trait was acquired at the root of marine picocyanobacteria. Together this leads us to postulate that attachment to chitin particles allowed benthic cyanobacteria to emulate their mat-based lifestyle in the water column, initiating their expansion into the open ocean, seeding the rise of modern marine ecosystems. Subsequently, transitioning to a constitutive planktonic life without chitin associations led to cellular and genomic streamlining along a major early branch within Prochlorococcus. Our work highlights how the emergence of associations between organisms from different trophic levels, and their coevolution, creates opportunities for colonizing new environments. In this view, the rise of ecological complexity and the expansion of the biosphere are deeply intertwined processes.

Whole genome sequencing of Ethiopian Brucella abortus isolates expands the known diversity of an early branching sub-Saharan African lineage.

Brucellosis remains one of the most significant zoonotic diseases globally, responsible for both considerable human morbidity and economic losses due to its impacts on livestock productivity. Despite this, there remain significant evidence gaps in many low- and middle-income countries, including those of sub-Saharan Africa. Here we report the first molecular characterisation of Brucella sp. from Ethiopia. Fifteen Brucella sp. isolates from an outbreak in cattle from a herd in central Ethiopia were identified as Brucella abortus, using bacterial culture and molecular methods. Sequencing of the Ethiopian B. abortus isolates allowed their phylogenetic comparison with 411 B. abortus strains of diverse geographical origins, using whole genome single nucleotide polymorphisms (wgSNP). The Ethiopian isolates belonged to an early-branching lineage (Lineage A) previously only represented by data from two strains, both of sub-Saharan African origin (Kenya and Mozambique). A second B. abortus lineage (Lineage B), also comprised solely of strains originating from sub-Saharan Africa, was identified. The majority of strains belonged to one of two lineages of strains originating from a much broader geographical range. Further analyses based on multi-locus sequence typing (MLST) and multi-locus variable-number tandem repeat analysis (MLVA) expanded the number of B. abortus strains available for comparison with the Ethiopian isolates and were consistent with the findings from wgSNP analysis. MLST profiles of the Ethiopian isolates expanded the sequence type (ST) diversity of the early branching lineage of B. abortus, equivalent to wgSNP Lineage A. A more diverse cluster of STs, equivalent to wgSNP Lineage B, was comprised solely of strains originating from sub-Saharan Africa. Similarly, analysis of B. abortus MLVA profiles (n = 1891) confirmed that the Ethiopian isolates formed a unique cluster, similar to only two existing strains, and distinct from the majority of other strains of sub-Saharan African origin. These findings expand the known diversity of an under-represented lineage of B. abortus and suggest a potential evolutionary origin for the species in East Africa. In addition to providing information concerning Brucella species extant within Ethiopia this work serves as the basis for further studies on the global population structure and evolutionary history of a major zoonotic pathogen.

A Young White Dwarf Orbiting PSR J1835−3259B in the Bulge Globular Cluster NGC 6652

We report on the discovery of the companion star to the millisecond pulsar PSR J1835−3259B in the Galactic globular cluster NGC 6652. Taking advantage of deep photometric archival observations acquired through the Hubble Space Telescope in near-UV and optical bands, we identified a bright and blue object at a position compatible with that of the radio pulsar. The companion is located along the helium-core white dwarf cooling sequence, and the comparison with binary evolution models provides a mass of 0.17 ± 0.02 M ⊙, a surface temperature of 11,500 ± 1900 K, and a very young cooling age of only 200 ± 100 Myr. The mass and the age of the companion are compatible with a progenitor star of about 0.87 M ⊙, which started transferring mass to the primary during its evolution along the subgiant branch and stopped during the early red giant branch phase. Combining together the pulsar mass function and the companion mass, we found that this system is observed at an almost edge-on orbit and hosts a neutron star with a mass of 1.44 ± 0.06 M ⊙, thus suggesting a highly nonconservative mass accretion phase. The young age of the WD companion is consistent with the scenario of a powerful, relatively young MSP indicated by the earlier detection of gamma-rays from this system.

Pluripotent, germ cell competent adult stem cells underlie cnidarian regenerative ability and clonal growth

In most animals, pluripotency is irreversibly lost post gastrulation. By this stage, all embryonic cells have already committed either to one of the somatic lineages (ectoderm, endoderm, or mesoderm) or to the germline. The lack of pluripotent cells in adult life may be linked to organismal aging. Cnidarians (corals and jellyfish) are an early branch of animals that do not succumb to age, but the developmental potential of their adult stem cells remains unclear. Here, we show that adult stem cells in the cnidarian Hydractinia symbiolongicarpus (known as i-cells) are pluripotent. We transplanted single i-cells from transgenic fluorescent donors to wild-type recipients and followed them invivo in the translucent animals. Single engrafted i-cells self-renewed and contributed to all somatic lineages and gamete production, co-existing with and eventually displacing the allogeneic recipient's cells. Hence, a fully functional, sexually competent individual can derivefrom a single adult i-cell. Pluripotent i-cells enable regenerative, plant-like clonal growth in these animals.

Growth and Leaf Gas Exchange Upregulation by Elevated [CO2] Is Light Dependent in Coffee Plants

Coffee (Coffea arabica L.) plants have been assorted as highly suitable to growth at elevated [CO2] (eCa), although such suitability is hypothesized to decrease under severe shade. We herein examined how the combination of eCa and contrasting irradiance affects growth and photosynthetic performance. Coffee plants were grown in open-top chambers under relatively high light (HL) or low light (LL) (9 or 1 mol photons m-2 day-1, respectively), and aCa or eCa (437 or 705 μmol mol-1, respectively). Most traits were affected by light and CO2, and by their interaction. Relative to aCa, our main findings were (i) a greater stomatal conductance (gs) (only at HL) with decreased diffusive limitations to photosynthesis, (ii) greater gs during HL-to-LL transitions, whereas gs was unresponsive to the LL-to-HL transitions irrespective of [CO2], (iii) greater leaf nitrogen pools (only at HL) and higher photosynthetic nitrogen-use efficiency irrespective of light, (iv) lack of photosynthetic acclimation, and (v) greater biomass partitioning to roots and earlier branching. In summary, eCa improved plant growth and photosynthetic performance. Our novel and timely findings suggest that coffee plants are highly suited for a changing climate characterized by a progressive elevation of [CO2], especially if the light is nonlimiting.

Dinosaur fauna from the Lower Cretaceous of Phu Kao-Phu Phan Kham, northeastern Thailand: a review and update

Phu Kao-Phu Phan Kham Mountain ranges, situated on the border of Nong Bua Lamphu, Udon Thani, and Khon Kaen provinces, northeastern Thailand, bear several localities that yield dinosaurs and other vertebrate faunas in the Lower Cretaceous. However, this area has received relatively little attention from the scientific community and the public. Here we review and report new dinosaur materials recovered from this region, some found decades ago, others discovered recently. We identify and discuss their taxonomy and paleobiodiversity. In the Barremian Sao Khua Formation, theropod dinosaurs were represented by spinosaurids, an early branching megaraptoran, a large indeterminate theropod, and small indeterminate theropods. Sauropods were represented by an indeterminate sauropod, a neosauropod, and titanosauriforms, including probable brachiosaurid and non-titanosaur somphospondylans. Other vertebrate groups, including crocodilians, turtles, fishes, and sharks, indicate a similar composition to other Sao Khua Formation communities in northeastern Thailand. The Sao Khua vertebrate assemblage exhibits the taxonomic diversity of dinosaur fauna and is currently the best-documented assemblage in the Early Cretaceous of Southeast Asia. The Aptian–Albian Khok Kruat Formation, however, yields less diverse vertebrates. They are represented by freshwater sharks, crocodilians, and spinosaurid theropods. This may be due to sampling bias, environmental, or taphonomic conditions. This study provides the basis for future paleontological exploration and research of Mesozoic vertebrates in northeastern Thailand.

Nitric oxide signaling in ctenophores.

Nitric oxide (NO) is one of the most ancient and versatile signal molecules across all domains of life. NO signaling might also play an essential role in the origin of animal organization. Yet, practically nothing is known about the distribution and functions of NO-dependent signaling pathways in representatives of early branching metazoans such as Ctenophora. Here, we explore the presence and organization of NO signaling components using Mnemiopsis and kin as essential reference species. We show that NO synthase (NOS) is present in at least eight ctenophore species, including Euplokamis and Coeloplana, representing the most basal ctenophore lineages. However, NOS could be secondarily lost in many other ctenophores, including Pleurobrachia and Beroe. In Mnemiopsis leidyi, NOS is present both in adult tissues and differentially expressed in later embryonic stages suggesting the involvement of NO in developmental mechanisms. Ctenophores also possess soluble guanylyl cyclases as potential NO receptors with weak but differential expression across tissues. Combined, these data indicate that the canonical NO-cGMP signaling pathways existed in the common ancestor of animals and could be involved in the control of morphogenesis, cilia activities, feeding and different behaviors.

Portal Vein Variations, Clinical Correlation, and Embryological Explanation: A Review Article.

Portal vein(PV) is a large vein that collects blood from the abdominal part of gall bladder, pancreas, alimentary tract, and spleen and transports to the liver. One of the parts of the extraembryonic venous system, the vitelline veins, is where PV starts.In about five weeks of gestation, a venous plexus is formed, and variations in this plexus lead to portal variance.Thejunction of superior mesenteric and splenic veins is typically where the vein begins to network. There are five types of branching patterns of the right PV: conventional branching, trifurcation branching, early branching, separate segment 7 branching, and separate segment 6 branching.To perform pancreatic, duodenal, and liver surgeries, knowledge of variations in PV formation is important.For surgical and interventional operations to be accurate, it is crucial to understand the architecture of the PV and its anomalies. As distinct regions of the brain connect with one another, portal architecture is frequently observed in imaging investigations. Portal hypertension is characterized as an increase in blood pressure in the portal venous system (PVS) in the context of severe liver disease, such as cirrhosis. Non-invasive methods for examining the anatomy and anomalies of the PV include ultrasound, computed tomography (CT), and magnetic resonance (MR). There are many abnormalities of PVS that have been discussed in the articles such as Congenital PV Absence; PV Branches Congenitally Grow in Structure; Hypoplasia, Atresia, and Stenosis of the PV; and Portosystemic Shunts.

A comprehensive phylogeny and revised taxonomy illuminate the origin and diversification of the global radiation of Papilio (Lepidoptera: Papilionidae)

The swallowtail genus Papilio (Lepidoptera: Papilionidae) is species rich, distributed worldwide, and has broad morphological habits and ecological niches. Because of its elevated species richness, it has been historically difficult to reconstruct a densely sampled phylogeny for this clade. Here we provide a taxonomic working list for the genus, resulting in 235 Papilio species, and assemble a molecular dataset of seven gene fragments representing ca. 80% of the currently described diversity. Phylogenetic analyses reconstructed a robust tree with highly supported relationships within subgenera, although a few nodes in the early history of the Old World Papilio remain unresolved. Contrasting with previous results, we found that Papilio alexanor is sister to all Old World Papilio and that the subgenus Eleppone is no longer monotypic. The latter includes the recently described Fijian Papilio natewa with the Australian Papilio anactus and is sister to subgenus Araminta (formerly included in subgenus Menelaides) occurring in Southeast Asia. Our phylogeny also includes rarely studied (P. antimachus, P. benguetana) or endangered species (P. buddha, P. chikae). Taxonomic changes resulting from this study are elucidated. Molecular dating and biogeographic analyses indicate that Papilio originated ca. 30 million years ago (Oligocene), in a northern region centered on Beringia. A rapid early Miocene radiation in the Paleotropics is revealed within Old World Papilio, potentially explaining their low early branch support. Most subgenera originated in the early to middle Miocene followed by synchronous southward biogeographic dispersals and repeated local extirpations in northern latitudes. This study provides a comprehensive phylogenetic framework for Papilio with clarification of subgeneric systematics and species taxonomic changes enumerated, which will facilitate further studies to address questions on their ecology and evolutionary biology using this model clade.

A phylogenomic approach to resolving interrelationships of polyclad flatworms, with implications for life-history evolution.

Platyhelminthes (flatworms) are a diverse invertebrate phylum useful for exploring life-history evolution. Within Platyhelminthes, only two clades develop through a larval stage: free-living polyclads and parasitic neodermatans. Neodermatan larvae are considered evolutionarily derived, whereas polyclad larvae are hypothesized to be ancestral due to ciliary band similarities among polyclad and other spiralian larvae. However, larval evolution has been challenging to investigate within polyclads due to low support for deeper phylogenetic relationships. To investigate polyclad life-history evolution, we generated transcriptomic data for 21 species of polyclads to build a well-supported phylogeny for the group. The resulting tree provides strong support for deeper nodes, and we recover a new monophyletic clade of early branching cotyleans. We then used ancestral state reconstructions to investigate ancestral modes of development within Polycladida and more broadly within flatworms. In polyclads, we were unable to reconstruct the ancestral state of deeper nodes with significant support because early branching clades show diverse modes of development. This suggests a complex history of larval evolution in polyclads that likely includes multiple losses and/or multiple gains. However, our ancestral state reconstruction across a previously published platyhelminth phylogeny supports a direct developing prorhynchid/polyclad ancestor, which suggests that a larval stage in the life cycle evolved along the polyclad stem lineage or within polyclads.

Variations in branching pattern of middle cerebral artery using CT angiography in South Indian population

Middle cerebral artery (MCA) variants are rare compared to that of the other two cerebral arteries. Incidence of variations like duplication, fenestration, accessory vessel and early branching ranges from 0.17 to 4%. However, the literature describing MCA variations using CT Angiography (CTA) is limited, so this study was planned to determine the incidence of MCA branching pattern in Indian population using CTA. Datasets of CTA of 578 MCA from 289 patients (180 males and 109 females), with average age of 49.29±16.16 years (range of 11 to 85 years), from a tertiary care hospital were systematically reviewed for variations in branching pattern. Cases involving aneurysms and infarcts were excluded from the study. Four branching patterns of MCA were seen. Pattern I: single trunk in 0.17% (1/578) cases, on left side. Pattern II: early bifurcation in 0.52% (2/578) cases, two cases on right and one on left side. Pattern III: bifurcation, in 97.75%, (565/578) cases, 46.15% (6/13) cases on right and 53.84% (7/13) on left side. Pattern IV: trifurcation, in 1% (6/578), two cases on right and four on left side. Duplicated MCA seen in 0.34% (2/578) cases, both on the right side. The fenestration of MCA seen in 0.17% (1/578), on the left side. No case of accessory MCA was seen. Awareness of these anatomical variations in the branching pattern of MCA is valuable for clinicians and surgeons handling cases of intracranial aneurysms and infarcts. Thus, data from this study would help surgeons minimize errors and provide the best possible outcome to the patients

Prediction of patient choice tendency in medical decision-making based on machine learning algorithm.

Machine learning (ML) algorithms, as an early branch of artificial intelligence technology, can effectively simulate human behavior by training on data from the training set. Machine learning algorithms were used in this study to predict patient choice tendencies in medical decision-making. Its goal was to help physicians understand patient preferences and to serve as a resource for the development of decision-making schemes in clinical treatment. As a result, physicians and patients can have better conversations at lower expenses, leading to better medical decisions. Patient medical decision-making tendencies were predicted by primary survey data obtained from 248 participants at third-level grade-A hospitals in China. Specifically, 12 predictor variables were set according to the literature review, and four types of outcome variables were set based on the optimization principle of clinical diagnosis and treatment. That is, the patient's medical decision-making tendency, which is classified as treatment effect, treatment cost, treatment side effect, and treatment experience. In conjunction with the study's data characteristics, three ML classification algorithms, decision tree (DT), k-nearest neighbor (KNN), and support vector machine (SVM), were used to predict patients' medical decision-making tendency, and the performance of the three types of algorithms was compared. The accuracy of the DT algorithm for predicting patients' choice tendency in medical decision making is 80% for treatment effect, 60% for treatment cost, 56% for treatment side effects, and 60% for treatment experience, followed by the KNN algorithm at 78%, 66%, 74%, 84%, and the SVM algorithm at 82%, 76%, 80%, 94%. At the same time, the comprehensive evaluation index F1-score of the DT algorithm are 0.80, 0.61, 0.58, 0.60, the KNN algorithm are 0.75, 0.65, 0.71, 0.84, and the SVM algorithm are 0.81, 0.74, 0.73, 0.94. Among the three ML classification algorithms, SVM has the highest accuracy and the best performance. Therefore, the prediction results have certain reference values and guiding significance for physicians to formulate clinical treatment plans. The research results are helpful to promote the development and application of a patient-centered medical decision assistance system, to resolve the conflict of interests between physicians and patients and assist them to realize scientific decision-making.

Induced spawning with gamete release from body ruptures during reproduction of Xenoturbella bocki

Xenoturbella is a marine invertebrate with a simple body plan, with recent phylogenomic studies suggesting that it forms the phylum Xenacoelomorpha together with the acoelomorphs. The phylogenetic position of the phylum is still under debate, whether it is an early branching bilaterian or a sister group to the Ambulacraria. Phylogenetic traits often appear during development, and larva resembling the cnidarian planula has been reported for Xenoturbella. However, subsequent developmental studies on Xenoturbella have been scarce. This is mainly due to the difficulties in collecting and keeping adult animals, resulting in the lack of data on the reproduction of the animal, such as the breeding season and the spawning pattern. Here we report on the reproduction of X. bocki and confirm that its breeding season is winter. Spawning induction resulted in gametes being released from body ruptures and not the mouth. No evidence supported the animal as a simultaneous hermaphrodite.