Mitochondria motility and dynamics are tightly linked. Dysfunction in mitochondrial dynamics cause a host of neurological disorders. The outer mitochondrial membrane protein Miro contains two GTPase domains that control mitochondrial dynamics. While it is known that each of Miro's GTPases are responsible for different mitochondrial morphology and localization phenotypes, the biochemical and structural mechanisms are unknown. We have determined the crystal structure of the entire human Miro1 protein in two separate fragments. Using SAXS and MD, we have investigated how the full-length protein assembles. Our structures reveal significant differences between the n-terminal and c-terminal GTPases (nGTPase and cGTPase). In the nGTPase, unique Switch 1 and Switch 2 residues coordinate the bound GTP, Mg2+, and water molecules for hydrolysis. In contrast, the cGTPase shows no large conformational changes between different nucleotide states and may be catalytically inactive. We demonstrate previous activity mutations based on Ras do not represent GDP/GTP states as previously thought. We have also characterized the V. cholera protein VopE, the first GTPase activating protein (GAP) reported for Miro. Using SEC-MALS, SAXS, and NMR, we are studying the structure of VopE and how it interacts with Miro. Combined with previous results and sequence analyses, our structures suggest that Miro's nGTPase, but not its cGTPase, acts as a nucleotide-dependent switch to control mitochondrial morphology. Our new mutagenesis studies and protein activator tools will allow for more careful dissection of Miro's precise function in vivo.