Dynamic Self-assembly Process Research Articles

Imaging collagen type I fibrillogenesis with high spatiotemporal resolution.

Fibrillar collagens, such as collagen type I, belong to the most abundant extracellular matrix proteins and they have received much attention over the last five decades due to their large interactome, complex hierarchical structure and high mechanical stability. Nevertheless, the collagen self-assembly process is still incompletely understood. Determining the real-time kinetics of collagen type I formation is therefore pivotal for better understanding of collagen type I structure and function, but visualising the dynamic self-assembly process of collagen I on the molecular scale requires imaging techniques offering high spatiotemporal resolution. Fast and high-speed scanning atomic force microscopes (AFM) provide the means to study such processes on the timescale of seconds under near-physiological conditions. In this study we have applied fast AFM tip scanning to study the assembly kinetics of fibrillar collagen type I nanomatrices with a temporal resolution reaching eight seconds for a frame size of 500 nm. By modifying the buffer composition and pH value, the kinetics of collagen fibrillogenesis can be adjusted for optimal analysis by fast AFM scanning. We furthermore show that amplitude-modulation imaging can be successfully applied to extract additional structural information from collagen samples even at high scan rates. Fast AFM scanning with controlled amplitude modulation therefore provides a versatile platform for studying dynamic collagen self-assembly processes at high resolution.

Electrostatic Control of Structure in Self‐Assembled Membranes

Self-assembling peptide amphiphiles (PAs) can form hierarchically ordered membranes when brought in contact with aqueous polyelectrolytes of the opposite charge by rapidly creating a diffusion barrier composed of filamentous nanostructures parallel to the plane of the incipient membrane. Following this event, osmotic forces and charge complexation template nanofiber growth perpendicular to the plane of the membrane in a dynamic self-assembly process. In this work, we show that this hierarchical structure requires massive interfacial aggregation of PA molecules, suggesting the importance of rapid diffusion barrier formation. Strong PA aggregation is induced here through the use of heparin-binding PAs with heparin and also with polyelectrolytes of varying charge density. Small angle X-ray scattering shows that in the case of weak PA-polyelectrolyte interaction, membranes formed display a cubic phase ordering on the nanoscale that likely results from clusters of PA nanostructures surrounded by polyelectrolyte chains.

Dynamic Self-Assembly Process of a Designed Peptide

In this paper, we reported the dynamic self-assembly process of an half-sequence ionic self-complementarity peptide CH3CO-Pro-Ser-Phe-Cys-Phe-Lys-Phe-Glu-Pro-NH2, which could self-assemble into stable nanofibers and formed hydrogel consisting of >99% water. The dynamic self-assembly process was detected by circular dichroism (CD) and atomic force microscopy (AFM). CD spectrum revealed that the mainly contents of the peptide were regular β-sheet structure. The data indicated that though the secondary structure of the peptide formed immediately, the microstructure of the self-assembly process of the designed peptide formed slowly. AFM image illustrated that the self-assembly process was layer-by-layer assembly.

Reversible encapsulation of a nitrate guest via hydrogen-bonded self-assembled capsule formation by a flexible tripodal receptor in polar solvent through dynamic self-assembly

Reversible formation of a self-assembled capsule by dimerization of two units of discrete and highly flexible tripodal receptors through multiple hydrogen bonds in polar solvents is reported. The structural scaffold responsible for the capsule formation was prepared by in situ nitration reaction of the N-terminal aromatic ring of the tripodal receptor. The studies show that the nitro group at the ortho position of the N-terminal aromatic ring is mandatory for hydrogen bonded capsule formation and the mode of hydrogen bonding depends upon the electronic nature of the N-terminal aromatic ring. The present approach has been utilized for reversible encapsulation of a weakly coordinating and hydrophilic nitrate anion through a dynamic self-assembly process.

Light scattering study on the dynamic behaviour of cellulose inclusion complex in LiOH/urea aqueous solution

In our previous study, the rapid dissolution of cellulose in alkali/urea aqueous solution at low temperature induced by a dynamic self-assembly process has been demonstrated [1]. The cellulose solution was meta-stable, and its stability could be influenced by system fluctuations (temperature, concentration or time). In the present work, cellulose dissolved in 4.6wt% LiOH/15.0wt% urea aqueous solution pre-cooled to −12 °C was studied by means of dynamic light scattering (DLS). The results revealed that cellulose existed as single inclusion complexes (ICs) associated with LiOH and urea hydrate which could surround the ICs at their surface. And the ICs were stiff, as revealed by results from transmission electron microscopy (TEM) and light scattering (LS). When there was a system fluctuation, the self-association of cellulose with each other took place, resulted from the destruction of the urea shell, and leading to the aggregation of the ICs. For that reason, the ICs stability could be evaluated by the aggregation behaviour. In our findings, the hydrodynamic radius ( R h,app) for the cellulose dispersion in dilute solution shifted to higher values with an increase of the temperature, the concentration or the storage time, indicating an IC aggregation phenomenon.

Reactive Molecular Dynamics Simulation of Fullerene Combustion Synthesis: ReaxFF vs DFTB Potentials.

The dynamic fullerene self-assembly process during benzene combustion was studied using classical Reactive Force Field (ReaxFF) nonequilibrium molecular dynamics (MD) simulations. In order to drive the combustion process, the hydrogen to carbon (H/C) ratio was gradually reduced during the course of the MD simulations. Target temperatures of 2500 and 3000 K were maintained by using a Berendsen thermostat. Simulation conditions and hydrogen removal strategies were chosen to match closely a previous quantum chemical MD (QM/MD) study based on the density-functional tight-binding (DFTB) potential ( Saha et al. ACS Nano 2009 , 3 , 2241 ) to allow a comparison between the two different potentials. Twenty trajectories were computed at each target temperature, and hydrocarbon cluster size, CxHy composition, average carbon cluster curvature, carbon hybridization type, and ring count statistics were recorded as a function of time. Similarly as in the QM/MD simulations, only giant fullerene cages in the range from 155 to 212 carbon atoms self-assembled, and no C60 cages were observed. The most notable difference concerned the time required for completing cage self-assembly: Depending on temperature, it takes between 50 and 150 ps in DFTB/MD simulations but never less than 100 ps and frequently several 100s ps in ReaxFF/MD simulations. In the present system, the computational cost of ReaxFF/MD is about 1 order of magnitude lower than that of the corresponding DFTB/MD. Overall, the ReaxFF/MD simulations method paints a qualitatively similar picture of fullerene formation in benzene combustion when compared to direct MD simulations based on the DFTB potential.

Distinct roles of extracellular polymeric substances in Pseudomonas aeruginosa biofilm development

Bacteria form surface attached biofilm communities as one of the most important survival strategies in nature. Biofilms consist of water, bacterial cells and a wide range of self-generated extracellular polymeric substances (EPS). Biofilm formation is a dynamic self-assembly process and several distinguishable stages are observed during bacterial biofilm development. Biofilm formation is shown to be coordinated by EPS production, cell migration, subpopulation differentiation and interactions. However, the ways these different factors affect each other and contribute to community structural differentiation remain largely unknown. The distinct roles of different EPS have been addressed in the present report. Both Pel and Psl polysaccharides are required for type IV pilus-independent microcolony formation in the initial stages of biofilm formation by Pseudomonas aeruginosa PAO1. Both Pel and Psl polysaccharides are also essential for subpopulation interactions and macrocolony formation in the later stages of P. aeruginosa PAO1 biofilm formation. Pel and Psl polysaccharides have different impacts on Pseudomonas quinolone signal-mediated extracellular DNA release in P. aeruginosa PAO1 biofilms. Psl polysaccharide is more important than Pel polysaccharide in P. aeruginosa PAO1 biofilm formation and antibiotic resistance. Our study thus suggests that different EPS materials play distinct roles during bacterial biofilm formation.

Dynamic self-assembly of molecular capsules via solvent polarity controlled reversible binding of nitrate anions with C3 symmetric tripodal receptors

A series of N-bridgehead tripodal receptors bearing amide functionality is reported which displays reversible binding of nitrate anions via solvent polarity controlled molecular capsule formation through a dynamic self-assembly process.

Dynamic self-assembly and control of microfluidic particle crystals

Engineered two-phase microfluidic systems have recently shown promise for computation, encryption, and biological processing. For many of these systems, complex control of dispersed-phase frequency and switching is enabled by nonlinearities associated with interfacial stresses. Introducing nonlinearity associated with fluid inertia has recently been identified as an easy to implement strategy to control two-phase (solid-liquid) microscale flows. By taking advantage of inertial effects we demonstrate controllable self-assembling particle systems, uncover dynamics suggesting a unique mechanism of dynamic self-assembly, and establish a framework for engineering microfluidic structures with the possibility of spatial frequency filtering. Focusing on the dynamics of the particle-particle interactions reveals a mechanism for the dynamic self-assembly process; inertial lift forces and a parabolic flow field act together to stabilize interparticle spacings that otherwise would diverge to infinity due to viscous disturbance flows. The interplay of the repulsive viscous interaction and inertial lift also allow us to design and implement microfluidic structures that irreversibly change interparticle spacing, similar to a low-pass filter. Although often not considered at the microscale, nonlinearity due to inertia can provide a platform for high-throughput passive control of particle positions in all directions, which will be useful for applications in flow cytometry, tissue engineering, and metamaterial synthesis.

Selective Formation of a Linear-Shaped Bundle of Microtubules

By using rigid microtubules (MTs) prepared by polymerization with guanylyl-(alpha, beta)-methylene-diphosphonate GMPCPP, giant straight-shaped MT bundles were selectively obtained through a dynamic self-assembly process. We demonstrate the effect of the rigidity on the shape and motility of MT bundle composed of GMPCPP-polymerized MTs (GMPCPP-MTs) compared with control MTs that were polymerized with GTP and stabilized with paclitaxel.

Dynamic Self-Assembly Induced Rapid Dissolution of Cellulose at Low Temperatures

Cellulose can be dissolved in precooled (−12 °C) 7 wt % NaOH−12 wt % urea aqueous solution within 2 min. This interesting process, to our knowledge, represents the most rapid dissolution of native cellulose. The results from 13C NMR, 15N NMR, 1H NMR, FT-IR, small-angle neutron scattering (SANS), transmission electron microscopy (TEM), and wide-angle X-ray diffraction (WAXD) suggested that NaOH “hydrates” could be more easily attracted to cellulose chains through the formation of new hydrogen-bonded networks at low temperatures, while the urea hydrates could not be associated directly with cellulose. However, the urea hydrates could possibly be self-assembled at the surface of the NaOH hydrogen-bonded cellulose to form an inclusion complex (IC), leading to the dissolution of cellulose. Scattering experiments, including dynamic and static light scattering, indicated that most cellulose molecules, with limited amounts of aggregation, could exist as extended rigid chains in dilute solution. Further, the cellulose solution was relatively unstable and could be very sensitive to temperature, polymer concentration, and storage time, leading to additional aggregations. TEM images and WAXD provided experimental evidence on the formation of a wormlike cellulose IC being surrounded with urea. Therefore, we propose that the cellulose dissolution at −12 °C could arise as a result of a fast dynamic self-assembly process among solvent small molecules (NaOH, urea, and water) and the cellulose macromolecules.

Polyelectrolyte membranes prepared by dynamic self-assembly of poly (4-styrenesulfonic acid- co-maleic acid) sodium salt (PSSMA) for nanofiltration (I)

In recent years, the layer-by-layer (LBL) self-assembly of polyelectrolyte has attracted much attention for the preparation of nanofiltration (NF) membranes. However, most researchers focused on the homopolymers, few studied on the copolymers for the preparation of NF membranes. In the present work, a series of nanofiltration membranes were prepared by dynamic self-assembly of a copolymer polyelectrolyte containing both weakly and strongly ionized groups, poly (4-styrenesulfonic acid- co-maleic acid) sodium salt (PSSMA), with poly (allylamine hydrochloride) (PAH) and poly (styrenesulfonic acid sodium salt) (PSS) on the modified polyacrylonitrile (PAN) ultra-filtration membranes. The effects of substrate, deposition pH, SS/MA ratio in PSSMA, concentration of the PSSMA and bilayer number on the properties of the NF membranes were investigated. The results indicated that the performances of the NF membranes prepared by dynamic self-assembly process were superior to those prepared by the static self-assembly process. The membranes terminated with PSSMA were negatively charged. Due to the changes of charge density and conformation of PSSMA in different pH conditions, the [PAH/PSS] 1PAH/PSSMA membrane prepared at pH 2.5 showed higher Na 2SO 4 rejection and larger flux than those of the membrane prepared at pH 5.7. The NF membrane [PAH/PSS] 1PAH/PSSMA composed of only two bilayers exhibited 91.4% Na 2SO 4 rejection and allowed solution flux of 28.6 L/m 2 h at 0.2 MPa. The solution flux increased to 106.6 L/m 2 h at 0.8 MPa, meanwhile, no obvious decrease in Na 2SO 4 rejection was observed.

The self-assembly of monodisperse nanospheres within microtubes

Self-assembled monodisperse nanospheres within microtubes have been fabricated andcharacterized. In comparison with colloidal crystals formed on planar substrates, colloidalnanocrystals self-assembled in microtubes demonstrate high spatial symmetry in theiroptical transmission and reflection properties. The dynamic self-assembly process insidemicrotubes is investigated by combining temporal- and spatial-spectrophotometricmeasurements. The understanding of this process is achieved through both experimentallyrecorded reflection spectra and finite difference time domain (FDTD)-based simulationresults.

Visualization of Flow-Aligned Type I Collagen Self-Assembly in Tunable pH Gradients

Collagen is a major component of the extracellular matrix that exhibits unique hierarchical organization at multiple length scales ranging from nano to macroscale. Despite numerous methods to create collagen-based biomaterials, the self-assembly process of collagen ex vivo is poorly understood. Here, we describe a system that uses a microfluidic method to investigate the dynamics of collagen self-assembly. A main inlet stream of semidilute soluble collagen-I is hydrodynamically focused by two side inlet streams, which gradually increases the pH in the main stream. This enables dynamic nonequilibrium investigation of the self-assembly process simultaneously at different positions and therefore different stages in the assembly process within the same system. The device is designed for in situ monitoring and characterization of collagen assembly using polarization microscopy and X-ray diffraction: the continuous extensional flow provides highly ordered phases of the macromolecules over a large distance in the outlet microchannel and allows for data collection without material damage. We further demonstrate that finite element method simulations provide a good description of our experimental results regarding the diffusive phenomena, flow profile, and pH distribution. Our approach has broad impact, since it provides a powerful means of controlling and investigating the dynamic self-assembly process of biomacromolecules.