The proliferation of counterfeit goods and data privacy concerns in global supply chain operations poses a significant risk to organizations and end-users alike. This paper explores the integration of blockchain technology and homomorphic encryption as dual mechanisms to enhance security and privacy in project management and supply chain operations. Blockchain offers an immutable, decentralized ledger that provides traceability and authenticity across supply chain nodes, while homomorphic encryption enables secure data processing and analysis without compromising sensitive information. The synergy of these technologies presents a robust framework to address counterfeit risks, facilitating end-to-end product authentication and allowing for secure, real-time collaboration in project management settings. This integration minimizes vulnerabilities in data handling and improves compliance with privacy regulations by securing data at rest and in transit. By evaluating case studies and recent advancements, this paper highlights the potential of blockchain and homomorphic encryption to redefine security protocols, fostering a trustworthy and resilient supply chain ecosystem. Future research directions are recommended to expand the practical applications and address scalability challenges associated with these emerging technologies.