To investigate the impact of heating on the nutritional and antioxidant properties of lotus root, a comparative analysis was conducted between its heated and unheated whole powders. The whole powder of heated lotus root (HLRWP) exhibited a higher level of total soluble sugars but a lower level of free phenolic compounds compared to the whole powder of fresh lotus root (FLRWP). Meanwhile, they showed significant differences in metabolite composition encompassing phenolic compounds, flavonoids, amino acids, vitamins and lipids. The replacement of sugar and corn in the medium with 25% HLRWP effectively enhanced the activities of antioxidant enzymes (total superoxide dismutase and catalase), while reducing malonaldehyde content in Drosophila melanogaster males. The average, median and maximum lifespans of the fruit flies were extended by 35.90%, 23.49% and 24.00% respectively, accompanied by an improvement in climbing ability. Additionally, their resistance to oxidative stress induced by hydrogen peroxide or paraquat was enhanced. The antioxidant capacity of HLRWP in vivo was found to be obviously stronger compared to FLRWP, which may have a crucial association with the regulation of L-arginine and adenosine monophosphate levels. The results indicate that heating can enhance the nutritional quality of lotus root products by strengthening their antioxidant capacity.