We develop a numerical method for simulating the dynamics of a droplet immersed in a generic time-dependent velocity gradient field. This approach is grounded on the hybrid coupling between the lattice Boltzmann (LB) method, employed for the flow simulation, and the immersed boundary (IB) method, utilized to couple the droplet with the surrounding fluid. We show how to enrich the numerical scheme with a mesh regularization technique, allowing droplets to sustain large deformations. The resulting methodology is adapted to simulate the dynamics of droplets in homogeneous and isotropic turbulence, with the characteristic size of the droplet being smaller than the characteristic Kolmogorov scale of the outer turbulent flow. We report statistical results for droplet deformation and orientation collected from an ensemble of turbulent trajectories, as well as comparisons with theoretical models in the limit of small deformation.