Quantitative information obtained from drift tube detectors used in ion mobility spectrometry is contained in the area of peaks forming the drift time spectrum. The area of all peaks corresponds to the total charge of ions entering the drift section of the spectrometer. It was found that this charge is not conserved when the ion composition changes. This work is devoted to studying the causes of this phenomenon. Experimental research consisted of recording drift time spectra for 2-pentanone and n-heptanone, at various analyte concentrations and different opening times of the shutter grid. Measurements of the total ion current were also performed in static mode with an open grid. The research results indicated that the reasons for the lack of ion charge conservation in the drift time spectrum are ion recombination, mutual repulsion, and mobility-dependent transmission of ions through the shutter grid. The explanation of the relationships obtained experimentally was based on a simple theoretical model, which considered the phenomenon of ion transport along the reaction section and the penetration of ions through the shutter. The developed model provides a good description of the measurement results and allows the estimation of ion currents and ion concentrations in the reaction section upstream of the grid. This information is important for proper quantitative analysis as well as when the ion mobility spectrometer is used in quantitative studies of chemical ionization processes.