Down-regulation Of Photosynthesis Research Articles

A reduction in metabolism explains the tradeoffs associated with the long-term adaptation of phytoplankton to high CO2 concentrations.

Phytoplankton are responsible for nearly half of global primary productivity and play crucial roles in the Earth's biogeochemical cycles. However, the long-term adaptive responses of phytoplankton to rising CO2 remains unknown. Here we examine the physiological and proteomics responses of a marine diatom, Phaeodactylum tricornutum, following long-term (c. 900 generations) selection to high CO2 conditions. Our results show that this diatom responds to long-term high CO2 selection by downregulating proteins involved in energy production (Calvin cycle, tricarboxylic acid cycle, glycolysis, oxidative pentose phosphate pathway), with a subsequent decrease in photosynthesis and respiration. Nearly similar extents of downregulation of photosynthesis and respiration allow the high CO2 -adapted populations to allocate the same fraction of carbon to growth, thereby maintaining their fitness during the long-term high CO2 selection. These results indicate an important role of metabolism reduction under high CO2 and shed new light on the adaptive mechanisms of phytoplankton in response to climate change.

Short-term exposure to elevated CO2 stimulates growth and metabolic responses that alleviate early-stage iron deficiency symptoms in soybean

ABSTRACT Elevated CO2 (eCO2) increase plant biomass and might lead to nutritional losses. The results showed that eCO2 under Fe-deficiency stimulates root dry weight from 0.37–0.80 g plant−1 and shoot dry weight from 0.82–2.10 g plant−1, without compromising root/shoot ratio. Besides, eCO2 improved the chlorophyl content of Fe-deficient plants. However, downregulation of photosynthesis, reduction in stomatal conductance and transpiration rate, and an increase in water-use efficiency was observed due to eCO2. Moreover, under Fe-deficiency, eCO2 decreased K and Mg in roots, and Mg in leaves, whereas increased P and Zn in roots and leaves. In Fe-sufficient plants, eCO2 increased K, P, Mn, Zn and Fe in leaves and did not change the concentration in roots. The Fe-deficiency-induced responses in roots, including the increase in FCR activity, and the expression of Fe-uptake genes were stimulated by eCO2, but were not sufficient to increase Fe concentration in Fe-deficient plants.

Elucidating the role of SWEET13 in phloem loading of the C4 grass Setaria viridis.

Photosynthetic efficiency and sink demand are tightly correlated with rates of phloem loading, where maintaining low cytosolic sugar concentrations is paramount to prevent the downregulation of photosynthesis. Sugars Will Eventually be Exported Transporters (SWEETs) are thought to have a pivotal role in the apoplastic phloem loading of C4 grasses. SWEETs have not been well studied in C4 species, and their investigation is complicated by photosynthesis taking place across two cell types and, therefore, photoassimilate export can occur from either one. SWEET13 homologues in C4 grasses have been proposed to facilitate apoplastic phloem loading. Here, we provide evidence for this hypothesis using the C4 grass Setaria viridis. Expression analyses on the leaf gradient of C4 species Setaria and Sorghum bicolor show abundant transcript levels for SWEET13 homologues. Carbohydrate profiling along the Setaria leaf shows total sugar content to be significantly higher in the mature leaf tip compared with the younger tissue at the base. We present the first known immunolocalization results for SvSWEET13a and SvSWEET13b using novel isoform-specific antisera. These results show localization to the bundle sheath and phloem parenchyma cells of both minor and major veins. We further present the first transport kinetics study of C4 monocot SWEETs by using a Xenopus laevis oocyte heterologous expression system. We demonstrate that SvSWEET13a and SvSWEET13b are high-capacity transporters of glucose and sucrose, with a higher apparent Vmax for sucrose, compared with glucose, typical of clade III SWEETs. Collectively, these results provide evidence for an apoplastic phloem loading pathway in Setaria and possibly other C4 species.

Changes in photosynthesis and chlorophyll a fluorescence in relation to leaf temperature from just before to after harvest of Vitis vinifera cv. Shiraz vines grown in outdoor conditions.

Harvesting fruit from horticultural species causes a down-regulation of photosynthesis but some species can recover after harvest. The objective of this study was to assess the hypothesis that the impact of fruit removal on the photosynthetic performance of Shiraz grapevines, in relation to CO2 concentration and leaf temperature, would contribute to a depreciation in photosynthetic assimilation. To assess this hypothesis, vines that were continuously vegetative were compared with vines that were harvested when fruit were ripe. These fruiting vines had higher rates of CO2 -limited photosynthesis at all leaf temperatures compared to vegetative vines before harvest but after, photosynthetic rates were highest in vegetative vines. There were few treatment differences in CO2 -saturated photosynthesis before harvest but after, below about 30°C, the harvested vines had higher photosynthesis than the vegetative vines. Maximum rates of ribulose 1,5 bisphosphate (RuBP) carboxylation and regeneration and responses to temperature were unaffected by differences in sink demand but after harvest, maximum rates increased, but markedly more in the vegetative vines, especially at higher temperatures. This conformed to higher photosynthetic rates in the vegetative vines. There were no sink demand effects on chlorophyll a fluorescence, consistent with the evidence that the fruit sink removal probably affected Rubisco activity and performance. The conclusion that sink removal caused a depreciation in photosynthesis was sustained but the temperature had a strong modulating effect through both stomatal and non-stomatal limitations driving the depreciation in assimilation. What was less clear was why assimilation of continuously vegetative vines increased during the harvest time when there were no apparent changes in sink demand.

Drone-based physiological index reveals long-term acclimation and drought stress responses in trees.

Monitoring early tree physiological responses to drought is key to understanding progressive impacts of drought on forests and identifying resilient species. We combined drone‐based multispectral remote sensing with measurements of tree physiology and environmental parameters over two growing seasons in a 100‐y‐old Pinus sylvestris forest subject to 17‐y of precipitation manipulation. Our goal was to determine if drone‐based photochemical reflectance index (PRI) captures tree drought stress responses and whether responses are affected by long‐term acclimation. PRI detects changes in xanthophyll cycle pigment dynamics, which reflect increases in photoprotective non‐photochemical quenching activity resulting from drought‐induced photosynthesis downregulation. Here, PRI of never‐irrigated trees was up to 10 times lower (higher stress) than PRI of irrigated trees. Long‐term acclimation to experimental treatment, however, influenced the seasonal relationship between PRI and soil water availability. PRI also captured diurnal decreases in photochemical efficiency, driven by vapour pressure deficit. Interestingly, 5 years after irrigation was stopped for a subset of the irrigated trees, a positive legacy effect persisted, with lower stress responses (higher PRI) compared with never‐irrigated trees. This study demonstrates the ability of remotely sensed PRI to scale tree physiological responses to an entire forest and the importance of long‐term acclimation in determining current drought stress responses.

Down-Regulation of Photosynthesis to Elevated CO2 and N Fertilization in Understory Fraxinus rhynchophylla Seedlings

(1) Background: Down-regulation of photosynthesis has been commonly reported in elevated CO2 (eCO2) experiments and is accompanied by a reduction of leaf nitrogen (N) concentration. Decreased N concentrations in plant tissues under eCO2 can be attributed to an increase in nonstructural carbohydrate (NSC) and are possibly related to N availability. (2) Methods: To examine whether the reduction of leaf N concentration under eCO2 is related to N availability, we investigated understory Fraxinus rhynchophylla seedlings grown under three different CO2 conditions (ambient, 400 ppm [aCO2]; ambient × 1.4, 560 ppm [eCO21.4]; and ambient × 1.8, 720 ppm [eCO21.8]) and three different N concentrations for 2 years. (3) Results: Leaf and stem biomass did not change under eCO2 conditions, whereas leaf production and stem and branch biomass were increased by N fertilization. Unlike biomass, the light-saturated photosynthetic rate and photosynthetic N-use efficiency (PNUE) increased under eCO2 conditions. However, leaf N, Rubisco, and chlorophyll decreased under eCO2 conditions in both N-fertilized and unfertilized treatments. Contrary to the previous studies, leaf NSC decreased under eCO2 conditions. Unlike leaf N concentration, N concentration of the stem under eCO2 conditions was higher than that under ambient CO2 (4). Conclusions: Leaf N concentration was not reduced by NSC under eCO2 conditions in the understory, and unlike other organs, leaf N concentration might be reduced due to increased PNUE.

Cold-Triggered Induction of ROS- and Raffinose Metabolism in Freezing-Sensitive Taproot Tissue of Sugar Beet.

Sugar beet (Beta vulgaris subsp. vulgaris) is the exclusive source of sugar in the form of sucrose in temperate climate zones. Sugar beet is grown there as an annual crop from spring to autumn because of the damaging effect of freezing temperatures to taproot tissue. A collection of hybrid and non-hybrid sugar beet cultivars was tested for winter survival rates and freezing tolerance. Three genotypes with either low or high winter survival rates were selected for detailed study of their response to frost. These genotypes differed in the severity of frost injury in a defined inner region in the upper part of the taproot, the so-called pith. We aimed to elucidate genotype- and tissue-dependent molecular processes during freezing and combined analyses of sugar beet anatomy and physiology with transcriptomic and metabolite profiles of leaf and taproot tissues at low temperatures. Freezing temperatures induced strong downregulation of photosynthesis in leaves, generation of reactive oxygen species (ROS), and ROS-related gene expression in taproots. Simultaneously, expression of genes involved in raffinose metabolism, as well as concentrations of raffinose and its intermediates, increased markedly in both leaf and taproot tissue at low temperatures. The accumulation of raffinose in the pith tissue correlated with freezing tolerance of the three genotypes. We discuss a protective role for raffinose and its precursors against freezing damage of sugar beet taproot tissue.

Down-regulation of photosynthesis and its relationship with changes in leaf N allocation and N availability after long-term exposure to elevated CO2 concentration

Down-regulation of photosynthesis under elevated CO2 (eCO2) concentrations could be attributed to the depletion of nitrogen (N) availability after long-term exposure to eCO2 (progressive nitrogen limitation, PNL) or leaf N dilutions due to excessive accumulation of nonstructural carbohydrates. To determine the mechanism underlying this down-regulation, we investigated N availability, photosynthetic characteristics, and N allocation in leaves of Pinus densiflora (shade-intolerant species, evergreen tree), Fraxinus rhynchophylla (intermediate shade-tolerant species, deciduous tree), and Sorbus alnifolia (shade-tolerant species, deciduous tree). The three species were grown under three different CO2 concentrations in open-top chambers, i.e., ambient 400 ppm (aCO2); ambient × 1.4, 560 ppm (eCO21.4); and ambient × 1.8, 720 ppm (eCO21.8), for 11 years. Unlike previous studies that addressed PNL, after 11 years of eCO2 exposure, N availability remained higher under eCO21.8, and chlorophyll and photosynthetic N use efficiency increased under eCO2. In the case of nonstructural carbohydrates, starch and soluble sugar showed significant increases under eCO2. The maximum carboxylation rate, leaf N per mass (Nmass), and ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) were low under eCO21.8. The ratio of RuBP regeneration to the carboxylation rate as well as that of chlorophyll N to Rubisco N increased with CO2 concentrations. Based on the reduction in Nmass (not in Narea) that was diluted by increase in nonstructural carbohydrate, down-regulation of photosynthesis was found to be caused by the dilution rather than PNL. The greatest increases in chlorophyll under eCO2 were observed in S. alnifolia, which was the most shade-tolerant species. This study could help provide more detailed, mechanistically based processes to explain the down-regulation of photosynthesis by considering two hypotheses together and showed N allocation seems to be flexible against changes in CO2 concentration.

Autumn Warming Delays the Downregulation of Photosynthesis and Does Not Increase the Risk of Freezing Damage in Interior and Coastal Douglas-fir

During autumn, evergreen conifers utilize the decrease in daylength and temperature as environmental signals to trigger cold acclimation, a process that involves the downregulation of photosynthesis, upregulation of photoprotection, and development of cold hardiness. Global warming will delay the occurrence of autumn low temperatures while daylength remains unaffected. The impact of autumn warming on cold acclimation and the length of the carbon uptake period of species with ranges that encompass diverse climates, such as Douglas-fir (Pseudotsuga menziesii), remains unclear. Our study investigated intraspecific variation in the effects of autumn warming on photosynthetic activity, photosynthetic pigments, and freezing tolerance in two interior (var. glauca) and two coastal (var. menziesii) Douglas-fir provenances. Following growth under simulated summer conditions with long days (16 h photoperiod) and summer temperatures (22/13°C day/night), Douglas-fir seedlings were acclimated to simulated autumn conditions with short days (8 h photoperiod) and either low temperatures (cool autumn, CA; 4/−4°C day/night) or elevated temperatures (warm autumn, WA; 19/11°C day/night). Exposure to low temperatures in the CA treatment induced the downregulation of photosynthetic carbon assimilation and photosystem II efficiency, increased the size and de-epoxidation of the xanthophyll cycle pigment pool, and caused the development of sustained nonphotochemical quenching (NPQ). Seedlings in the WA treatment exhibited no downregulation of photosynthesis, no change in xanthophyll cycle pigment de-epoxidation, and no development of sustained NPQ. Albeit these changes, freezing tolerance was not impaired under WA conditions compared with CA conditions. Interior Douglas-fir seedlings developed greater freezing tolerance than coastal seedlings. Our findings suggest that autumn warming, i.e., short photoperiod alone, does not induce the downregulation of photosynthesis in Douglas-fir. Although autumn warming delays the downregulation of photosynthesis, the prolonged period of photosynthetic activity does not bear a trade-off of impaired freezing tolerance.

Does the Removal of Non-Photosynthetic Sections Lead to a Down-Regulation of Photosynthesis in Mosses? A First Experiment

When measuring photosynthesis in mosses, the non-photosynthetic (brown) sections are usually removed and only the green sections are measured. However, how this pretreatment affects photosynthesis rates is unclear. Therefore, we studied the effect of removing the non-photosynthetic sections in three moss species with distinct morphological and stem-anatomical structures, comparing net CO2 assimilation rates (AN) of detached green and brown sections to those of intact shoots. Right after separation, the summed AN of the separated sections was significantly lower than those of the intact shoots for Pogonatum nudiusculum Mitt. and Pleuroziopsis ruthenica (Weinm.) Kindb. ex E. Britton, while no significant difference was found for Actinothuidium hookeri (Mitt.) Broth. However, AN recovered within a day, and the progressive reduction of AN expected if carbon-sink removal was an important mechanism was not observed. Our study indicates that removal of non-photosynthetic sections results in an underestimation of the photosynthetic capacity of the green moss sections, but only for the species with relatively complex internal transport structures, and only immediately after the separation. The fast and transient response suggests a mechanism via an electrical signal induced by wounding or reduced hydraulic integrity, rather than through a reduced carbon-sink strength. More comprehensive investigations on signaling and other mechanisms regulating moss photosynthesis will contribute to more accurate measurement methods as well as a deeper understanding of moss ecophysiology and the contribution of mosses to carbon fluxes in terrestrial ecosystems.

Nitrogen, phosphorus and high CO2 modulate photosynthesis, biomass and lipid production in the green alga Chlorella vulgaris.

Climate change could impact nutrient bioavailability in aquatic environment. To understand the interaction of nutrient bioavailability and elevated CO2, Chlorella vulgaris cells were grown in ambient air or 5% CO2 in different concentrations of nitrogen and phosphorus in a photobioreactor. The chlorophyll content, photosynthesis and respiration rates increased in 5% CO2 to support higher biomass production. The nutrient limitation in the growth media resulted in reduced photosynthetic rates of the algal cells and their PSI, PSII, and whole chain electron transport rates and biomass production. Conversely, their lipid content increased partly due to upregulation of expression of several lipid biosynthesis genes. The order of downregulation of photosynthesis and upregulation in lipid production due to nutrient limitation was in the order of N > P. The N-50 and 5% CO2 culture had only 10% reduction in biomass and 32% increase in lipids having 85% saturated fat required for efficient biofuel production. This growth condition is ideal for generation of biodiesel required to reduce the consumption of fossil fuel and combat global warming.

Functional characterization of proton antiport regulation in the thylakoid membrane.

During photosynthesis, energy is transiently stored as an electrochemical proton gradient across the thylakoid membrane. The resulting proton motive force (pmf) is composed of a membrane potential (ΔΨ) and a proton concentration gradient (ΔpH) and powers the synthesis of ATP. Light energy availability for photosynthesis can change very rapidly and frequently in nature. Thylakoid ion transport proteins buffer the effects that light fluctuations have on photosynthesis by adjusting pmf and its composition. Ion channel activities dissipate ΔΨ, thereby reducing charge recombinations within photosystem II. The dissipation of ΔΨ allows for increased accumulation of protons in the thylakoid lumen, generating the signal that activates feedback downregulation of photosynthesis. Proton export from the lumen via the thylakoid K+ exchange antiporter 3 (KEA3), instead, decreases the ΔpH fraction of the pmf and thereby reduces the regulatory feedback signal. Here, we reveal that the Arabidopsis (Arabidopsis thaliana) KEA3 protein homo-dimerizes via its C-terminal domain. This C-terminus has a regulatory function, which responds to light intensity transients. Plants carrying a C-terminus-less KEA3 variant show reduced feed-back downregulation of photosynthesis and suffer from increased photosystem damage under long-term high light stress. However, during photosynthetic induction in high light, KEA3 deregulation leads to an increase in carbon fixation rates. Together, the data reveal a trade-off between long-term photoprotection and a short-term boost in carbon fixation rates, which is under the control of the KEA3 C-terminus.

Implementation of nitrogen cycle in the CLASSIC land model

Abstract. A terrestrial nitrogen (N) cycle model is coupled to the carbon (C) cycle in the framework of the Canadian Land Surface Scheme Including Biogeochemical Cycles (CLASSIC). CLASSIC currently models physical and biogeochemical processes and simulates fluxes of water, energy, and CO2 at the land–atmosphere boundary. CLASSIC is similar to most models and its gross primary productivity increases in response to increasing atmospheric CO2 concentration. In the current model version, a downregulation parameterization emulates the effect of nutrient constraints and scales down potential photosynthesis rates, using a globally constant scalar, as a function of increasing CO2. In the new model when nitrogen (N) and carbon (C) cycles are coupled, cycling of N through the coupled soil–vegetation system facilitates the simulation of leaf N amount and maximum carboxylation capacity (Vcmax) prognostically. An increase in atmospheric CO2 decreases leaf N amount and therefore Vcmax, allowing the simulation of photosynthesis downregulation as a function of N supply. All primary N cycle processes that represent the coupled soil–vegetation system are modelled explicitly. These include biological N fixation; treatment of externally specified N deposition and fertilization application; uptake of N by plants; transfer of N to litter via litterfall; mineralization; immobilization; nitrification; denitrification; ammonia volatilization; leaching; and the gaseous fluxes of NO, N2O, and N2. The interactions between terrestrial C and N cycles are evaluated by perturbing the coupled soil–vegetation system in CLASSIC with one forcing at a time over the 1850–2017 historical period. These forcings include the increase in atmospheric CO2, change in climate, increase in N deposition, and increasing crop area and fertilizer input, over the historical period. An increase in atmospheric CO2 increases the C:N ratio of vegetation; climate warming over the historical period increases N mineralization and leads to a decrease in the vegetation C:N ratio; N deposition also decreases the vegetation C:N ratio. Finally, fertilizer input increases leaching, NH3 volatilization, and gaseous losses of N2, N2O, and NO. These model responses are consistent with conceptual understanding of the coupled C and N cycles. The simulated terrestrial carbon sink over the 1959–2017 period, from the simulation with all forcings, is 2.0 Pg C yr−1 and compares reasonably well with the quasi observation-based estimate from the 2019 Global Carbon Project (2.1 Pg C yr−1). The contribution of increasing CO2, climate change, and N deposition to carbon uptake by land over the historical period (1850–2017) is calculated to be 84 %, 2 %, and 14 %, respectively.

Quantitative Proteomic Profiling of Marine Diatom Skeletonema dohrnii in Response to Temperature and Silicate Induced Environmental Stress.

Global warming is expected to reduce the nutrient concentration in the upper ocean and affect the physiology of marine diatoms, but the underlying molecular mechanisms controlling these physiological changes are currently unknown. To understand these mechanisms, here we investigated iTRAQ based proteomic profiling of diatom Skeletonema dohrnii in a multifactorial experimental with a combining change of temperature and silicate concentrations. In total, 3369 differently abundant proteins were detected in four different environmental conditions, and the function of all proteins was identified using Gene Ontology and KEGG pathway analysis. For discriminating the proteome variation among samples, multivariate statistical analysis (PCA, PLS-DA) was performed by comparing the protein ratio differences. Further, performing pathway analysis on diatom proteomes, we here demonstrated downregulation of photosynthesis, carbon metabolism, and ribosome biogenesis in the cellular process that leads to decrease the oxidoreductase activity and affects the cell cycle of the diatom. Using PLS-DA VIP score plot analysis, we identified 15 protein biomarkers for discriminating studied samples. Of these, five proteins or gene (rbcL, PRK, atpB, DNA-binding, and signal transduction) identified as key biomarkers, induced by temperature and silicate stress in diatom metabolism. Our results show that proteomic finger-printing of S. dohrnii with different environmental conditions adds biological information that strengthens marine phytoplankton proteome analysis.

Interactive Effect of Elevated CO2 and Reduced Summer Precipitation on Photosynthesis is Species-Specific: The Case Study with Soil-Planted Norway Spruce and Sessile Oak in a Mountainous Forest Plot

We investigated how reduced summer precipitation modifies photosynthetic responses of two model tree species—coniferous Norway spruce and broadleaved sessile oak—to changes in atmospheric CO2 concentration. Saplings were grown under mountainous conditions for two growing seasons at ambient (400 μmol CO2 mol–1) and elevated (700 μmol CO2 mol–1) CO2 concentration. Half were not exposed to precipitation during the summer (June–August). After two seasons of cultivation under modified conditions, basic photosynthetic characteristics including light-saturated rate of CO2 assimilation (Amax), stomatal conductance (GSmax), and water use efficiency (WUE) were measured under their growth CO2 concentrations together with in vivo carboxylation rate (VC) and electron transport rate (J) derived from CO2-response curves at saturating light. An increase in Amax under elevated CO2 was observed in oak saplings, whereas it remained unchanged or slightly declined in Norway spruce, indicating a down-regulation of photosynthesis. Such acclimation was associated with an acclimation of both J and VC. Both species had increased WUE under elevated CO2 although, in well-watered oaks, WUE remained unchanged. Significant interactive effects of tree species, CO2 concentration, and water availability on gas-exchange parameters (Amax, GSmax, WUE) were observed, while there was no effect on biochemical (VC, J) and chlorophyll fluorescence parameters. The assimilation capacity (Asat; CO2 assimilation rate at saturating light intensity and CO2 concentration) was substantially reduced in spruce under the combined conditions of water deficiency and elevated CO2, but not in oak. In addition, the stimulatory effect of elevated CO2 on Amax persisted in oak, but completely diminished in water-limited spruce saplings. Our results suggest a strong species-specific response of trees to reduced summer precipitation under future conditions of elevated CO2 and a limited compensatory effect of elevated CO2 on CO2 uptake under water-limited conditions in coniferous spruce.

Transcriptomic Leaf Profiling Reveals Differential Responses of the Two Most Traded Coffee Species to Elevated [CO2

As atmospheric [CO2] continues to rise to unprecedented levels, understanding its impact on plants is imperative to improve crop performance and sustainability under future climate conditions. In this context, transcriptional changes promoted by elevated CO2 (eCO2) were studied in genotypes from the two major traded coffee species: the allopolyploid Coffea arabica (Icatu) and its diploid parent, C. canephora (CL153). While Icatu expressed more genes than CL153, a higher number of differentially expressed genes were found in CL153 as a response to eCO2. Although many genes were found to be commonly expressed by the two genotypes under eCO2, unique genes and pathways differed between them, with CL153 showing more enriched GO terms and metabolic pathways than Icatu. Divergent functional categories and significantly enriched pathways were found in these genotypes, which altogether supports contrasting responses to eCO2. A considerable number of genes linked to coffee physiological and biochemical responses were found to be affected by eCO2 with the significant upregulation of photosynthetic, antioxidant, and lipidic genes. This supports the absence of photosynthesis down-regulation and, therefore, the maintenance of increased photosynthetic potential promoted by eCO2 in these coffee genotypes.

Ocean Acidification and Warming Lead to Increased Growth and Altered Chloroplast Morphology in the Thermo-Tolerant Alga Symbiochlorum hainanensis.

Ocean acidification and warming affect the growth and predominance of algae. However, the effects of ocean acidification and warming on the growth and gene transcription of thermo-tolerant algae are poorly understood. Here we determined the effects of elevated temperature (H) and acidification (A) on a recently discovered coral-associated thermo-tolerant alga Symbiochlorum hainanensis by culturing it under two temperature settings (26.0 and 32.0°C) crossed with two pH levels (8.16 and 7.81). The results showed that the growth of S. hainanensis was positively affected by H, A, and the combined treatment (AH). However, no superimposition effect of H and A on the growth of S. hainanensis was observed under AH. The analysis of chlorophyll fluorescence, pigment content, and subcellular morphology indicated that the chloroplast morphogenesis (enlargement) along with the increase of chlorophyll fluorescence and pigment content of S. hainanensis might be a universal mechanism for promoting the growth of S. hainanensis. Transcriptomic profiles revealed the effect of elevated temperature on the response of S. hainanensis to acidification involved in the down-regulation of photosynthesis- and carbohydrate metabolism-related genes but not the up-regulation of genes related to antioxidant and ubiquitination processes. Overall, this study firstly reports the growth, morphology, and molecular response of the thermo-tolerant alga S. hainanensis to future climate changes, suggesting the predominance of S. hainanensis in its associated corals and/or coral reefs in the future.

Complexity of Brassica oleracea-Alternaria brassicicola Susceptible Interaction Reveals Downregulation of Photosynthesis at Ultrastructural, Transcriptional, and Physiological Levels.

Black spot disease, caused by Alternaria brassicicola in Brassica species, is one of the most devastating diseases all over the world, especially since there is no known fully resistant Brassica cultivar. In this study, the visualization of black spot disease development on Brassica oleracea var. capitata f. alba (white cabbage) leaves and subsequent ultrastructural, molecular and physiological investigations were conducted. Inter- and intracellular hyphae growth within leaf tissues led to the loss of host cell integrity and various levels of organelle disintegration. Severe symptoms of chloroplast damage included the degeneration of chloroplast envelope and grana, and the loss of electron denseness by stroma at the advanced stage of infection. Transcriptional profiling of infected leaves revealed that photosynthesis was the most negatively regulated biological process. However, in infected leaves, chlorophyll and carotenoid content did not decrease until 48 hpi, and several chlorophyll a fluorescence parameters, such as photosystem II quantum yield (Fv/Fm), non-photochemical quenching (NPQ), or plant vitality parameter (Rdf) decreased significantly at 24 and 48 hpi compared to control leaves. Our results indicate that the initial stages of interaction between B. oleracea and A. brassicicola are not uniform within an inoculation site and show a complexity of host responses and fungal attempts to overcome host cell defense mechanisms. The downregulation of photosynthesis at the early stage of this susceptible interaction suggests that it may be a part of a host defense strategy, or, alternatively, that chloroplasts are targets for the unknown virulence factor(s) of A. brassicicola. However, the observed decrease of photosynthetic efficiency at the later stages of infection is a result of the fungus-induced necrotic lesion expansion.

The Molecular Priming of Defense Responses is Differently Regulated in Grapevine Genotypes Following Elicitor Application against Powdery Mildew.

Molecular changes associated with response to powdery mildew (PM) caused by Erysiphe necator have been largely explored in Vitis vinifera cultivars, but little is known on transcriptional and metabolic modifications following application of resistance elicitors against this disease. In this study, the whole transcriptome sequencing, and hormone and metabolite analyses were combined to dissect long-term defense mechanisms induced by molecular reprogramming events in PM-infected ‘Moscato’ and ‘Nebbiolo’ leaves treated with three resistance inducers: acibenzolar-S-methyl, potassium phosphonate, and laminarin. Although all compounds were effective in counteracting the disease, acibenzolar-S-methyl caused the most intense transcriptional modifications in both cultivars. These involved a strong down-regulation of photosynthesis and energy metabolism and changes in carbohydrate accumulation and partitioning that most likely shifted the plant growth-defense trade-off towards the establishment of disease resistance processes. It was also shown that genotype-associated metabolic signals significantly affected the cultivar defense machinery. Indeed, ‘Nebbiolo’ and ‘Moscato’ built up different defense strategies, often enhanced by the application of a specific elicitor, which resulted in either reinforcement of early defense mechanisms (e.g., epicuticular wax deposition and overexpression of pathogenesis-related genes in ‘Nebbiolo’), or accumulation of endogenous hormones and antimicrobial compounds (e.g., high content of abscisic acid, jasmonic acid, and viniferin in ‘Moscato’).

Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis

BackgroundCommon bacterial blight (CBB) caused by Xanthomonas phaseoli pv. phaseoli and Xanthomonas citri pv. fuscans is one of the major threats to common bean crops (Phaseolus vulgaris L.). Resistance to CBB is particularly complex as 26 quantitative resistance loci to CBB have been described so far. To date, transcriptomic studies after CBB infection have been very scarce and the molecular mechanisms underlying susceptibility or resistance are largely unknown.ResultsWe sequenced and annotated the genomes of two common bean genotypes being either resistant (BAT93) or susceptible (JaloEEP558) to CBB. Reciprocal BLASTp analysis led to a list of 20,787 homologs between these genotypes and the common bean reference genome (G19833), which provides a solid dataset for further comparative analyses. RNA-Seq after inoculation with X. phaseoli pv. phaseoli showed that the susceptible genotype initiated a more intense and diverse biological response than the resistant genotype. Resistance was linked to upregulation of the salicylic acid pathway and downregulation of photosynthesis and sugar metabolism, while susceptibility was linked to downregulation of resistance genes and upregulation of the ethylene pathway and of genes involved in cell wall modification.ConclusionsThis study helps better understanding the mechanisms occurring during the early colonization phase of common bean by Xanthomonas and unveils new actors potentially important for resistance and susceptibility to CBB. We discuss the potential link between the pathways induced during bean colonization and genes induced by transcription activator-like effectors (TALEs), as illustrated in other Xanthomonas pathovars.