Abstract: In this work, we study the dissipative dynamics of a double-well Bose-Einstein condensate (BEC) out-coupled to reservoir at each side of its trap. The sub-system comprises of a simple Bose-Hubbard model, where the interplay of atom-tunneling current and inter-particle interaction are the main quantum features. The contact with two separate heat baths causes dissipation and drives the system into a non-equilibrium state. The system is well described by the Generalized Quantum Heisenberg-Langevin equation. We considered two Markovian dissipative BEC systems based on (i) the mean-field model (MF), where the internal noise has been averaged out and (ii) the noise-correlated model (FDT). Physical quantities, such as population imbalance, coherence and entanglement of the system, are computed for the models. The two-mode BEC phases, such as the quantum tunneling state and the macroscopic quantum-trapping state, evolved into complicated dynamics by controlling the non-linear interaction and dissipation strengths. We found that many important quantum features produced by the noise-correlated FDT model are not captured by the mean-field model. Keywords: Double-well BEC, Dissipation, Noise, Markovian, Non-Markovian, Fixed points. PACS: 03.75 Lm, 03.65 Yz, 03.75 Gg, 05.