Understanding how farming practices affect soil organic carbon (SOC) accumulation is essential for sustainable agriculture. Agronomic decisions, such as crop sequence, significantly influence various soil properties. However, the overall benefits of crop rotation on soil structure and SOC storage remain uncertain. We compared the effects of soybean (Glycine max L.) monocropping with a three-year crop rotation comprising wheat (Triticum aestivum L.)/soybean double crop, maize (Zea mays L.), and soybean on the vertical distribution of SOC up to one metre depth. Additionally, we examined carbon accumulation as particulate organic matter-carbon (POM-C), soil aggregation, and structural stability in the topsoil. Compared to monocropping, crop rotation increased SOC concentrations (19 vs. 16 gC kg soil⁻¹), stock (12 vs. 10.7 MgC ha⁻¹), and POM-C content (6 vs. 3.2 gC kg soil⁻¹) in the first 5 cm of soil. At 20–65 cm depth, rotation showed a marginal increment of SOC stock with respect to soybean monocropping. The increased surface SOC content in the rotation positively affected the POM-C content and macro-aggregation. However, soil structural stability showed a tendency to be higher in the monocropping, especially at a depth of 5–20 cm. Overall, crop rotation demonstrated potential for enhanced carbon sequestration in temperate agroecosystems within three years, despite not significantly improving soil structural stability.
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