The large-scale distribution of thaliaceans in relation to environmental variables was investigated over 4500 km in the transition region of the North Pacific (36°N–43.6° N, 141.5° E–164.5° W) in the summer of 2016–2019. Three main patterns occurred in the thaliacean bloom formations with specific and annual variabilities. Thalia democratica, the most dominant thaliacean species in this region, formed an intensive bloom (>100 ind m−3) of up to 300 km, mainly south of the subarctic boundary between 160° E and 180°. The bloom was accompanied by a dense water mass which was associated with high nutrient concentration and N/P ratio, indicating that this species thrived under the influence of the HNLC water mass from the subarctic region. A Dolioletta gegenbauri bloom was observed east of 180° and the north of the subarctic boundary in association with higher chlorophyll a levels. Doliolum denticulatum and Doliolum nationalis increased with sea surface temperature and pico-sized chlorophyll a, suggesting adaptation to oligotrophic subtropical waters. Estimated grazing and downward flux by Thalia democratica bloom corresponded to 63–80% and 20–26% of daily primary production, respectively, indicating that the bloom enhanced the biological pump in the HNLC-like environment dominated by small phytoplankton. Doliolids function as important components of the microbial food web through the consumption of varied organic matter. Thaliaceans utilise the specific niche which suspension-feeding copepods find difficult to colonise, indicating that bottom-up control of oceanographic conditions determines the mesozooplankton community and food-web structure in the transition region.