Soil Diversity Research Articles

Application of multi-species microbial bioassay for toxicity risk assessment LumiMARA luminometric tests and chemical analyses to assess water quality in the świętokrzyskie voivodeship

The area of Świętokrzyskie voivodeship is located within the range of several macro-regions, the parent rocks are highly differentiated, which affects the diversity of soil and water conditions. and water conditions. The weakest soils occur in the central and northern parts, the best soils in the eastern and southern parts of the Świętokrzyskie Voivodeship. The study presents selected physicochemical properties of groundwaters captured by borehole wells and spring waters in selected areas of the and spring waters in selected areas of the swietokrzyskie voivodeship. The analysed water was subjected to toxicity analysis using multispecies LumiMARA test (Microbial Assay for Risc Assessment) and physicochemical parameters were determined - pH, carbonate hardness and total hardness, conductivity, OWO and chlorides. The water samples for the study were collected at different times of the year 2021- January, April, July, November. The conductivity of the tested waters, regardless of the source of origin, varies by location. The aim of the study was to analyze the quality of water due to ground and water conditions and very high interest and use of water from the studied sources by the inhabitants of the regions. The study showed that the analysed waters contained toxic substances in concentrations exceeding the WHO recommendations. Chemical analyses were reflected in ecotoxicological analyses, which showed toxic effects on individual bacterial strains and allowed the waters to be classified into individual toxicity classes.

Prediction of soil seed bank of piedmont and alluvial environments of Dera Ghazi Khan, Punjab, Pakistan.

The current focus is on the overall pattern of seed storage present in the fragments of the soil of piedmont and alluvial landscapes of the environment. The present study predicted the seed banks of both soils of alluvial and piedmont zones in different ecological conditions and evaluate the potential of seeds in the restoration of both environments. The composition of the seed bank of soil is mainly affected by the alluvial environment and the structure of cleared area shows that more species of germinating annual grasses and growable seeds with the higher total number. Extant vegetation structures have an important role in the diversity of soil seed reservoirs, whose composition corresponded with the openness of the site. When in situ soil seed bank is recruited, it helps to restore only some components of the plant community in an alluvial environment. In our current research, it was confirmed that seed richness was higher in number at lower elevation (alluvial) than that at high elevation (piedmont). Seed richness showed a significant negative correlation with anions, cations, while significantly positive with altitude that suggests the richness pattern of the overall seed bank of the area is influenced by various environmental factors.

Influences of phosphorus-modified biochar on bacterial community and diversity in rhizosphere soil.

Root-associated bacteria play a vital role in the soil ecosystem and plant productivity. Previous studies have reported the decline of bacterial community and rhizosphere soil quality in the cultivation of some medicinal plants (i.e., Pseudostellaria heterophylla). Phosphorus (P)-modified biochar has the potential to improve soil health and quality. However, its influence on the bacterial community and diversity in the rhizosphere of medicinal plants is not well understood. Therefore, this study aims to investigate the effects of P-modified biochar on the bacterial community and diversity in the rhizosphere of P. heterophylla. Soil samples were collected from the rhizosphere of 4-month P. heterophylla under control (no biochar), 3% unmodified and 3% P-modified biochar treatments, respectively. Compared with control and unmodified biochar treatment, P-modified biochar significantly increased the relative abundance of plant-beneficial bacteria (P < 0.05), particularly Firmicutes, Nitrospirae and Acidobacteria. The relative abundance of Bacillus, belonging to Firmicutes, was dramatically raised from 0.032% in control group to 1.723% in P-modified biochar-treated group (P < 0.05). These results indicate the potential enhancement of soil quality for the growth of medicinal plants. The application of biochar significantly increased bacterial richness and bacterial diversity (P < 0.05). P modification of biochar did not have significant effects on soil bacterial richness (P > 0.05), while it reduced Shannon and increased Simpson diversity index of soil bacterial communities significantly (P < 0.05). It indicates a decrease in bacterial diversity. This research provides a new perspective for understanding the role of P-modified biochar in the rhizosphere ecosystem.

Molecular insight into the vertical migration and degradation of dissolved organic matter in riparian soil profiles

Due to the molecular complexity of dissolving organic matter (DOM), the vertical molecular distribution of riparian soil DOM (especially dissolved organic nitrogen (DON) and dissolved organic phosphorus (DOP)) in different land use types and their relationship with the bacterial community is still unclear. This study analyzed the spectral characteristics of riparian soil DOM from 0 to 100 cm in wild grassland, agricultural land, and bare land. The molecular distribution of DOM was revealed through Fourier-transform ion cyclotron resonance mass spectrometry (FT-ICR MS) and the specific relationship between DOM and bacterial community composition (BCC) was evaluated. The results showed that the DOM in the upper soil layer (0–40 cm) was mainly composed of recalcitrant macromolecular organics, while that in the lower layer (40–100 cm) was labile small molecular organics. In agricultural land, the total storage of DOM was lower than that in wild grassland, but with a higher abundance of recalcitrant organic carbon (lignin, etc.). At the same time, the bacterial community in agricultural land is shifting towards copiotrophs. In addition, the abundance of labile C degrading genes increases with nitrate as the main electron acceptor. However, sulfates are mainly used as electron acceptors in wild grasslands. Both DOP and DON were dominated by lignin and displayed higher chemical diversity in the upper soil. The bioavailability of DOP in three types of soil is higher than that of DON. DOM-BCC network analysis shows that the recalcitrant DON and DOP molecules in soil are positively correlated with phylum Actinobacteriota in agricultural land. These results emphasize that the DOM molecular characteristics were closely related to the function of the soil bacterial community.

Different Responses of Arbuscular Mycorrhizal Fungal Community Compositions in the Soil and Roots to Nitrogen Deposition in a Subtropical Cunninghamia lanceolata Plantation in China

Elevated nitrogen (N) deposition may stimulate a plant’s dependency on arbuscular mycorrhizal (AM) fungi in phosphorus (P)-deficient subtropical forests. However, the ecological assembly processes and the responses of AM fungal diversity and community structure to N deposition in both the roots and rhizosphere are still unclear. We collected root and soil samples from a Cunninghamia lanceolata plantation forest after four years of N addition and examined the community structure and assembly of AM fungi. Elevated N deposition decreased the AM fungal community diversity in both rhizosphere soil and roots. Glomeraceae was the dominant family of the AM fungal community in both soil and roots across all N addition treatments, followed by Gigasporaceae and Ambisporaceae. However, N addition induced differential variation in the community composition of AM fungi between soil and roots. For soil AM fungi, N addition decreased the Glomeraceae abundance and increased the Gigasporaceae and Ambisporaceae abundance. In contrast, the root AM fungal community was dominated by Glomeraceae under N addition treatments. Furthermore, N addition increased the deterministic community assembly that acted as an environmental filter for soil AM fungi. In contrast, N addition decreased the importance of determinism, implying that the selection of plants on root AM fungi decreased with increasing N addition. Altogether, our findings suggest that the community structure of AM fungi responds differently to N deposition in the soil and roots in subtropical forests and highlight the important role of soil AM fungi in helping host plants respond to N deposition.

Comparative insights of soil properties of termite hill in relation to the microbial community using culture-independent approach

The unique variety of soil enzymes found in termite mound soil results in different physico-chemical properties than the surrounding field soil. Metagenomic research of termite mound soil samples has paved a critical path in our comprehension of the ecosystem's diverse bacterial species. Despite advanced soil research, basic analytical tests on termite mound soil have not been considered. In the present study, microbial diversity of the two-termite mound soil was studied using Illumina Miseq sequencing by targeting V3-V4 regions in 16S rRNA. In termite mound soil (TMS) and adjacent field soil (AFS), the maximum bulk density, particle density, and porosity were 1.82 mg m−3, 3.33 mg m−3, 65 % and 1.25 mg m−3, 2.5 mg m−3, 50 %, respectively. The available NPK status in termite mound soil was higher than in surrounding field soil. The most abundant phylum in both samples was Proteobacteria, with abundances of 22.83 % and 32.76 % for samples R1 and R2, respectively. A noteworthy finding is that a small portion of the relative abundance is classified in the Kingdom Archaea identified upto species level of taxonomic classification.

Soil organic matter and biogenic-abiogenic interactions in soils of Larsemann Hills and Bunger Hills, East Antarctica

Although Antarctic soils are usually described as weakly developed, recent studies indicated the significant variability in soil forming conditions across the sixth continent as well as considerable diversity of soils. The identification of pedogenetic processes in Antarctica is crucial for understanding not only the current state of its environment, but also for better understanding of soil development on Earth through time. Our study provides a detailed investigation of micromorphological features and molecular composition of organic matter of soil and soil-like bodies of remote areas of East Antarctica - Larsemann Hills and Bunger Hills, which are characterized by harsh environmental conditions. Studied soils showed predominantly coarse structure and low organic carbon content, alkaline to almost neutral pH range. Thin sections of studied soils were characterized by predominance of grains of quartz, feldspars, and other primary minerals with angular shapes indicating relatively weak degree of their alteration. All studied humic substances are characterized by the predominance of aliphatic structures. Moreover, it was observed that studied humic acids contains significant amounts of carbohydrates, polysaccharides, esters and amino acids and hydrophilic fragments predominate. Organo-mineral interactions were mostly connected with development of biofilms in the topsoil horizons with the maximal biological activity among studied soils.

Changes in Soil Chemical Properties and Rhizosphere Bacterial Community Induced by Soil Amendments Associated with Reduction in Cadmium Accumulation by Rice

Soil amendments have been extensively employed for the purpose of remediating soils contaminated with cadmium (Cd). However, the potential impacts of soil amendments on soil chemical properties, soil Cd bioavailability, total Cd accumulation by rice, and rhizosphere bacterial community in Cd-contaminated paddy fields located in a tropical region is still at its infancy. In this study, a commercial MgO-CaO-SiO2 conditioner (A), biochar (B), and a combination of the commercial MgO-CaO-SiO2 conditioner and biochar with a ratio of 1:1 (C) were applied at two different doses [2250 kg ha−1 (A150, B150, C150), 4500 kg ha−1 (A300, B300, C300)] to investigate their impacts on soil Cd stabilization and total Cd uptake of rice straw and grain in a Cd-contaminated remediation field experiment. Rhizosphere bacterial community diversity and composition were also assessed using high-throughput sequencing based on 16S rRNA genes. Compared with non-amendment treatment (CK), soil pH, cation exchange capacity (CEC), organic matter (OM), total nitrogen (TN), available nitrogen (AN), and nitrate (NO3−) concentrations were significantly elevated, whereas ammonium (NH4+) and soil available Cd concentrations were reduced by soil amendment treatments. Meanwhile, soil amendments significantly decreased concentrations of total Cd in both rice straw and grain, with the lowest Cd concentration in the C300 treatment. Soil pH and CEC were significantly and negatively associated with soil Cd availability and rice straw and grain Cd concentrations, while NH4+ concentration was positively correlated with soil available Cd concentration, and OM, TN, and NO3− concentrations were positively linked with rice grain Cd concentration. Soil amendments significantly increased bacterial Chao 1 and Shannon indexes and altered bacterial community composition in rhizosphere soil, due to changes in the composition of the community primarily influenced by variations in soil pH, CEC, and soil available Cd, NH4+, available phosphorous (AP) and available Potassium (AK) concentrations. Furthermore, the abundant bacterial species (Pseudomonas) and rare bacterial species (Bacillus, Candidatus_Solibacter and Streptomyces) have been up-regulated by different soil amendments, which might be in favour of soil Cd immobilization. A structural equation model also showed that soil amendments could improve bacterial diversity and change soil pH and CEC, which were conducive to hindering the removal and conversion of Cd. Overall, these results indicate that biochar-(MgO-CaO-SiO2) mixed amendments at high dosage exerted better performance compared with single application soil amendment A and B. The changes in soil chemical properties, available Cd content, and rhizosphere bacterial community assembly induced by soil amendments are closely correlated with the decrease in rice’s ability to accumulate Cd.

Effect of experimental warming on dissolved organic matter and bacterial diversity in a forest swamp soil

Forest swamp ecosystems play an important role in the global carbon cycle, yet they are often overlooked. With global climate warming, it is inevitable that it will impact the relationship between soil microorganisms and organic matter. Dissolved organic matter (DOM) in the soil environment is extremely sensitive to environmental changes. Understanding the effects of climate change on DOM and microorganisms is crucial for assessing the stability of carbon (C) in forest swamp soils. Therefore, we conducted a 142-day laboratory warming incubation experiment (control: 10 °C, and warming: 20 °C) to investigate the response of forest swamp soil microbial and DOM properties to warming. Excitation-emission matrix (EEM) fluorescence spectroscopy was used to explore the changes in different material compositions of DOM over time at different incubation temperatures, and high-throughput sequencing was used to investigate the changes in soil bacteria. The DOM content (dissolved organic C, DOC) and the degree of humification index (HIX) increased with an increase in incubation time under warming conditions (p < 0.05). In contrast, microbial humic substances (C3) decreased with increasing time. Long-term warming has separated bacterial communities and gradually tightened the degree of connectivity between bacterial networks. The degree of soil humification (Mantel test r = 0.58, p < 0.01) and DOC (r = 0.21, p < 0.05) were the most critical indicators that changed the diversity of the bacterial community. Our findings suggest a degree of interaction between changes in forest swamp soil microbial communities and DOM under warming conditions. The results of this study contribute to our understanding of changes in DOM fluorescence indices in forest swamp soils under the influence of climate change and their associated microbial mechanisms.

Community Structure and Diversity of Rhizosphere Soil and Endophytic Bacteria during the Period of Growth of Moso Bamboo Shoots.

The purpose of this study was to elucidate the community structure of rhizosphere soil bacteria and endophytic bacteria during the growth of moso bamboo (Phyllostachys edulis) shoots. This study collected the rhizospheric soil samples, tissue samples of rhizome roots, shoot buds, winter bamboo shoots, spring bamboo shoots, and samples of forest soil. Their metagenomic DNA was extracted, and the bacterial community structure and diversity characteristics were compared and analyzed using high-throughput sequencing technology. These samples enabled the identification of 32 phyla, 52 classes, 121 orders, 251 families, and 593 genera of bacteria. The phyla primarily included Proteobacteria, Acidobacteria, and Cyanobacteria among others. Proteobacteria was the dominant phylum in the samples of bamboo shoots and rhizome roots, whereas Acidobacteria was dominant in the rhizosphere and forest soil samples. The predominant genera of the rhizome root samples were Acidothermus, Bradyrhizobium and Acidobacterium, and the predominant genera of the soil samples were Acidothermus and Acidobacterium. This study preliminarily revealed the regularity between the growth and development of bamboo shoots and the changes in the community structure of rhizosphere soil and endophytic bacteria, which provides insights into the relationship between growth and the bacterial community structure in different stages of bamboo shoots.

Functional diversity and carbon storage of plant community elevation patterns and carbon accumulation mechanisms in desert shrubland of Yanqi Hola Mountain, China

Exploring the distribution characteristics of plant community functional diversity, functional traits and plant and soil carbon stocks along elevation and the effects of functional diversity and functional traits on carbon stocks is of great significance for revealing the distribution characteristics of plant community functional diversity and carbon stocks in the desert area and understanding the carbon accumulation mechanism. In this study, we took the leaf functional traits of plant community species and the carbon stocks of plants and soils of sample plots in the pre-Hola Mountain desert area as the research objects and explored their altitudinal distribution characteristics and their interrelationships. The results showed that (1) the plant carbon storage capacity of the shrub - herb association was the strongest, and the soil carbon storage capacity of the herb association was the strongest. (2) Functional richness and plant carbon storage capacity tended to increase and then decrease with elevation, while functional evenness and leaf phosphorus content tended to decrease and then increase with elevation. Functional dispersion, leaf water content, chlorophyll content, leaf carbon, nitrogen content, and soil carbon stock all showed a gradual increase with elevation, and the total carbon stock gradually increased with elevation in the middle and low elevation areas (1200–1800 m), and showed a wave-like change in the high elevation areas (1800–2400 m). (3) The accumulation of soil carbon stocks in the study area is mainly dominated by the “mass ratio hypothesis”, while the accumulation of plant carbon stocks is mainly dominated by the “ecological niche complementarity hypothesis”, and plant and soil carbon stocks are mainly affected by the specific leaf area and the content of carbon, nitrogen, and phosphorus in leaves.

Microbial diversity in soils suppressive to Fusarium diseases.

Fusarium species are cosmopolitan soil phytopathogens from the division Ascomycota, which produce mycotoxins and cause significant economic losses of crop plants. However, soils suppressive to Fusarium diseases are known to occur, and recent knowledge on microbial diversity in these soils has shed new lights on phytoprotection effects. In this review, we synthesize current knowledge on soils suppressive to Fusarium diseases and the role of their rhizosphere microbiota in phytoprotection. This is an important issue, as disease does not develop significantly in suppressive soils even though pathogenic Fusarium and susceptible host plant are present, and weather conditions are suitable for disease. Soils suppressive to Fusarium diseases are documented in different regions of the world. They contain biocontrol microorganisms, which act by inducing plants' resistance to the pathogen, competing with or inhibiting the pathogen, or parasitizing the pathogen. In particular, some of the Bacillus, Pseudomonas, Paenibacillus and Streptomyces species are involved in plant protection from Fusarium diseases. Besides specific bacterial populations involved in disease suppression, next-generation sequencing and ecological networks have largely contributed to the understanding of microbial communities in soils suppressive or not to Fusarium diseases, revealing different microbial community patterns and differences for a notable number of taxa, according to the Fusarium pathosystem, the host plant and the origin of the soil. Agricultural practices can significantly influence soil suppressiveness to Fusarium diseases by influencing soil microbiota ecology. Research on microbial modes of action and diversity in suppressive soils should help guide the development of effective farming practices for Fusarium disease management in sustainable agriculture.

Metagenomic analysis reveals the microbial response to petroleum contamination in oilfield soils

The response of the microbes to total petroleum hydrocarbons (TPHs) in three types of oilfield soils was researched using metagenomic analysis. The ranges of TPH concentrations in the grassland, abandoned well, working well soils were 1.16 × 102–3.50 × 102 mg/kg, 1.14 × 103–1.62 × 104 mg/kg, and 5.57 × 103–3.33 × 104 mg/kg, respectively. The highest concentration of n-alkanes and 16 PAHs were found in the working well soil of Shengli (SL) oilfield compared with those in Nanyang (NY) and Yanchang (YC) oilfields. The abandoned well soils showed a greater extent of petroleum biodegradation than the grassland and working well soils. Α-diversity indexes based on metagenomic taxonomy showed higher microbial diversity in grassland soils, whereas petroleum-degrading microbes Actinobacteria and Proteobacteria were more abundant in working and abandoned well soils. RDA demonstrated that low moisture content (MOI) in YC oilfield inhibited the accumulation of the petroleum-degrading microbes. Synergistic networks of functional genes and Spearman's correlation analysis showed that heavy petroleum contamination (over 2.10 × 104 mg/kg) negatively correlated with the abundance of the nitrogen fixation genes nifHK, however, in grassland soils, low petroleum content facilitated the accumulation of nitrogen fixation genes. A positive correlation was observed between the abundance of petroleum-degrading genes and denitrification genes (bphAa vs. nirD, todC vs. nirS, and nahB vs. nosZ), whereas a negative correlation was observed between alkB (alkane- degrading genes) and amo (ammonia oxidation), hao (nitrification). The ecotoxicity of petroleum contamination, coupled with petroleum hydrocarbons (PH) degradation competing with nitrifiers for ammonia inhibited ammonia oxidation and nitrification, whereas PH metabolism promoted the denitrification process. Moreover, positive correlations were observed between the abundance of amo gene and MOI, as well as between the abundance of the dissimilatory nitrate reduction gene nirA and clay content. Thus, improving the soil physicochemical properties is a promising approach for decreasing nitrogen loss and alleviating petroleum contamination in oilfield soils.

Arbuscular mycorrhizal colonization of Scleria sumatrensis as a member of Cyperaceae family commonly known as non-mycorrhizal host plant

Cyperaceae is not strictly a non-mycorrhizal host plant family, and the mycorrhizal status of its member could be influenced by environmental conditions. Scleria sumatrensis, a member of Cyperaceae grown natively as a pioneer plant in a disturbed area, could be used as a source of native arbuscular mycorrhizal fungal (AMF) inoculum. Thus, this study aimed to analyze the mycorrhizal status of the S. sumatrensis grown natively in Martabe, North Sumatra, Indonesia, for revegetation purposes. The analysis was carried out by measuring root colonization characteristics and spore diversity in the rhizosphere soils of the S. sumatrensis. The roots were stained and measured for AM colonization characteristics. While the AMF spores were obtained using the wet sieving and decanting method and were identified based on morphological characteristics. The results indicated that the roots of S. sumatrensis were colonized by AMF in good-quality formed entry points, internal hyphae, arbuscules, and vesicles. The AMF associated with S. sumatrensis identified were relatively diverse; consisted of Acaulospora sp., Acaulospora cf. mellea, Glomus sp. 1, Glomus sp. 2, Glomus sp. 3, and Glomus sp. 4. This is the first report showing that S. sumatrensis is a mycotrophic plant in the family of Cyperaceae.

Assessing the structure and diversity of fungal community in plant soil under different climatic and vegetation conditions

IntroductionUnderstanding microbial communities in diverse ecosystems is crucial for unraveling the intricate relationships among microorganisms, their environment, and ecosystem processes. In this study, we investigated differences in the fungal community structure and diversity in soils from two contrasting climatic and vegetation conditions: the Xinjiang western China plateau and the Fujian southeastern coastal province.MethodsA total of 36 soil samples collected from two climatic regions were subjected to high-throughput ITS gene sequencing for fungal community analysis. In conjunction soil physicochemical properties were assessed and compared. Analyses included an examination of the relationship of fungal community structure to environmental factors and functional profiling of the community structure was using the FUNGuild pipeline.ResultsOur data revealed rich fungal diversity, with a total of 11 fungal phyla, 31 classes, 86 orders, 200 families, 388 genera, and 515 species identified in the soil samples. Distinct variations in the physicochemical properties of the soil and fungal community structure were seen in relation to climate and surface vegetation. Notably, despite a colder climate, the rhizosphere soil of Xinjiang exhibited higher fungal (α-)diversity compared to the rhizosphere soil of Fujian. β-diversity analyses indicated that soil heterogeneity and differences in fungal community structure were primarily influenced by spatial distance limitations and vegetation type. Furthermore, we identified dominant fungal phyla with significant roles in energy cycling and organic matter degradation, including members of the Sordariomycetes, Leotiomycetes, Archaeosporomycetes, and Agaricomycetes. Functional analyses of soil fungal communities highlighted distinct microbial ecological functions in Xinjiang and Fujian soils. Xinjiang soil was characterized by a focus on wood and plant saprotrophy, and endophytes, whereas in Fujian soil the fungal community was mainly associated with ectomycorrhizal interactions, fungal parasitism, and wood saprotrophy.DiscussionOur findings suggest fungal communities in different climatic conditions adapt along distinct patterns with, plants to cope with environmental stress and contribute significantly to energy metabolism and material cycling within soil-plant systems. This study provides valuable insights into the ecological diversity of fungal communities driven by geological and environmental factors.

Afforestation increases microbial diversity in low-carbon soils

Afforestation increases microbial diversity in low-carbon soils

Bacterial Diversity and Occurrences in Cassava Effluent-Contaminated Soil Collected From Ozubulu, Anambra State, Nigeria

Environmental degradation due to indiscriminate disposal of refuse has a tremendous effect on microbial activities in the soil. Most soil in Nigeria has been subjected to different kinds of pollutants resulting from anthropogenic activities which have become a major threatening factor to the quality of soil. This study was undertaken to evaluate bacterial diversity and occurrences in cassava effluent contaminated soil from Ozubulu, Anambra State. A total of 30 composite soil samples were aseptically collected from cassava effluent disposal site using a sterile soil auger. The predominant bacterial isolates that aided nutrients cycling were appropriately characterized, and their diversities in both impacted and non-impacted soil samples were enumerated. Furthermore, the bacterial isolates were characterized based on morphology, microscopy, and biochemical characteristics. There was a significant reduction in the occurrences of the bacterial isolates in the impacted soil, and Gram negative rods such as Pseudomonas, Klebsiella and Micrococcus (Gram positive) species were the bacterial isolates. The study has revealed that cassava effluent affects microbial distribution in the soil. Keywords: Bacterial, Diversity, Occurrences, Cassava, Effluent-Contaminated and Soil

The application of entomopathogenic nematode modified microbial communities within nesting mounds of the red imported fire ants, Solenopsis invicta

Entomopathogenic microorganisms (e.g., fungi, bacteria, nematodes) have been widely used in biological control of soil-dwelling pests, including the red imported fire ant (RIFA), Solenopsis invicta, a notorious invasive pest worldwide. The application of large amounts of entomopathogenic microorganisms to soil may affect the indigenous soil microbial communities. However, reports about the effect of entomopathogenic nematodes (EPN) on soil microbial communities are very few. In this study, the effects of EPN on RIFA populations and microbial communities in mounds were investigated. Our results showed that the application of the EPN Steinernema carpocapsae. All strain on mounds efficaciously suppressed RIFA worker populations, without forming significantly more satellite mounds compared with the control treatment. The application of EPN did not impact the bacterial and fungal diversity in soils derived from the RIFA mounds. However, it slightly altered the taxonomic make-up of the bacterial communities, but significantly altered the taxonomic composition of fungal communities at the phylum, family, and genus levels. The abundances of some beneficial bacteria and fungi, such as Streptomyces, decreased, while those of plant and animal pathogenic bacteria and fungi, dramatically increased, after EPN treatment. On the other hand, the abundances of some entomopathogenic fungi, such as Fusicolla, Clonostachys, and Mortierella, increased. Redundancy analysis or canonical correspondence analysis revealed a positive correlation between the efficacious EPN control and the presence of the insect-resistant bacteria, Sinomonas, as well as entomopathogenic fungi Fusicolla and Mortierella. This suggests that the interactions between EPN and entomopathogenic fungi may play a role in the biological control of RIFA. Our discoveries shed light on the interactions among EPN, RIFA, and soil microbial communities, and emphasize a possible mutualistic relationship between EPN and entomopathogenic fungi in the biological control of RIFA.

Microbial organic fertilizer prepared by co-composting of Trichoderma dregs mitigates dissemination of resistance, virulence genes, and bacterial pathogens in soil and rhizosphere

The use of manure, mycelium dregs and other waste as organic fertilizer is the main source of antibiotic resistance genes (ARGs) and pathogens in farmland. Composting of waste may effectively remove ARGs and pathogens. However, the profiles and drivers of changes in metal resistance genes (MRGs), biocide resistance genes (BRGs), and virulence genes (VGs) in soil-crop rhizosphere systems after compost application remain largely unknown. Here, we prepared two kinds of microbial organic fertilizers (MOF) by using Trichoderma dregs (TDs) and organic fertilizer mixing method (MOF1) and TDs co-composting method (MOF2). The effects of different types and doses of MOF on resistance genes, VGs and pathogens in soil-rhizosphere system and their potential mechanisms were studied. The results showed that co-composting of TDs promoted the decomposition of organic carbon and decreased the absolute abundance of ARGs and mobile genetic elements (MGEs) by 53.4–65.0%. MOF1 application significantly increased the abundance and diversity of soil ARGs, BRGs, and VGs, while low and medium doses of MOF2 significantly decreased their abundance and diversity in soil and rhizosphere. Patterns of positive co-occurrence between MGEs and VGs/MRGs/BRGs/ARGs were observed through statistical analysis and gene arrangements. ARGs/MRGs reductions in MOF2 soil were directly driven by weakened horizontal gene transfer triggered by MGEs. Furthermore, MOF2 reduced soil BRGs/VGs levels by shifting bacterial communities (e.g., reduced bacterial host) or improving soil property. Our study provided new insights into the rational use of waste to minimize the spread of resistomes and VGs in soil.

Effects of molybdenum supply on microbial diversity and mineral nutrient availability in the rhizosphere soil of broad bean (Vicia Faba L.)

Molybdenum application holds the potential to enhance agricultural productivity. However, the precise impact on soil microbial diversity and mineral nutrient availability remains uncertain. In this study, we collected rhizosphere soil samples from different growth stages of broad beans. By analyzing mineral element contents, soil phosphorus and zinc fractions, as well as fungal and bacterial diversity, we observed that Mo application resulted in a reduction of soil Citrate‒P and HCl‒P content. This reduction led to an increase in available P content at different stages. Moreover, Mo application elevated root P concentration, but concurrently impeded the translocation of P to the shoots. Mo application also decreased the soil Exc‒Zn (exchangeable Zn) content while increasing the Res‒Zn (residual Zn) content, ultimately causing a decrease in available Zn content at different stages. Consequently, the Zn concentration within broad beans correspondingly decreased. Mo application fostered an augmentation in fungal richness and Shannon indices at the branching and podding stages. The analysis of microbial co-occurrence networks indicated that Mo application bolstered positive connectivity among fungal taxa. Remarkably, Mo significantly increased the abundance of Chaetomium, Leucosporidium, and Thielavia fungi. Spearman correlation analysis demonstrated a significant positive correlation between fungal diversity and soil available P content, as well as a notable negative correlation with soil available Zn content. These findings suggest that Mo application may modify the availability of soil P and Zn by influencing fungal diversity in the rhizosphere of crop soil, ultimately impacting nutrient accumulation within the grains.