Timing Of Diversification Research Articles

Comparative phylogeography of four lizard taxa within an oceanic island.

Comparative phylogeography aims to detect common patterns of differentiation among taxa attributed to the same geological or environmental barriers and, thus, find shared drivers of genomic splits and landscape features that explain patterns of occurrence and genetic diversity. Following this approach, this work focuses on four endemic lizard taxa, namely Acanthodactylus schreiberi schreiberi, Ophisops elegans schlueteri, Phoenicolacerta troodica, and Laudakia cypriaca, that co-occur in Cyprus, an isolated island of the Mediterranean. In an attempt to discern possible effects of the geological and ecological history of the region on diversity patterns along the lineages under study, samples were collected from all parts of Cyprus and phylogenetic reconstructions, species delimitation analyses, and biogeographic comparisons were conducted at both genetic and genomic levels (Sanger and ddRAD sequencing data, respectively) for all four taxa. The derived phylogenomic relationships provide evidence of a strong genetic structure within the island that agrees with the geographical origins of each population. A rare case of an island-to-mainland dispersal event is confirmed for one of the focal taxa, making it one of the few documented cases of this type. Estimated diversification times during the Miocene reflect the timing of the first arrival on the island, while further diversification seems to have been strongly affected by the Pleistocene oscillations.

Rapid radiation of a plant lineage sheds light on the assembly of dry valley biomes.

Southwest China is characterized by high plateaus, large mountain systems, and deeply incised dry valleys formed by major rivers and their tributaries. Despite the considerable attention given to alpine plant radiations in this region, the timing and mode of diversification of the numerous dry valley plant lineages remain unknown. To address this knowledge gap, we investigated the macroevolution of Isodon (Lamiaceae), a lineage commonly distributed in the dry valleys in southwest China and wetter areas of Asia and Africa. We reconstructed a robust phylogeny encompassing nearly 90% of the approximately 140 extant Isodon species using transcriptome and genome-resequencing data. Our results suggest a rapid radiation of Isodon during the Pliocene that coincided with a habit shift from herbs to shrubs and a habitat shift from humid areas to dry valleys. The shrubby growth form likely acted as a preadaptation allowing for the movement of Isodon species into these dry valleys. Ecological analyses highlight drought-related factors as key drivers influencing the niche preferences of different growth forms and species richness of Isodon. The interplay between topography and the development of the East Asian monsoon since the middle Miocene likely contributed to the formation of the dry valley biome in southwest China. This study enhances our understanding of evolutionary dynamics and ecological drivers shaping the distinctive flora of southwest China and reveals the strategies employed by montane plants in response to climate change and dryland expansion, thus facilitating conservation efforts globally.

The Contemporary Distribution of Scincine Lizards Does Not Reflect Their Biogeographic Origin

ABSTRACTAimWe assess the systematic relationships and historical biogeographic patterns in the subfamily Scincinae, a group of lizards that primarily inhabits the Afro‐Madagascan and Saharo‐Arabian regions with isolated lineages in Europe, North America, East Asia, India and Sri Lanka. The contemporary distribution of these lineages on the historical Laurasian and Gondwanan landmasses make scincines an ideal system to study the roles of vicariance and dispersal on a geologic scale of tens of millions of years.LocationGlobal.TaxonSubfamily Scincinae (Family Scincidae).MethodsWe conducted biogeographic analyses on a reconstructed, time‐calibrated species tree of scincine genera, including members of the other Scincidae subfamilies, using seven nuclear loci (~6 k base pairs). We also constructed a lineage‐through‐time plot to assess the timing of diversification within scincines.ResultsOur analysis estimated strong support for the monophyly of Scincinae that is further comprised a strongly‐supported Gondwanan clade nested within a broader Laurasian group. While most of the extant, genus‐level diversity within the Gondwanan clade was accrued post‐Eocene, the majority of the Laurasian lineages diverged during the Palaeocene or earlier, suggesting large‐scale extinctions on continents of Laurasian origin. Counterintuitively, scincines from India and Sri Lanka have distinct biogeographical origins despite a long tectonic association between these landmasses, suggesting at least two independent, long‐distance, trans‐oceanic dispersal events into the subcontinent. Our biogeographic analyses suggest that scincines likely originated in East and Southeast Asia during the late Cretaceous (ca. 70 Ma), and eventually dispersed westwards to Africa and Madagascar, where their greatest current‐day species richness occurs.Main ConclusionsOur study demonstrates the concomitant roles of dispersal and extinction in shaping modern‐day assemblages of ancient clades such as scincine lizards. Our range evolution analysis shows that despite the greater diversity observed in the Afro‐Madagascan region, the origin of scincines can be traced back to Southeast Asia and East Asia, followed by westward dispersals. These dispersals may have been followed by significant extinctions in tropical East Asia, resulting in relatively lower diversity of scincines in these regions. Notably, our analysis reveals that Sri Lankan and Peninsular Indian scincines have distinct evolutionary origins.

Ancient Hybridisation Fuelled Diversification in Acropora Corals.

Introgression is the infiltration or flow of genes from one species to another through hybridisation followed by backcrossing. This may lead to incorrect phylogenetic reconstruction or divergence-time estimation. Acropora is a dominant genus of reef-building corals; however, whether this group has an introgression history before their diversification remains unclear, and previous divergence-time estimates of Acropora have not considered the impact of introgression. In this study, we broke through the limitation of a few genes and a few species and proved the existence of ancient introgression in the evolution of Acropora from whole-genome protein-coding sequences. We inferred 21.9% of all triplet loci (homologous loci from three different species) with a history of introgression and a series of introgression events with a genetic material contribution of up to 30.9% before diversification. Furthermore, 7756 nuclear loci were clustered into three groups using a multidimensional scaling algorithm, the heterogeneity of which resulted in different phylogenetic relationships. The diversification time of Acropora was estimated to be middle to late Miocene when we retained only the gene group with the lowest degree of introgression. The collision of Australia with the Pacific arcs and the Southeast Asian margin in the early Miocene, and a series of cooling events in the middle to late Miocene, may provide geographical and climatic conditions for the diversification of Acropora, respectively. Therefore, our results indicate that at the genome-wide level, ancient introgressive hybridisation may have promoted the radiation evolution of Acropora. Based on our results, the influence of introgression should be taken into account when reconstructing phylogenetic relationships and evaluating divergence time.

Bayesian tip-dated timeline for diversification and major biogeographic events in Muroidea (Rodentia), the largest mammalian radiation

BackgroundExtinct organisms provide vital information about the time of origination and biogeography of extant groups. The development of phylogenetic methods to study evolutionary processes through time has revolutionized the field of evolutionary biology and led to an unprecedented expansion of our knowledge of the tree of life. Recent developments applying Bayesian approaches, using fossil taxa as tips to be included alongside their living relatives, have revitalized the use of morphological data in evolutionary tree inferences. Eumuroida rodents represent the largest group of mammals including more than a quarter of all extant mammals and have a rich fossil record spanning the last ~ 45 million years. Despite this wealth of data, our current understanding of the classification, major biogeographic patterns, and divergence times for this group comes from molecular phylogenies that use fossils only as a source of node calibrations. However, node calibrations impose several constraints on tree topology and must necessarily make a priori assumptions about the placement of fossil taxa without testing their placement in the tree.ResultsWe present the first morphological dataset with extensive fossil sampling for Muroidea. By applying Bayesian morphological clocks with tip dating and process-based biogeographic models, we provide a novel hypothesis for muroid relationships and revised divergence times for the clade that incorporates uncertainty in the placement of all fossil species. Even under strong violation of the clock model, we found strong congruence between results for divergence times, providing a robust timeline for muroid diversification. This new timeline was used for biogeographic analyses, which revealed a dynamic scenario mostly explained by dispersal events between and within the Palearctic and North African regions.ConclusionsOur results provide important insights into the evolution of Muroidea rodents and clarify the evolutionary pathways of their main lineages. We exploited the advantage of tip dating Bayesian approaches in morphology-based datasets and provided a classification of the largest superfamily of mammals resulting from robust phylogenetic inference, inferring the biogeographical history, diversification, and divergence times of its major lineages.

Habitats, Plant Diversity, and Molecular Phylogeny of Endemic Relic Species Incarvillea semiretschenskia (Bignoniaceae).

Incarvillea semiretschenskia (B. Fedtsch.) Grierson is listed in the Red Data Book of Kazakhstan as a rare relic, narrowly endemic species of the Shu-Ile low mountains (Kazakhstan). The aim of this research was to advance our knowledge of the ecological conditions of its habitats, the floristic composition of plant communities, and molecular phylogeny, as well as to identify threats to the species' existence. The ecological conditions of I. semiretschenskia habitats are rocky slopes and intermountain valleys of the low mountains in the altitude range from 812 to 1075 m asl with light chestnut mountain soils of little development, having a light granulometric composition and containing insignificant amounts of organic matter. We revealed 164 species of vascular plants in the communities of I. semiretschenskia, including five endemics and five species from the Red Data Book of Kazakhstan. Anthropogenic factors associated with grazing, fires, and limestone mining were identified as leading to a decrease in the number and density of populations. New insights into the relationship and time of diversification in the genus Incarvillea are gained through the use of several accessions of I. semiretschenskia and I. potaninii Batalin in the phylogenetic study. Preliminary fingerprint analysis shows relatively high genetic variability within populations of I. semiretschenskia. This unique relic species has survived since the Miocene epoch and exists to this day only in the Shu-Ile low mountains. To preserve this rare species, measures are proposed to create plant micro-reserves to provide ex situ collections and ensure future in situ restoration efforts.

Species limits in Wiedomys (Cricetidae: Sigmodontinae) reinforce the South American São Francisco River as a biogeographic barrier

Abstract Red-nosed mice (genus Wiedomys) are restricted to the Brazilian Cerrado and Caatinga biomes, distributed along the São Francisco River (SFR). Until recently, Wiedomys was considered monotypic, but 2 species with poorly defined geographic and morphological limits have been recognized: W. cerradensis and W. pyrrhorhinos. Our study used morphological, phylogenetic, and cytogenetic analyses to review and detail species limits within the genus and test whether the SFR could be associated with divergence between lineages. This integrative approach indicated that the SFR delineates the geographic boundaries between species, with W. pyrrhorhinos on the right bank and W. cerradensis on the left bank. The species are reciprocally monophyletic and diverge in cranial size, nasal morphology, and facial pelage color pattern. Karyotypic differences between and within W. pyrrhorhinos and W. cerradensis were also detected, and new chromosome complements (2n = 62, FN = 96 and 2n = 62, FN = 88, respectively) were found. Divergence time (0.339 to 0.025 Ma) is concordant with the timing of diversification of other co-distributed vertebrate taxa, and close to a younger estimate for the formation of SFR’s recent lower course to the east coast. Therefore, our study considerably expands knowledge of the geographic range of the genus, diagnoses of species, karyotypic variability between and within species, and reinforces the role of SFR as an important vicariant barrier in northeastern Brazil.

A Phylogenomic Backbone for Acoelomorpha Inferred from Transcriptomic Data.

Xenacoelomorpha are mostly microscopic, morphologically simple worms, lacking many structures typical of other bilaterians. Xenacoelomorphs -which include three main groups: Acoela, Nemertodermatida, and Xenoturbella- have been proposed to be an early diverging Bilateria, sister to protostomes and deuterostomes, but other phylogenomic analyses have recovered this clade nested within the deuterostomes, as sister to Ambulacraria. The position of Xenacoelomorpha within the metazoan tree has understandably attracted a lot of attention, overshadowing the study of phylogenetic relationships within this group. Given that Xenoturbella includes only six species whose relationships are well understood, we decided to focus on the most speciose Acoelomorpha (Acoela + Nemertodermatida). Here, we have sequenced 29 transcriptomes, doubling the number of sequenced species, to infer a backbone tree for Acoelomorpha based on genomic data. The recovered topology is mostly congruent with previous studies. The most important difference is the recovery of Paratomella as the first off-shoot within Acoela, dramatically changing the reconstruction of the ancestral acoel. Besides, we have detected incongruence between the gene trees and the species tree, likely linked to incomplete lineage sorting, and some signal of introgression between the families Dakuidae and Mecynostomidae, which hampers inferring the correct placement of this family and, particularly, of the genus Notocelis. We have also used this dataset to infer for the first time diversification times within Acoelomorpha, which coincide with known bilaterian diversification and extinction events. Given the importance of morphological data in acoelomorph phylogenetics, we tested several partitions and models. Although morphological data failed to recover a robust phylogeny, phylogenetic placement has proven to be a suitable alternative when a reference phylogeny is available.

A new dentition-based phylogeny of Litopterna (Mammalia: Placentalia) and ‘archaic’ South American ungulates

Abstract Ever since the discovery of Macrauchenia patachonica by Charles Darwin in 1834, the affinities of litopterns—a group of extinct South American Native Ungulates (SANUs)—have been elusive. In particular, the interfamilial relationships and timing of the familial diversification within the order Litopterna have not been addressed with adequate taxon and character sampling, and modern phylogenetic methods. We address these issues using a new morphological matrix of 703 dental and mandibular characters, scored for the earliest litopterns alongside early SANUs of other orders (Astrapotheria, Notoungulata, Pyrotheria, and Xenungulata). We also included members of families that have been often included within Litopterna, such as Didolodontidae, Protolipternidae, Indaleciidae, and Notonychopidae, the last two sometimes grouped in the order Notopterna. We conducted maximum parsimony and undated and tip-dated Bayesian phylogenetic analyses. Our results indicate that (1) didolodontids, protolipternids, and kollpaniines should be considered early SANUs, but not particularly closely related to any order, (2) Indaleciidae and Notonychopidae usually form a monophyletic group (Notopterna), and (3) Litopterna is a monophyletic unit composed of four families [Adianthidae, Anisolambdidae (subfamilies Anisolambdinae and Sparnotheriodontinae), Macraucheniidae, Proterotheriidae], and tentatively the notoptern families Indaleciidae and Notonychopidae with a probable origin ~64.0 Mya in the Early Palaeocene.

Whole genome phylogenomics helps to resolve the phylogenetic position of the Zygothrica genus group (Diptera, Drosophilidae) and the causes of previous incongruences

Incomplete Lineage Sorting (ILS) and introgression are among the two main factors causing incongruence between gene and species trees. Advances in phylogenomic studies have allowed us to overcome most of these issues, providing reliable phylogenetic hypotheses while revealing the underlying evolutionary scenario. Across the last century, many incongruent phylogenetic reconstructions were recovered for Drosophilidae, employing a limited sampling of genetic markers or species. In these studies, the monophyly and the phylogenetic positioning of the Zygothrica genus group stood out as one of the most controversial questions. Thus, here, we addressed these issues using a phylogenomic approach, while accessing the influence of ILS and introgressions on the diversification of these species and addressing the spatio-temporal scenario associated with their evolution. For this task, the genomes of nine specimens from six Neotropical species belonging to the Zygothrica genus group were sequenced and evaluated in a phylogenetic framework encompassing other 39 species of Drosophilidae. Nucleotide and amino acid sequences recovered for a set of 2,534 single-copy genes by BUSCO were employed to reconstruct maximum likelihood (ML) concatenated and multi-species coalescent (MSC) trees. Likelihood mapping, quartet sampling, and reticulation tests were employed to infer the level and causes of incongruence. Lastly, a penalized-likelihood molecular clock strategy with fossil calibrations was performed to infer divergence times. Taken together, our results recovered the subdivision of Drosophila into six different lineages, one of which clusters species of the Zygothrica genus group (except for H. duncani). The divergence of this lineage was dated to Oligocene ∼ 31 Mya and seems to have occurred in the same timeframe as other key diversification within Drosophila. According to the concatenated and MSC strategies, this lineage is sister to the clade joining Drosophila (Siphlodora) with the Hawaiian Drosophila and Scaptomyza. Likelihood mapping, quartet sampling, reticulation reconstructions as well as introgression tests revealed that this lineage was the target of several hybridization events involving the ancestors of different Drosophila lineages. Thus, our results generally show introgression as a major source of previous incongruence. Nevertheless, the similar diversification times recovered for several of the Neotropical Drosophila lineages also support the scenario of multiple and simultaneous diversifications taking place at the base of Drosophilidae phylogeny, at least in the Neotropics.

Fossils can reveal a long-vanished combination of character states: Evidence from a mysterious foliicolous anamorphic fungus from the Middle Siwalik (Late Miocene) of Himachal Pradesh, India

ABSTRACT Fossils can unveil a long-vanished combination of character states that inform inferences about the timing and patterns of diversification of modern fungi. By examining the well-preserved stacked chained vesicular conidiophores developed in clusters from the basal stroma, we describe a new taxon of fossil Zygosporiaceae with a combination of characters unknown among extant taxa on compressed serrated-margined dicot leaf (cf. Fagaceae) recovered from the Siwalik sediments (Late Miocene; ca. 12–8 Ma) of Himachal Pradesh, western Himalaya. Based upon conidiophore morphology, our Siwalik fungal remains, similar to Zygosporium Mont. (Zygosporiaceae: Xylariales: Sordariomycetes), are recognized as a new fossil species, Z. stromaticum Kundu & Khan, sp. nov. Zygosporium stromaticum is the only known fossil anamorphic fungus that occurs on plant cuticles and has a cluster of stacked chained vesicular conidiophores arising from a poorly preserved basal stroma formed by irregular, thick-walled cells. Its combination of morphological characteristics is unknown in extant fungal taxa, so Z. stromaticum likely represents a new anamorphic foliicolous fungus that may now be extinct. This unique evidence may be essential for the calibration of divergence time estimations of fungal lineages.

Phylogeny and diversification analyses of extant planthopper families (Hemiptera: Fulgoromorpha) based on a mitochondrial dataset reveal ancient lineages originating during the Jurassic and originally feeding on gymnosperms

Abstract Phylogenetic analyses of planthoppers were conducted using a mitogenome dataset to examine the evolutionary relationships of current families based on both maximum likelihood (ML) and Bayesian inference methods. Delphacoidea, including Cixiidae and Delphacidae, and Fulgoroidea, including all other families, were consistently identified as monophyletic groups. However, Nogodinidae displayed a polyphyletic pattern, with various lineages emerging sister to several issidoid families. Variations were observed across different analyses in the positioning of (Dictyopharidae + Fulgoridae) and the relationships of Ricaniidae sister either to Issidae or to (Flatidae + Acanaloniidae). Several statistical tests indicate that the ML topology has the highest level of statistical confidence. The (Dictyopharidae + Fulgoridae) clade is best positioned as sister to (Derbidae + (Achilidae + (Tropiduchidae + other “higher” planthoppers families))) and the Ricaniidae as sister to (Flatidae + Acanaloniidae). With 13 fossil calibration points, origin times for Delphacoidea and Fulgoroidea were dated back to the Late Permian, approximately 257.46 million years ago. Delphacidae and Cixiidae split during the Late Triassic, while Fulgoroidea diversified earlier during the Middle Triassic. Divergence and diversification times are also provided for all other extant planthopper families. These results suggest that Delphacoidea and Fulgoroidea likely diverged from the older planthopper fossil families prior to the emergence of angiosperms and may have initially fed on gymnosperms and ancient ferns. The diversification of extant planthopper families occurred during the Jurassic and Cretaceous periods, influenced by evolving climatic conditions, the decline in gymnosperms, and the increasing diversity of angiosperm plants.

All-in-one strategy to develop a near-infrared triggered multifunctional bioactive magnesium phosphate bone cement for bone repair

Bone cement is widely used in clinical with optimistic filling and mechanical properties. However, the setting time of bone cement is difficult to accurately control, and the existing bone cements exhibit limited therapeutic functionalities. In response to these challenges, we designed and synthesized Nd-doped whitlockite (Nd-WH), endowing bone cement with photothermal-responsive and fluorescence imaging capabilities. The doping amount and photothermal properties of Nd-doped whitlockite were studied, and the composite bone cement was prepared. The results showed that the setting time of bone cement could be regulated by near infrared irradiation, and the multiple functions of promoting osteogenic differentiation, antibacterial and anti-tumor could be realized by adjusting the power and irradiation time of near infrared. By incorporating Nd-doped whitlockite and bone cement, we developed an all-in-one strategy to achieve setting time control, enhanced osteogenic ability, tumor cell clearance, bacterial clearance, and bone tissue regeneration. The optimized physical and mechanical properties of composite bone cement ensure adaptability and plasticity. In vitro and in vivo experiments validated the effectiveness of this bone cement platform for bone repair, tumor cell clearance and bacterial clearance. The universal methods to regulate the setting time and function of bone cement by photothermal effect has potential in orthopedic surgery and is expected to be a breakthrough in the field of bone defect repair. Further research and clinical validation are needed to ensure its safety, efficacy and sustainability. Statement of significanceBone cement is a valuable clinical material. However, the setting time of bone cement is difficult to control, and the therapeutic function of existing bone cement is limited. Various studies have shown that the bone repair capacity of bone cements can be enhanced by synergistic stimulatory effects in vivo and ex vivo. Unfortunately, most of the existing photothermal conversion materials are non-degradable and poorly biocompatible. This study provides a bone-like photothermal conversion material with photothermal response and fluorescence imaging properties, and constructed a platform for integrated regulation of the setting time of bone cement and diversification of its functions. Therefore, it helps to design multi-functional bone repair materials that are more convenient and effective in clinical operation.

Phylogeny, chronology, and phylogeography in Australasian Hypnodendraceae

Abstract The Hypnodendrales form the sister group to all other pleurcarpous mosses in the superorder Hypnanae. Many species are closely associated with the cool temperate rainforests of Australasia, while others are widespread in higher altitude wet forests across tropical South-East Asia. Several of the Malesian entities are taxonomically ambiguous, having been variously treated as species complexes or as single very variable species. Here we use dated phylogenies to examine the timing of diversification of major clades within the Hypnodendrales, test the hypothesis that widespread, taxonomically problematic species have diversified relatively recently in South-East Asia from within clades of southern temperate origin, and address taxonomic questions within Hypnodendron. A chronogram with broad taxonomic sampling is constructed, followed by a second dated phylogeny with dense sampling from Hypnodendron vitiense, a representative morphologically variable species found throughout Eastern Australia and South-East Asia. The crown group Hypnodendrales are found to have originated in the mid-Cretaceous, although they share a Most Recent Common Ancestor (MRCA) with the other Hypnanae in the late Jurassic. Extant members of Hypnodendron share a MRCA ±28 Mya, a little before the start of the collision of Australia with the Sunda plate that initiated the Australasian–Malesian floristic interchange. Within H. vitiense, there is strong phylogenetic structure consistent with the diversification and isolation of populations in South-East Asia within the last 10 Mya. The New Zealand endemic H. marginatum is found to be derived from within an Australasian clade of H. vitiense, this in turn being distinct from a South-East Asian/tropical Australian H. vitiense clade. Our results suggest that the phylogeography of this prominent group of mosses closely mirrors that of the rainforest ecosystems of which they are a part.

Oldest record of Machimosaurini (Thalattosuchia, Teleosauroidea): teeth and scavenging traces from the Middle Jurassic (Bajocian) of Switzerland.

The Jurassic period was a time of major diversification for Mesozoic marine reptiles, including Ichthyosauria, Plesiosauria and thalattosuchian Crocodylomorpha. The latter originated in the Early Jurassic and thrived during the Late Jurassic. Unfortunately, the Middle Jurassic, a crucial time in their evolution, has a poor fossil record. Here, we document the first evidence of macrophagous/durophagous Machimosaurini-tribe teleosauroid thalattosuchians from the late Bajocian (ca 169 Ma) in the form of three robust tooth crowns with conical blunt shapes and anastomosed pattern of thick enamel ridges towards the apex, associated with the skeleton of a large ichthyosaur lacking preserved tooth crowns. The tooth crowns were found on the posterior section of the lower jaw (left angular), a lacrimal and the axis neural arch of the ichthyosaur. In addition, some of the distal sections of the posterior dorsal ribs of the ichthyosaur skeleton exhibit rounded bite marks and some elongated furrows that fit in size and shape with the Machimosaurini teeth. These marks, together with the absence of healing in the rib bone are interpreted here as the indicators of peri- to post-mortem scavenging by a Machimosaurini teleosauroid after the large ichthyosaur carcass settled on the floor of a shallow ocean.

The evolutionary history of Coleoptera (Insecta) in the late Palaeozoic and the Mesozoic

AbstractRecent progress in beetle palaeontology has incited us to re‐address the evolutionary history of the group. The Permian †Tshekardocoleidae had elytra that covered the posterior body in a loose tent‐like manner. The formation of elytral epipleura and a tight fit of elytra and abdomen were important evolutionary transformations in the Middle Permian, resulting in a tightly enclosed subelytral space. Permian families were likely associated with dead wood of gymnospermous trees. The end‐Permian extinction event resulted in a turnover in the composition of beetle faunas, especially a decline of large‐bodied wood‐associated forms. Adephaga and Myxophaga underwent a first wave of diversification in the Triassic. Polyphaga are very rare in this period. The first wave of diversification of this suborder occurs in the Jurassic, with fossils of Elateriformia, Staphyliniformia and Cucujiformia. The Cretaceous fossil record has been tremendously enriched by the discovery of amber inclusions. Numerous fossils represent all major polyphagan lineages and also the remaining suborders. Improved analytical methods for documenting and placing extinct taxa are discussed. Different factors have played a role in the diversification of beetles. The enormous number of species associated with flowering plants, and timing and patterns of diversification in phytophagous lineages indicate that the angiosperm radiation played a major role in beetle macroevolution. Moreover, the evolution of intimate partnerships with symbionts and the acquisition of novel genes—obtained from fungi and bacteria via horizontal gene transfers—facilitated the use of plant material as a food source and were key innovations in the diversification of plant‐feeding beetles.

Farmer Perceptions to Climate Variability and Adaption Strategies in Nangrahar Province

Climate change is a major obstacal for farmers in the least developed countries such as Afghanistan and adaptation care is extremely scarce. This paper provides evience on the farmers’ perceptions regarding climate change, its impact and identification of best coping strategies in Nangarhar province. To do this end, we collected primary data from 384 farmers whom we interviewd across the three most affected district in the province. We employ percent analysis and Garrett rankingmethods to estimate the farmers perceptions, impact and coping strategies regarding climate change in the area. Farthermore, farmers percieved increased change in temperature (92.22%) and occurrence of drought (91.39%) respectively. Based on study findings, drying of water resources (96.46%), crop failure (85.32%) and making sarounding dring (82,03%) were observed as major impacts on farmers livelihoods of climate change. Therefore, drilling new bore well, change in time of farm operations and farm diversification were percieved and recommended as top ranked strategies to cope with climate change in Nangarhar.

Amazons Are Back: Absence of Males in a Praying Mantis from Uruguayan Savannas.

With a broad distribution throughout South America, Brunneria subaptera (Saussure)(Coptopterygidae) is the most abundant praying mantis species in Uruguay, mostly associated with grassland vegetation. Their body coloration can vary between green or brown sepia. The recent catalog of Uruguayan mantids showed that all specimens of B. subaptera from the collections in Uruguay were females, suggesting an absence of males in natural populations. The aim of this study was to determine the occurrence of female-only populations of B. subaptera in Uruguay. Moreover, we analyzed the genetic variation and estimated the time of the most recent common ancestor of the species. We performed bimonthly samplings in two localities in Uruguay for 1year and we sexed the individuals. We extracted DNA from the abdominal tissue of adult females and sequenced a fragment of the mitochondrial cox1 gene to assess the genetic diversity and to estimate diversification times. We did not find any males in either of the studied localities. The age estimates revealed a recent origin of the species (2.33Ma), and there was no genetic differentiation between the individuals from Uruguayan localities. This absence of males of B. subaptera documented in the sampled locations suggests that the species reproduces by thelytokous parthenogenesis. This study opens promising venues for future research into reproductive strategies and polymorphism in South-American praying mantises that inhabit one of the largest areas of grasslands in the world, currently under dramatic deterioration and reduction.

Equine herpesvirus 4 infected domestic horses associated with Sintashta spoke-wheeled chariots around 4,000 years ago.

Equine viral outbreaks have disrupted the socio-economic life of past human societies up until the late 19th century and continue to be of major concern to the horse industry today. With a seroprevalence of 60-80 per cent, equine herpesvirus 4 (EHV-4) is the most common horse pathogen on the planet. Yet, its evolutionary history remains understudied. Here, we screen the sequenced data of 264 archaeological horse remains to detect the presence of EHV-4. We recover the first ancient EHV-4 genome with 4.2× average depth-of-coverage from a specimen excavated in the Southeastern Urals and dated to the Early Bronze Age period, approximately 3,900 years ago. The recovery of an EHV-4 virus outside the upper respiratory tract not only points to an animal particularly infected but also highlights the importance of post-cranial bones in pathogen characterisation. Bayesian phylogenetic reconstruction provides a minimal time estimate for EHV-4 diversification to around 4,000 years ago, a time when modern domestic horses spread across the Central Asian steppes together with spoke-wheeled Sintashta chariots, or earlier. The analyses also considerably revise the diversification time of the two EHV-4 subclades from the 16th century based solely on modern data to nearly a thousand years ago. Our study paves the way for a robust reconstruction of the history of non-human pathogens and their impact on animal health.

Revised chronology of Trichoptera evolution

Based on a recalibrated BEAST diversification time analysis, we provide a revised chronology for the evolution of major lineages of Trichoptera. Fossil evidence indicates that caddisflies evolved at least by the Norian of Late Triassic (median age 222.6 Ma), compared with our estimate of at least 201.3 Ma. The ancestors of suborders Annulipalpia and Integripalpia also evolved as early as the Norian. Fossil evidence indicates that the ancestor of subterorder Phryganides lived at least by the Aalenian of Middle Jurassic (median age 173.6 Ma), compared with our estimate of at least 174.1 Ma.