This paper discusses the formation and preservation of a fluvial tufa system influenced by Atlantic climate based on stratigraphical, chronological (amino-acid racemization, AAR), sedimentological and stable-isotope analyses. On the southwestern Iberian Peninsula, the tufas and associated deposits of the Almonda River valley occur as isolated terraced bodies and reach 25 m thick. AAR dated most deposits to within the warm Marine Isotope Stage 5 (MIS-5). Two Holocene ages were reset within MIS-5 based on diverse criteria. Widely varied carbonate and minor allochthonous coarse detrital facies occur arranged in four simple vertical associations. The deposit geometry and facies association distribution correspond to a low- to moderate-sloped fluvial valley consisting of several short knickpoints and extensive flat areas between them. The latter are occupied by slow-flowing water facies (carbonate sand, lime mud, phytoclast and oncoid rudstones, and up-growing stem boundstones). Facies that formed in moderate- to high-slope substrates were stromatolite, moss and down-growing stem boundstones. The homogeneous Miocene bedrock lithology and gentle structural deformation propitiated this depositional architecture. Calcite δ13C and δ18O values suggest that the aquifer water provided the outflowing Almonda water with (1) 18O-enriched water, compared with present precipitation and groundwater δ18O values, and (2) 13C-depleted CO2 from bituminous rocks and vegetation cover in the catchment. The proximity to the Atlantic coast favoured the Mesozoic-rock aquifer recharge with 18O-enriched water precipitation, assuring water availability during the formation of the studied tufas. No evidence of frequent intense erosion phases might indicate stable precipitation regimes, which would have allowed the preservation of loose fine-grained and palustrine deposits.