Diurnal Conditions Research Articles

Death eaters respond to the dark mark of decomposition day and night: observations of initial insect activity on piglet carcasses.

Some insect taxa can be of critical importance for criminal investigations because they can be used to assist with a time since death determination. Blow flies (Diptera: Calliphoridae) often are the initial colonizers of a carcass, usually arriving within minutes to hours after carcass exposure during the day. Other insects, such as coleopterans and hymenopterans, can arrive to a carcass during early colonization and affect blow fly development. However, the extent of these interactions remains unclear. This study analyzed the initial 6h after a piglet carcass was placed out in two locations (rural and urban) in diurnal and nocturnal conditions with continuous video recording and hourly observations. Four piglets were placed out every 2weeks over the summer of 2014. Initial blow fly arrivals to the carcasses were only recorded during diurnal conditions, and a checklist of orders associated with each environment (time and location) was created. During diurnal conditions, initial blow fly arrival times in rural environments were significantly faster than those in urban, arriving as quickly as 23s after exposure. These observations also included a novel interaction with Vespidae, which to the best of our knowledge has not been seen in the literature before. This experiment provides baseline data on early insect colonization in two environments in New Jersey, and lends insight into insect interactions that could affect initial colonization.

Molecular convergence of clock and photosensory pathways through PIF3–TOC1 interaction and co-occupancy of target promoters

A mechanism for integrating light perception and the endogenous circadian clock is central to a plant's capacity to coordinate its growth and development with the prevailing daily light/dark cycles. Under short-day (SD) photocycles, hypocotyl elongation is maximal at dawn, being promoted by the collective activity of a quartet of transcription factors, called PIF1, PIF3, PIF4, and PIF5 (phytochrome-interacting factors). PIF protein abundance in SDs oscillates as a balance between synthesis and photoactivated-phytochrome-imposed degradation, with maximum levels accumulating at the end of the long night. Previous evidence shows that elongation under diurnal conditions (as well as in shade) is also subjected to circadian gating. However, the mechanism underlying these phenomena is incompletely understood. Here we show that the PIFs and the core clock component Timing of CAB expression 1 (TOC1) display coincident cobinding to the promoters of predawn-phased, growth-related genes under SD conditions. TOC1 interacts with the PIFs and represses their transcriptional activation activity, antagonizing PIF-induced growth. Given the dynamics of TOC1 abundance (displaying high postdusk levels that progressively decline during the long night), our data suggest that TOC1 functions to provide a direct output from the core clock that transiently constrains the growth-promoting activity of the accumulating PIFs early postdusk, thereby gating growth to predawn, when conditions for cell elongation are optimal. These findings unveil a previously unrecognized mechanism whereby a core circadian clock output signal converges immediately with the phytochrome photosensory pathway to coregulate directly the activity of the PIF transcription factors positioned at the apex of a transcriptional network that regulates a diversity of downstream morphogenic responses.

The Impact of the Optical Properties and Respiration of Algal Cells with Truncated Antennae on Biomass Production Under Simulated Outdoor Conditions

Background: Previous studies have shown the positive effect of genetically induced antenna truncation on the photosynthetic performance of mutant strains (tla). From the increase of maximum photosynthesis rates per unit chlorophyll under saturating irradiance, it has been concluded that photobioreactors with tla mutants could be operated at higher cell numbers and should show increased biomass production under high irradiance. Objective: The potential of three wild type (WT) strains and one tla mutant of Chlamydomonas reinhardtii to adjust cellular Chlorophyll content (Chlcell) in response to different light conditions and its consequences for the cell physiology was investigated. Results: Under high growth irradiance, some WT strains can achieve a comparable level of antenna reduction as observed in the tla mutant. Respiration and maximum photosynthesis rate showed an inverse correlation with Chlcell independently of whether antenna size reduction was achieved by light adaptation or by genetic transformation. Thus, under diurnal light conditions increased respiratory losses compensate for increased photosynthesis rates and exert negative impact on biomass production. The reduction of Chlcell inevitably resulted in an increase of the absorption efficiency of Chl. This implies that cell number and transparency in a bioreactor cannot be increased to a similar extent as expected from Chlcell reduction. Conclusion: Under natural light conditions, the negative impact of increased respiration and absorptivity of antenna truncated cells has to be taken into account to judge the biomass production potential of antenna truncated alga strains. A further reduction of antenna size beyond the current degree could even decrease biomass productivity. Alternative approaches to increase biomass productivity of photobioreactors are suggested. Keywords: antenna truncation, tla mutants, biomass production, Chlamydomonas reinhardtii Keywords: antenna truncation, tla mutants, biomass production, Chlamydomonas reinhardtii.

2,3 Butanediol production in an obligate photoautotrophic cyanobacterium in dark conditions via diverse sugar consumption

Cyanobacteria are under investigation as a means to utilize light energy to directly recycle CO2 into chemical compounds currently derived from petroleum. Any large-scale photosynthetic production scheme must rely on natural sunlight for energy, thereby limiting production time to only lighted hours during the day. Here, an obligate photoautotrophic cyanobacterium was engineered for enhanced production of 2,3-butanediol (23BD) in continuous light, 12h:12h light-dark diurnal, and continuous dark conditions via supplementation with glucose or xylose. This study achieved 23BD production under diurnal conditions comparable to production under continuous light conditions. The maximum 23BD titer was 3.0gL−1 in 10d. Also achieving chemical production under dark conditions, this work enhances the feasibility of using cyanobacteria as industrial chemical-producing microbes.

Shifting Nicotiana attenuata's diurnal rhythm does not alter its resistance to the specialist herbivore Manduca sexta.

Arabidopsis thaliana plants are less resistant to attack by the generalist lepidopteran herbivore Trichoplusia ni when plants and herbivores are entrained to opposite, versus identical diurnal cycles and tested under constant conditions. This effect is associated with circadian fluctuations in levels of jasmonic acid, the transcription factor MYC2, and glucosinolate contents in leaves. We tested whether a similar effect could be observed in a different plant-herbivore system: the wild tobacco Nicotiana attenuata and its co-evolved specialist herbivore, Manduca sexta. We measured larval growth on plants under both constant and diurnal conditions following identical or opposite entrainment, profiled the metabolome of attacked leaf tissue, quantified specific metabolites known to reduce M. sexta growth, and monitored M. sexta feeding activity under all experimental conditions. Entrainment did not consistently affect M. sexta growth or plant defense induction. However, both were reduced under constant dark conditions, as was M. sexta feeding activity. Our data indicate that the response induced by M. sexta in N. attenuata is robust to diurnal cues and independent of plant or herbivore entrainment. We propose that while the patterns of constitutive or general damage-induced defense may undergo circadian fluctuation, the orchestration of specific induced responses is more complex.

Diurnal Corticosterone Presence and Phase Modulate Clock Gene Expression in the Male Rat Prefrontal Cortex.

Mood disorders are associated with dysregulation of prefrontal cortex (PFC) function, circadian rhythms, and diurnal glucocorticoid (corticosterone [CORT]) circulation. Entrainment of clock gene expression in some peripheral tissues depends on CORT. In this study, we characterized over the course of the day the mRNA expression pattern of the core clock genes Per1, Per2, and Bmal1 in the male rat PFC and suprachiasmatic nucleus (SCN) under different diurnal CORT conditions. In experiment 1, rats were left adrenal-intact (sham) or were adrenalectomized (ADX) followed by 10 daily antiphasic (opposite time of day of the endogenous CORT peak) ip injections of either vehicle or 2.5 mg/kg CORT. In experiment 2, all rats received ADX surgery followed by 13 daily injections of vehicle or CORT either antiphasic or in-phase with the endogenous CORT peak. In sham rats clock gene mRNA levels displayed a diurnal pattern of expression in the PFC and the SCN, but the phase differed between the 2 structures. ADX substantially altered clock gene expression patterns in the PFC. This alteration was normalized by in-phase CORT treatment, whereas antiphasic CORT treatment appears to have eliminated a diurnal pattern (Per1 and Bmal1) or dampened/inverted its phase (Per2). There was very little effect of CORT condition on clock gene expression in the SCN. These experiments suggest that an important component of glucocorticoid circadian physiology entails CORT regulation of the molecular clock in the PFC. Consequently, they also point to a possible mechanism that contributes to PFC disrupted function in disorders associated with abnormal CORT circulation.

Questionnaire and Intervention Study on Effects of Drinking Cows’ Milk at Breakfast on the Circadian Typology and Mental Health of Japanese Infants Aged 1 - 6 Years

This study examines relationship between drinking cows’ milk at breakfast and several mental and physical characteristics (the diurnal type, sleep habits and mental condition as anger, out of control of emotion, irritation and depression) of Japanese small children aged 1 - 6 years old. A questionnaire study and an intervention one were performed in this study. An integrated questionnaire was administered, in July 2014 to 1112 participants attending one of 10 nursery school and 1 kindergarten located in Kochi (33°N, 133°E), Japan, and 582 parents (mostly mothers) which answered it instead of children (rate of answer: 51.9%). Intervention was done to 111 children attending the kindergarten. Seventy six parents answered the questionnaire which was administered 3 months after the intervention days of 21 (rate of answer: 51.9%). There are two contents of intervention, one is the distribution of cows’ milk for 21 days to be drunk at breakfast and another is the distribution of leaflet entitled “Go to bed early! Get up early! and Take nutritionally rich breakfast and cows’ milk!” just before the intervention. Just before the intervention, letter was distributed to 111 parents who were asked for their children to follow the contents of the leaflet and drink the cows’ milk distributed every day for the 21 days. Small children who drink cows’ milk at breakfast more than once per week and take nutritionally rich breakfast more than 4 times per week are more morning-typed than the other three groups in which children fit into one or none of the two issues of taking morning cows’ milk and rich breakfast (p p = 0.004). Also there was positive correlation between the implementation value for the 21 days and the diurnal type score 3 months later (r = 0.301, p = 0.018). Drinking cows’ milk at breakfast seems to be effective for small children to become more morning-typed through two sets of syntheses from tryptophan via serotonin into melatonin in the evening.

Seizure phenotypes, periodicity, and sleep-wake pattern of seizures in Kcna-1 null mice.

This study was undertaken to describe seizure phenotypes, natural progression, sleep-wake patterns, as well as periodicity of seizures in Kcna-1 null mutant mice. These mice were implanted with epidural electroencephalography (EEG) and electromyography (EMG) electrodes, and simultaneous video-EEG recordings were obtained while animals were individually housed under either diurnal (LD) condition or constant darkness (DD) over ten days of recording. The video-EEG data were analyzed to identify electrographic and behavioral phenotypes and natural progression and to examine the periodicity of seizures. Sleep-wake patterns were analyzed to understand the distribution and onset of seizures across the sleep-wake cycle. Four electrographically and behaviorally distinct seizure types were observed. Regardless of lighting condition that animals were housed in, Kcna-1 null mice initially expressed only a few of the most severe seizure types that progressively increased in frequency and decreased in seizure severity. In addition, a circadian periodicity was noted, with seizures peaking in the first 12h of the Zeitgeber time (ZT) cycle, regardless of lighting conditions. Interestingly, seizure onset differed between lighting conditions where more seizures arose out of sleep in LD conditions, whereas under DD conditions, the majority occurred out of the wakeful state. We suggest that this model be used to understand the circadian pattern of seizures as well as the pathophysiological implications of sleep and circadian disturbances in limbic epilepsies.

The Evaluation of a New Method to Detect Mixing Layer Heights Using Lidar Observations

AbstractA new automatic mixing layer height detection method for lidar observations of aerosol backscatter profiles is presented and evaluated for robustness. The new detection method incorporates the strengths of Steyn et al.’s error function–ideal profile (ERF) method and Davis et al.’s wavelet covariance transform (WCT) method. These two methods are critical components of the new method, and their robustness is also evaluated and then contrasted to the new method. The new method is applied to aerosol backscatter observations in two ways: 1) by looking for the most realistic mixing height throughout the entire profile and 2) by searching for mixing height below significant elevated obscurations (e.g., clouds or aerosol layers). The first approach is referred to as the hybrid method and the second as the hybrid-lowest method. Coincident radiosounding observations of mixing heights are used to independently reference the lidar-based estimates.There were 4030 cases examined over a 5-yr period for mixing heights. The efficacy of the lidar-based methods was determined based on diurnal, seasonal, stability, and sky obscuration conditions. Of these conditions, the hybrid method performed best for unstable and cloudy situations. It determined mixing heights reliably (less than ±0.30-km bias) for close to 70% of those cases. The hybrid-lowest method performed best in stable and clear-sky conditions; it determined mixing heights reliably for over 70% of those cases. The WCT method performed the best overall.

Wooing during Day or Night is not the Same: an Experimental Study in the Wolf Spider Schizocosa malitiosa

AbstractDiurnal and nocturnal activity patterns shown by different species will strongly determine the characteristics of signals as well as the sensory channels used during sexual interactions. Despite this, few studies have experimentally tested the effects of lighting and time of day on courtship characteristics in arthropods. Previous studies have shown that the wolf spider Schizocosa malitiosa can be active during the day or at night. We tested whether the period of the day affects the sexual behavior of S. malitiosa, by pairing males and females under diurnal or nocturnal conditions. We carried out mating trials in diurnal and nocturnal conditions in arenas containing female refuges. In diurnal conditions, male leg shaking behavior occurred at higher rates and consisted of greater leg raising angles relatively to nocturnal conditions. We did not find differences in mounts and mount latency between both experimental groups. In nocturnal conditions, female attacks and emergence from refuges were higher. Also, although mount occurrence did not differ between the two treatments, mounts inside the refuge were more frequent in diurnal conditions. Results suggest behavioral flexibility in male courtship and female receptivity responses relative to the time of the day.

The circadian oscillator in Synechococcus elongatus controls metabolite partitioning during diurnal growth

Synechococcus elongatus PCC 7942 is a genetically tractable model cyanobacterium that has been engineered to produce industrially relevant biomolecules and is the best-studied model for a prokaryotic circadian clock. However, the organism is commonly grown in continuous light in the laboratory, and data on metabolic processes under diurnal conditions are lacking. Moreover, the influence of the circadian clock on diurnal metabolism has been investigated only briefly. Here, we demonstrate that the circadian oscillator influences rhythms of metabolism during diurnal growth, even though light-dark cycles can drive metabolic rhythms independently. Moreover, the phenotype associated with loss of the core oscillator protein, KaiC, is distinct from that caused by absence of the circadian output transcriptional regulator, RpaA (regulator of phycobilisome-associated A). Although RpaA activity is important for carbon degradation at night, KaiC is dispensable for those processes. Untargeted metabolomics analysis and glycogen kinetics suggest that functional KaiC is important for metabolite partitioning in the morning. Additionally, output from the oscillator functions to inhibit RpaA activity in the morning, and kaiC-null strains expressing a mutant KaiC phosphomimetic, KaiC-pST, in which the oscillator is locked in the most active output state, phenocopies a ΔrpaA strain. Inhibition of RpaA by the oscillator in the morning suppresses metabolic processes that normally are active at night, and kaiC-null strains show indications of oxidative pentose phosphate pathway activation as well as increased abundance of primary metabolites. Inhibitory clock output may serve to allow secondary metabolite biosynthesis in the morning, and some metabolites resulting from these processes may feed back to reinforce clock timing.

The influence of diurnal temperature variation on degree-day accumulation and insect life history.

Ectotherms, such as insects, experience non-constant temperatures in nature. Daily mean temperatures can be derived from the daily maximum and minimum temperatures. However, the converse is not true and environments with the same mean temperature can exhibit very different diurnal temperate ranges. Here we apply a degree-day model for development of the grape berry moth (Paralobesia viteana, a significant vineyard pest in the northeastern USA) to investigate how different diurnal temperature range conditions can influence degree-day accumulation and, hence, insect life history. We first consider changes in diurnal temperature range independent of changes in mean temperatures. We then investigate grape berry moth life history under potential climate change conditions, increasing mean temperature via variable patterns of change to diurnal temperature range. We predict that diurnal temperature range change can substantially alter insect life history. Altering diurnal temperature range independent of the mean temperature can affect development rate and voltinism, with the magnitude of the effects dependent on whether changes occur to the daily minimum temperature (Tmin), daily maximum temperature (Tmax), or both. Allowing for an increase in mean temperature produces more marked effects on life history but, again, the patterns and magnitude depend on the nature of the change to diurnal temperature range together with the starting conditions in the local environment. The study highlights the importance of characterizing the influence of diurnal temperature range in addition to mean temperature alone.

Glomerular filtration rate and albuminuria for detection and staging of acute and chronic kidney disease in adults: a systematic review.

Because early-stage kidney disease is asymptomatic and is associated with both morbidity and mortality, laboratory measurements are required for its detection. To summarize evidence supporting the use of laboratory tests for glomerular filtration rate (GFR) and albuminuria to detect and stage acute kidney injury, acute kidney diseases and disorders, and chronic kidney disease in adults. We reviewed recent guidelines from various professional groups identified via the National Guideline Clearing House and author knowledge, and systematically searched MEDLINE for other sources of evidence for selected topics. The KDIGO (Kidney Disease Improving Global Outcomes) guidelines define and stage acute and chronic kidney diseases by GFR and albuminuria. For initial assessment of GFR, measuring serum creatinine and reporting estimated GFR based on serum creatinine (eGFRcr) using the Chronic Kidney Disease Epidemiology Collaboration (CKD-EPI) 2009 equation is recommended. If confirmation of GFR is required because of conditions that affect serum creatinine independent of GFR (eg, extremes of muscle mass or diet), or interference with the assay, cystatin C should be measured and estimated GFR should be calculated and reported using cystatin C (eGFRcys) and serum creatinine (eGFRcr-cys) or GFR should be measured directly using a clearance procedure. Initial assessment of albuminuria includes measuring urine albumin and creatinine in an untimed spot urine collection and reporting albumin-to-creatinine ratio. If confirmation of albuminuria is required because of diurnal variation or conditions affecting creatinine excretion, such as extremes of muscle mass or diet, the albumin excretion rate should be measured from a timed urine collection. Detection and staging of acute and chronic kidney diseases can be relatively simple. Because of the morbidity and mortality associated with kidney disease, early diagnosis is important and should be pursued in at-risk populations.

Beyond symbiosis: cleaner shrimp clean up in culture.

Cleaner organisms exhibit a remarkable natural behaviour where they consume ectoparasites attached to “client” organisms. While this behaviour can be utilized as a natural method of parasitic disease control (or biocontrol), it is not known whether cleaner organisms can also limit reinfection from parasite eggs and larvae within the environment. Here we show that cleaner shrimp, Lysmata amboinensis, consume eggs and larvae of a harmful monogenean parasite, Neobenedenia sp., in aquaculture. Shrimp consumed parasite eggs under diurnal (63%) and nocturnal (14%) conditions as well as infectious larvae (oncomiracidia) diurnally (26%). Furthermore, we trialled the inclusion of cleaner shrimp for preventative parasite management of ornamental fish, Pseudanthias squamipinnis, and found shrimp reduced oncomiracidia infection success of host fish by half compared to controls (held without shrimp). Fish held without cleaner shrimp exhibited pigmentation changes as a result of infection, possibly indicative of a stress response. These results provide the first empirical evidence that cleaner organisms reduce parasite loads in the environment through non-symbiotic cleaning activities. Our research findings have relevance to aquaculture and the marine ornamental trade, where cleaner shrimp could be applied for prophylaxis and control of ectoparasite infections.

Analysis and optimal design of air quality monitoring networks using a variational approach

Air quality networks need revision and optimisation as instruments and network requirements, both scientific and societal, evolve over time. Assessing and optimising the information content of a monitoring network is a non-trivial problem. Here, we introduce a methodology formulated in a variational framework using an air quality model to simulate the dispersion of carbon monoxide (CO) as a passive tracer at the city scale. We address the specific case of adding or removing stations, and the more general situation of optimally distributing a given number of stations in a domain taking into account transport patterns and spatial factors such as population density and emission patterns. We consider three quality indicators: precision gain, information gain and degrees of freedom for a signal. These metrics are all functions of the singular values of the sensitivity matrix that links emissions and observations in the variational framework. We illustrate the application of the methodology in the case of Santiago (33.5°S, 70.5°W, 500 m a.s.l.), a city of ca. 7 million inhabitants with significant pollution levels. We deem information gain as the best of the above indicators for this case. We then quantify the actual evolution of Santiago's network and compare it with the optimal configuration suggested by our methodology and with results previously obtained using a statistical approach. The application is restricted to diurnal and summer conditions, for which the dispersion model shows a good agreement with observations. The current method offers advantages in that it allows extending a network to include new sites, and it explicitly considers the effects of dispersion patterns, and desired weighting functions such as emission fluxes and population density. We find that Santiago's air quality has improved two-fold since 1988, regarding CO under diurnal summer conditions. Still, according to our results, the current configuration could be improved by integrating more suburban stations in the southwest of the basin.

The diurnal logic of the expression of the chloroplast genome in Chlamydomonas reinhardtii.

Chloroplasts are derived from cyanobacteria and have retained a bacterial-type genome and gene expression machinery. The chloroplast genome encodes many of the core components of the photosynthetic apparatus in the thylakoid membranes. To avoid photooxidative damage and production of harmful reactive oxygen species (ROS) by incompletely assembled thylakoid protein complexes, chloroplast gene expression must be tightly regulated and co-ordinated with gene expression in the nucleus. Little is known about the control of chloroplast gene expression at the genome-wide level in response to internal rhythms and external cues. To obtain a comprehensive picture of organelle transcript levels in the unicellular model alga Chlamydomonas reinhardtii in diurnal conditions, a qRT-PCR platform was developed and used to quantify 68 chloroplast, 21 mitochondrial as well as 71 nuclear transcripts in cells grown in highly controlled 12 h light/12 h dark cycles. Interestingly, in anticipation of dusk, chloroplast transcripts from genes involved in transcription reached peak levels first, followed by transcripts from genes involved in translation, and finally photosynthesis gene transcripts. This pattern matches perfectly the theoretical demands of a cell “waking up” from the night. A similar trend was observed in the nuclear transcripts. These results suggest a striking internal logic in the expression of the chloroplast genome and a previously unappreciated complexity in the regulation of chloroplast genes.

Thermal human biometeorological conditions and subjective thermal sensation in pedestrian streets in Chengdu, China.

The outdoor thermal environment of a public space is highly relevant to the thermal perception of individuals, thereby affecting the use of space. This study aims to connect thermal human biometeorological conditions and subjective thermal sensation in hot and humid regions and to find its influence on street use. We performed a thermal comfort survey at three locations in a pedestrian precinct of Chengdu, China. Meteorological measurements and questionnaire surveys were used to assess the thermal sensation of respondents. The number of people visiting the streets was counted. Meanwhile, mean radiant temperature (T mrt) and the physiological equivalent temperature (PET) index were used to evaluate the thermal environment. Analytical results reveal that weather and street design drive the trend of diurnal micrometeorological conditions of the street. With the same geometry and orientation, a street with no trees had wider ranges of meteorological parameters and a longer period of discomfort. The neutral temperature in Chengdu (24.4°C PET) is similar to that in Taiwan, demonstrating substantial human tolerance to hot conditions in hot and humid regions. Visitors' thermal sensation votes showed the strongest positive relationships with air temperature. Overall comfort level was strongly related to every corresponding meteorological parameter, indicating the complexity of people's comfort in outdoor environments. In major alleys with multiple functions, the number of people in the street decreased as thermal indices increased; T mrt and PET had significant negative correlations with the number of people. This study aids in understanding pedestrian street use in hot and humid regions.

Exaggerated root respiration accounts for growth retardation in a starchless mutant of Arabidopsis thaliana

The knock-out mutation of plastidial phosphoglucomutase (pgm) causes a starchless phenotype in Arabidopsis thaliana, and results in a severe growth reduction of plants cultivated under diurnal conditions. It has been speculated that high soluble sugar levels accumulating during the light phase in leaf mesophyll might cause a reduction of photosynthetic activity or that shortage of reduced carbon during the night is the reason for the slow biomass gain of pgm. Separate simultaneous measurements of leaf net photosynthesis and root respiration demonstrate that photosynthetic activity per unit fresh weight is not reduced in pgm, whereas root respiration is strongly elevated. Comparison with a mutant defective in the dominating vacuolar invertase (AtβFruct4) revealed that high sucrose concentration in the cytosol, but not in the vacuole, of leaf cells is responsible for elevated assimilate transport to the root. Increased sugar supply to the root, as observed in pgm mutants, forces substantial respiratory losses. Because root respiration accounts for 80% of total plant respiration under long-day conditions, this gives rise to retarded biomass formation. In contrast, reduced vacuolar invertase activity leads to reduced net photosynthesis in the shoot and lowered root respiration, and affords an increased root/shoot ratio. The results demonstrate that roots have very limited capacity for carbon storage but exert rigid control of supply for their maintenance metabolism.

Fluctuation of Dof1/Dof2 expression ratio under the influence of varying nitrogen and light conditions: involvement in differential regulation of nitrogen metabolism in two genotypes of finger millet (Eleusine coracana L.)

In order to gain insights into the mechanism of high nitrogen use efficiency (NUE) of finger millet (FM) the role of Dof2 transcription factor (TF), which is a repressor of genes involved in C/N metabolism was investigated. The partial cDNA fragment of EcDof2 (912-bp; GenBank acc. no. KF261117) was isolated and characterized from finger millet (FM) that showed 63% and 58% homology with Dof2 of Zea mays at nucleotide and protein level, respectively. Its expression studies were carried out along with the activator EcDof1 in two genotypes (GE3885, high protein genotype (HPG); GE1437, low protein genotype (LPG)) of FM differing in grain protein contents (13.8% and 6.2%) showed that EcDof2 is expressed in both shoot and root tissues with significantly (p≤0.05) higher expression in the roots. The diurnal expression of both EcDof1 and EcDof2 in shoots was differential having different time of peak expression indicating a differential response to diurnal condition. Under continuous dark conditions, expression of EcDof1 and EcDof2 oscillated in both the genotypes whereas on illumination, the fold expression of EcDof1 was higher as compared to EcDof2. Under increasing nitrate concentration, EcDof2 expression increases in roots and shoots of LPG while it remains unchanged in HPG. However, the EcDof1 expression was found to increase in both genotypes. Further, time kinetics studies under single nitrate concentration revealed that EcDof2 was repressed in the roots of both genotypes whereas EcDof1 oscillated with time. The EcDof1/EcDof2 ratio measured showed differential response under different light and nitrogen conditions. It was higher in the roots of HPG indicating higher activation of genes involved in N uptake and assimilation resulting in high grain protein accumulation. The results indicate that both light and nitrogen concentration influence Dof1 and Dof2 expression and suggests a complex pattern of regulation of genes influenced by these plant specific TFs. In nutshell, the Dof1/Dof2 ratio can serve as an index for measuring the N responsiveness and NUE of crops and can be further validated by Dof2 knock down approach.

Changes in fluxes of heat, H2O, and CO2 caused by a large wind farm

The Crop Wind-Energy Experiment (CWEX) provides a platform to investigate the effect of wind turbines and large wind farms on surface fluxes of momentum, heat, moisture, and carbon dioxide (CO2). In 2010 and 2011, eddy covariance flux stations were installed between two lines of turbines at the southwest edge of a large Iowa wind farm from late June to early September. We report changes in fluxes of momentum, sensible heat, latent heat, and CO2 above a corn canopy after surface air had passed through a single line of turbines. In 2010, our flux stations were placed within a field with homogeneous land management practices (same tillage, cultivar, chemical treatments). We stratify the data according to wind direction, diurnal condition, and turbine operational status. Within these categories, the downwind–upwind flux differences quantify turbine influences at the crop surface. Flux differences were negligible in both westerly wind conditions and when the turbines were non operational. When the flow is perpendicular (southerly) or slightly oblique (southwesterly) to the row of turbines during the day, fluxes of CO2 and water (H2O) are enhanced by a factor of five in the lee of the turbines (from three to five turbine diameter distances downwind from the tower) as compared to a west wind. However, we observe a smaller CO2 flux increase of 30–40% for these same wind directions when the turbines are off. In the nighttime, there is strong statistical significance that turbine wakes enhance upward CO2 fluxes and entrain sensible heat toward the crop. The direction of the scalar flux perturbation seems closely associated to the differences in canopy friction velocity. Spectra and co-spectra of momentum components and co-spectra of heat also demonstrate nighttime influence of the wind turbine turbulence at the downwind station.