Summary In this study, the differences and diagnostic importances of the pathological and immunohistochemical findings in avian encephalomyelitis were investigated comparatively in chicks and quails by inoculating van Roekel strain (reference strain) via intracerebral and intramuscular routes. Histopathologically, nonpurulent encephalomyelitis characterized with infiltration of perivascular mononuclear cells and gliosis was described in both species. Neuronal lesion in the chicks consisted of central chromatolysis and neuronal shrinkage (neuronal pyknosis), whereas in quails it was composed of only neuronal shrinkage. Lymphoid aggregates and/or infiltration of mononuclear cells were observed in the proventriculus, gizzard, intestines, liver, pancreas, kidneys, myocardium, lungs, spleen and eyes. However, these lesions in quails were restricted only in the proventriculus, intestines, myocardium and eyes. In the immunofluorescein examination, viral antigen was found especially in neurons of the midbrain, cerebral hemispheres, cerebellum, and occasionally in medulla oblongata and medulla spinalis in both species. Viral antigen in the brain and spinal cord samples of the chicks decreased gradually by increasing inflammatory reaction. Viral antigen in both species was continously detected in the proventriculus, gizzard, intestines, myocardium, pancreas, spleen, liver, kidneys, lungs and eyes..