Fishes typically occupy a species-specific temperature range, with their occupied depth being related to the lake’s temperature profile. When a fish’s preferred temperature range coincides with the thermocline, the location of their preferred thermal habitat is influenced by the rise and fall of internal waves, leading to possible changes in fish depth. These internal waves are common in large, stratified lakes, yet we do not know how they affect the spatial distribution and behavior of freshwater fishes. We conducted nighttime hydroacoustic surveys in a large, deep embayment of a large thermally stratified lake to observe whether pelagic fish respond to vertical oscillations of the thermocline caused by internal waves. The coldwater pelagic fish in our study (primarily cisco, Coregonus artedi) typically occupied a narrow vertical band approximately 5–8 m thick and temperatures between 10.8 ± 0.8–13.6 ± 1.6 °C (fishes sized 106–500 mm), just below the thermocline (centered around 15–17 °C). Importantly, the upper bound of fish depth varied in response to vertical thermocline movements associated with internal waves, suggesting fish respond to changes in their physical environment on timescales commensurate with basin-scale internal wave periods (hours to days), to remain within their preferred thermal habitat. Dissolved-oxygen levels were typically above avoidance thresholds of these fish, thus not likely exerting a strong influence on fish location. Our findings emphasize the need to account for internal waves when designing hydroacoustic and netting surveys, as thermocline movements can influence where fish are located.
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