In order to improve understanding of the stratigraphy of the Lake Turkana Basin, one of the important sites in the evolution of early man, this study evaluates the usefulness of organic biological marker compounds, n-alkanes and fatty acids, for correlation of isolated sedimentary strata.Eighty-five paleosol samples were collected from well-defined sedimentary horizons in two regions (Area 103 and Area 130) of the Koobi Fora area of Lake Turkana. Results indicate that most of the organic matter present was derived from terrestrial plant waxes. In sediments where extensive diagenesis has occurred, microbial input of organic matter may have been substantial. Algae were either not an important source of organic matter, or their marker compounds have been removed or altered by degradative processes.The fate of the original paleosol organic matter has been governed to some extent by weathering processes, especially in Area 130. Weathering decreased the amount of extractable lipids, particularly fatty acids and the low molecular weight alkanes (C17-C20); produced or retained relatively large amounts of alkanes greater than C21 within a unimodal distribution; and lowered CPI values. Consequently, stratigraphic correlation by unique alkane and fatty acid distributions has been confined to short distances (many meters).Both n-alkanes and fatty acids have been retained better by association with clay minerals than by sand matrices. The alkane distribution of sandstones differs from that of clay organics in having a narrower carbon chain length distribution and lower CPI values. In Area 103, where weathering was less severe, compositional variations with stratigraphic position indicate that lipid material has been retained within each of the facies examined.