Dissolved Organic Matter Mineralization Research Articles

Peatland vascular plant functional types affect dissolved organic matter chemistry

Northern peatlands are large repositories of carbon. Peatland vascular plant community composition has been functionally associated to a set of biogeochemical processes such as carbon cycling. Yet, we do not fully understand to what extent vascular plant functional types (PFTs) affect the quality of dissolved organic matter, and if there is any feedback on soil microbial activity. Using a longer–term plant removal experiment in a boreo–nemoral peatland in Southern Sweden, we relate the dominance of different vascular plant functional types (i.e. ericoids and graminoids) to the chemistry of the dissolved organic matter (DOM) and microbial enzymatic activities (fluorescein diacetate hydrolysis, FDA). Our results show that PFTs modifies the composition of DOM moieties, with a decrease of low molecular weight organic compounds after vascular plant removal. The decrease of enzymatic activity by up to 68 % in the plant removal plots suggests a reduction in DOM mineralization in the absence of vascular plants. Our results show that plant–derived low molecular organic compounds enhance peatland microbial activity, and suggest that an increase of vascular plant cover in response to climate change can potentially destabilize the OM in peatlands, leading to increased carbon losses.

Ammonium and glucose amendments stimulate dissolved organic matter mineralization in a Lake Superior tributary

Dissolved organic matter (DOM) plays an integral role in the biogeochemical cycles of aquatic ecosystems, and rates of DOM mineralization can be affected by nitrogen (N) and carbon (C) availability in the water column. To determine if DOM mineralization rates were limited by availability of N or C in a small tributary of Lake Superior, we conducted 28-day laboratory experiments where we amended stream water with a microbial inoculum and ammonium (NH4+) and/or glucose in a full factorial design. We repeated these experiments on four dates (July, October, January, April) because we expected nutrient limitation to vary with temporal changes in sources of DOM and nutrients. DOM mineralization rates were stimulated by additions of NH4+ in three of the four experiments and by glucose in all four experiments, even in October when carbon inputs to the stream via leaf litter were greatest. Mean biodegradable dissolved organic C was greater in July (40.6% ± 5.4) than October (10.2% ± 0.9) or January (9.6% ± 10.9) but did not differ from April (18.4% ± 0.7), which suggests the composition of DOM varies temporally. Our results suggest that biodegradable DOM is exported from this forested stream to nearshore Lake Superior throughout the year, but DOM mineralization can be stimulated by additions of both carbon and nitrogen. Nutrient enrichment may alter in-stream processing of DOM in small forested tributary streams, in turn reducing export of biodegradable DOM to nearshore regions of the Great Lakes where it fuels microbial production.

Fate of the Amazon River dissolved organic matter in the tropical Atlantic Ocean

AbstractConstraining the fate of dissolved organic matter (DOM) delivered by rivers is a key to understand the global carbon cycle, since DOM mineralization directly influences air‐sea CO2 exchange and multiple biogeochemical processes. The Amazon River exports large amounts of DOM, and yet the fate of this material in the ocean remains unclear. Here we investigate the molecular composition and transformations of DOM in the Amazon River‐ocean continuum using ultrahigh resolution mass spectrometry and geochemical and biological tracers. We show that there is a strong gradient in source and composition of DOM along the continuum, and that dilution of riverine DOM in the ocean is the dominant pattern of variability in the system. Alterations in DOM composition are observed in the plume associated with the addition of new organic compounds by phytoplankton and with bacterial and photochemical transformations. The relative importance of each of these drivers varies spatially and is modulated by seasonal variations in river discharge and ocean circulation. We further show that a large fraction (50–76%) of the Amazon River DOM is surprisingly stable in the coastal ocean. This results in a globally significant river plume with a strong terrigenous signature and in substantial export of terrestrially derived organic carbon from the continental margin, where it can be entrained in the large‐scale circulation and potentially contribute to the long‐term storage of terrigenous production and to the recalcitrant carbon pool found in the deep ocean.

Bioavailability of dissolved organic carbon across a hillslope chronosequence in the Kuparuk River region, Alaska

Dissolved organic matter (DOM) represents an important component of carbon and nutrient cycling in arctic ecosystems. In northern Alaska, DOM production and microbial activity differ among landscapes with varied glaciation histories with lower rates on younger landscapes. In addition, within the region, soil DOM concentrations vary at the scale of hillslope toposequences, with higher concentrations in upslope than streamside positions. However, it is unknown whether variation in DOM production quality among and within landscapes linked to patterns in DOM quality. To answer this question, we conducted a study of DOM biodegradability within and among hillslopes of different landscape age. We examined rates of DOM decomposition and several indices of the quality of water-extracted DOM collected from soils in the summer. A variety of methods indicated that DOM quality generally was consistent across hillslope positions and among landscape ages. For example, DOM fluorescence index, an index of quality for chromophoric DOM, did not vary significantly across all hillslope positions or landscape ages. There were no significant differences among landscape ages or hillslope positions in DOM specific UV absorbance, in rates of DOM mineralization, or in DOM decomposition, indicating that DOM quality was consistent regardless of its source or position along hillslope flow paths. This suggests that despite many potential sources of variation within and among arctic hillslopes linked to differences in vegetation, hydrology, microclimate, and microbial activity, there is little variation in growing-season soil DOM quality. Microbial processing of DOM within arctic hillslopes may lead to a convergence in growing season DOM quality resulting in little spatial variation. Approximately 10–20% of the growing season DOM is labile in tundra soils, slightly higher that the proportion that is labile in arctic rivers during the summer.

Fate of 14C-labeled dissolved organic matter in paddy and upland soils in responding to moisture

Soil organic matter (SOM) content in paddy soils is higher than that in upland soils in tropical and subtropical China. The dissolved organic matter (DOM) concentration, however, is lower in paddy soils. We hypothesize that soil moisture strongly controls the fate of DOM, and thereby leads to differences between the two agricultural soils under contrasting management regimens.A 100-day incubation experiment was conducted to trace the fate and biodegradability of DOM in paddy and upland soils under three moisture levels: 45%, 75%, and 105% of the water holding capacity (WHC). 14C labeled DOM, extracted from the 14C labeled rice plant material, was incubated in paddy and upland soils, and the mineralization to 14CO2 and incorporation into microbial biomass were analyzed. Labile and refractory components of the initial 14C labeled DOM and their respective half-lives were calculated by a double exponential model.During incubation, the mineralization of the initial 14C labeled DOM in the paddy soils was more affected by moisture than in the upland soils. The amount of 14C incorporated into the microbial biomass (2.4–11.0% of the initial DOM-14C activity) was less affected by moisture in the paddy soils than in the upland soils. At any of the moisture levels, 1) the mineralization of DOM to 14CO2 within 100days was 1.2–2.1-fold higher in the paddy soils (41.9–60.0% of the initial DOM-14C activity) than in the upland soils (28.7–35.7%), 2) 14C activity remaining in solution was significantly lower in the paddy soils than in the upland soils, and 3) 14C activity remaining in the same agricultural soil solution was not significantly different among the three moisture levels after 20days. Therefore, moisture strongly controls DOM fate, but moisture was not the key factor in determining the lower DOM in the paddy soils than in the upland soils.The UV absorbance of DOM at 280nm indicates less aromaticity of DOM from the paddy soils than from the upland soils. At any of the moisture levels, much more labile DOM was found in paddy soils (34.3–49.2% of the initial 14C labeled DOM) compared with that in upland soils (19.4–23.9%). This demonstrates that the lower DOM content in the paddy soil compared with that in the upland soil is probably determined by the less complex components and structure of the DOM.

Benthic fluxes of dissolved organic nitrogen in the lower St. Lawrence estuary and implications for selective organic matter degradation

Abstract. The distribution of dissolved organic nitrogen (DON) and carbon (DOC) in sediment porewaters was determined at nine locations along the St. Lawrence estuary and in the gulf of St. Lawrence. In a previous manuscript (Alkhatib et al., 2012a), we have shown that this study area is characterized by gradients in the sedimentary particulate organic matter (POM) reactivity, bottom water oxygen concentrations, and benthic respiration rates. Based on the porewater profiles, we estimated the benthic diffusive fluxes of DON and DOC in the same area. Our results show that DON fluxed out of the sediments at significant rates (110 to 430 μmol m−2 d−1). DON fluxes were positively correlated with sedimentary POM reactivity and varied inversely with sediment oxygen exposure time (OET), suggesting direct links between POM quality, aerobic remineralization and the release of DON to the water column. DON fluxes were on the order of 30 to 64% of the total benthic inorganic fixed N loss due to denitrification, and often exceeded the diffusive nitrate fluxes into the sediments. Hence they represented a large fraction of the total benthic N exchange, a result that is particularly important in light of the fact that DON fluxes are usually not accounted for in estuarine and coastal zone nutrient budgets. In contrast to DON, DOC fluxes out of the sediments did not show any significant spatial variation along the Laurentian Channel (LC) between the estuary and the gulf (2100 ± 100 μmol m−2 d−1). The molar C / N ratio of dissolved organic matter (DOM) in porewater and the overlying bottom water varied significantly along the transect, with lowest C / N in the lower estuary (5–6) and highest C / N (> 10) in the gulf. Large differences between the C / N ratios of porewater DOM and POM are mainly attributed to a combination of selective POM hydrolysis and elemental fractionation during subsequent DOM mineralization, but selective adsorption of DOM to mineral phases could not be excluded as a potential C / N fractionating process. The extent of this C- versus N- element partitioning seems to be linked to POM reactivity and redox conditions in the sediment porewaters. Our results thus highlight the variable effects selective organic matter (OM) preservation can have on bulk sedimentary C / N ratios, decoupling the primary source C / N signatures from those in sedimentary paleoenvironmental archives. Our study further underscores that the role of estuarine sediments as efficient sinks of bioavailable nitrogen is strongly influenced by the release of DON during early diagenetic reactions, and that DON fluxes from continental margin sediments represent an important internal source of N to the ocean.

Dissolved organic matter photolysis in Canadian arctic thaw ponds

The abundant thaw lakes and ponds in the circumarctic receive a new pool of organic carbon as permafrost peat soils degrade, which can be exposed to significant irradiance that potentially increases as climate warms and ice cover shortens. Exposure to sunlight is known to accelerate the transformation of dissolved organic matter (DOM) into molecules that can be more readily used by microbes. We sampled the water from two common classes of ponds found in the ice-wedge system of continuous permafrost regions of Canada, polygonal and runnel ponds, and followed the transformation of DOM over 12 days by looking at dissolved organic carbon (DOC) concentration and DOM absorption and fluorescence properties. The results indicate a relatively fast decay of color (3.4 and 1.6% loss d−1 of absorption at 320 nm for the polygonal and runnel pond, respectively) and fluorescence (6.1 and 8.3% loss d−1 of total fluorescent components, respectively) at the pond surface, faster in the case of humic-like components, but insignificant losses of DOC over the observed period. This result indicates that direct DOM mineralization (photochemical production of CO2) is apparently minor in thaw ponds compared to the photochemical transformation of DOM into less chromophoric and likely more labile molecules with a greater potential for microbial mineralization. Therefore, DOM photolysis in arctic thaw ponds can be considered as a catalytic mechanism, accelerating the microbial turnover of mobilized organic matter from thawing permafrost and the production of greenhouse gases, especially in the most shallow ponds. Under a warming climate, this mechanism will intensify as summers lengthen.

Biogeochemical processes in the groundwater discharge zone of urban streams

The influence of biogeochemical processes on nitrogen and organic matter transformation and transport was investigated for two urban streams receiving groundwater discharge during the dry summer baseflow period. A multiple lines of evidence approach involving catchment-, and stream reach-scale investigations were undertaken to describe the factors that influence pore water biogeochemical processes. At the catchment-scale gaining stream reaches were identified from water table mapping and groundwater discharge estimated to be between 0.1 and 0.8 m3 m−2 d−1 from baseflow analysis. Sediment temperature profiles also suggested that the high groundwater discharge limited stream water infiltration into the sediments. At the stream reach-scale, dissolved organic carbon (DOC) and dissolved organic nitrogen (DON) concentrations were higher in stream water than in groundwater. However, DOC and DON concentrations were greatest in sediment pore water. This suggests that biodegradation of sediment organic matter contributes dissolved organic matter (DOM) to the streams along with that delivered with groundwater flow. Pore water ammonium (NH4 +) was closely associated with areas of high pore water DOM concentrations and evidence of sulfate (SO4 2−) reduction (low concentration and SO4:Cl ratio). This indicates that anoxic DOM mineralization was occurring associated with SO4 2− reduction. However the distribution of anoxic mineralization was limited to the center of the streambed, and was not constrained by the distribution of sediment organic matter which was higher along the banks. Lower sediment temperatures measured along the banks compared to the center suggests, at least qualitatively, that groundwater discharge is higher along the banks. Based on this evidence anoxic mineralization is influenced by groundwater residence time, and is only measurable along the center of the stream where groundwater flux rates are lower. This study therefore shows that the distribution of biogeochemical processes in stream sediments, such as anoxic mineralization, is strongly influenced by both the biogeochemical conditions and pore water residence time.

Modeling the dynamics and export of dissolved organic matter in the Northeastern U.S. continental shelf

Continental shelves are believed to play a major role in carbon cycling due to their high productivity. To improve our understanding of carbon dynamics on continental margins, a dissolved organic matter (DOM) model was developed and imbedded within an existing coupled ocean circulation-biogeochemical model of the U.S. East coast. A model simulation with the DOM module was compared with the reference model (without the DOM module) to illustrate the role of DOM dynamics in coastal ocean biogeochemical cycling. Model results reveal that the progressive release of dissolved organic nitrogen (DON) in the ocean’s upper layer during summer increases the regenerated primary production by 30–300%, which, in turn, enhances the dissolved organic carbon (DOC) production mainly from phytoplankton exudation in the upper layer and solubilization of particulate organic matter (POM) deeper in the water column. This analysis suggests that DOM is a necessary component for representing ecosystem functioning and organic fluxes in models because DOM (1) is a major organic pool directly related to primary production, (2) decouples partially the carbon and nitrogen cycles (through carbon excess uptake, POM solubilization and DOM mineralization) and (3) is intimately linked to the residence time of water masses for its distribution and export. The seasonally produced DOC on the shelf can be exported to the open ocean by horizontal transport at comparable rates (1–2 mol C m −2 yr −1) to particulate organic carbon burial in the southern U.S. Mid-Atlantic Bight (MAB).

NUTRIENT REGULATION OF ORGANIC MATTER DECOMPOSITION IN A TROPICAL RAIN FOREST

Terrestrial biosphere-atmosphere CO2 exchange is dominated by tropical forests, so understanding how nutrient availability affects carbon (C) decomposition in these ecosystems is central to predicting the global C cycle's response to environmental change. In tropical rain forests, phosphorus (P) limitation of primary production and decomposition is believed to be widespread, but direct evidence is rare. We assessed the effects of nitrogen (N) and P fertilization on litter-layer organic matter decomposition in two neighboring tropical rain forests in southwest Costa Rica that are similar in most ways, but that differ in soil P availability. The sites contain 100-200 tree species per hectare and between species foliar nutrient content is variable. To control for this heterogeneity, we decomposed leaves collected from a widespread neotropical species, Brosimum utile. Mass loss during decomposition was rapid in both forests, with B. utile leaves losing >80% of their initial mass in <300 days. High organic matter solubility throughout decomposition combined with high rainfall support a model of litter-layer decomposition in these rain forests in which rapid mass loss in the litter layer is dominated by leaching of dissolved organic matter (DOM) rather than direct CO2 mineralization. While P fertilization did not significantly affect mass loss in the litter layer, it did stimulate P immobilization in decomposing material, leading to increased P content and a lower C:P ratio in soluble DOM. In turn, increased P content of leached DOM stimulated significant increases in microbial mineralization of DOM in P-fertilized soil. These results show that, while nutrients may not affect mass loss during decomposition in nutrient-poor, wet ecosystems, they may ultimately regulate CO2 losses (and hence C storage) by limiting microbial mineralization of DOM leached from the litter layer to soil.

Role of photoreactions in the formation of biologically labile compounds from dissolved organic matter

Dissolved organic matter (DOM) can be degraded by sunlight into a variety of photoproducts that stimulate the growth and activity of microorganisms in aquatic environments. All biologically labile photoproducts identified to date fall into one of four categories: (1) low‐molecular‐weight (MW) organic compounds (carbonyl compounds with MW of &lt;200); (2) carbon gases (primarily CO); (3) unidentified bleached organic matter; and (4) nitrogen‐ and phosphorus‐rich compounds (including NH4+ and PO43−). A number of laboratory studies using bacterial bioassay approaches have shown that the photochemical breakdown of DOM can stimulate biomass production or activity by 1.5‐ to 6‐fold. Results of photochemical studies, extrapolated to estimate formation rates of biologically available photoproducts from DOM in surface waters, also predict important biological roles for these compounds. In a continental shelf system, for example, full exposure of surface seawater to sunlight for one summer day can produce DOM photodegradation products equivalent to &gt;20% of the bacterial carbon demand. Likewise, 30% of the bacterial nitrogen demand can be met by photodegradation of the nitrogen components of DOM, a process likely to be of particular importance in nitrogen‐limited systems. When considered on a depth‐integrated basis around the globe, at least 1.0 × 1015 g C and 0.15 × 1015 g N are estimated to be available annually for utilization by planktonic microorganisms through the conversion of light‐absorbing fractions of DOM to more biologically labile compounds. By comparison, direct photochemical mineralization of DOM is estimated to convert 12−16 × 1015 g C to CO2 annually.