In this paper, we present a voxel-based phantom of Medaka fish that can be used to assess the internal radiation doses that would be absorbed by different organs of this fish species if exposed to radioactive wastewater released into the ocean. The geometric model for fish was generated based on available Wavefront Object files for smooth-bodied Medaka fish organs, whereas due to the lack of Medaka fish material specification, the material model was constructed using material data appropriate to ICRP 110 adult male voxel-based phantom. Absorbed Fractions (AFs) and Specific Absorbed Fractions (SAFs) were calculated for eight organs of major interest as sources and for each organ as target at a set of discrete photon, electron, alpha and neutron energies. To validate the present model the calculated AFs in the studied organs were compared to ones obtained in similar organs in a voxel-based phantom of another teleost fish species called Limanda limanda. The results presented are consistent with the reference dosimetric data. We concluded that the Medaka model can be used in radioecology research to improve marine radiation protection.