AbstractA newly Integrated Hydrological Modelling System (IHMS) has been developed to study the impact of changes in climate, land use and water management on groundwater and seawater intrusion (SWI) into coastal areas. The system represents the combination of three models, which can, if required, be run separately. It has been designed to assess the combined impact of climate, land use and groundwater abstraction changes on river, drainage and groundwater flows, groundwater levels and, where appropriate, SWI. The approach is interdisciplinary and reflects an integrated water management approach. The system comprises three packages: the Distributed Catchment Scale Model (DiCaSM), MODFLOW (96 and 2000) and SWI models. In addition to estimating all water balance components, DiCaSM, produces the recharge data that are used as input to the groundwater flow model of the US Geological Survey, MODFLOW. The latter subsequently generates the head distribution and groundwater flows that are used as input to the SWI model, SWI. Thus, any changes in land use, rainfall, water management, abstraction, etc. at the surface are first handled by DiCaSM, then by MODFLOW and finally by the SWI. The three models operate at different spatial and temporal scales and a facility (interface utilities between models) to aggregate/disaggregate input/output data to meet a desired spatial and temporal scale was developed allowing smooth and easy communication between the three models. As MODFLOW and SWI are published and in the public domain, this article focuses on DiCaSM, the newly developed unsaturated zone DiCaSM and equally important the interfacing utilities between the three models. DiCaSM simulates a number of hydrological processes: rainfall interception, evapotranspiration, surface runoff, infiltration, soil water movement in the root zone, plant water uptake, crop growth, stream flow and groundwater recharge. Input requirements include distributed data sets of rainfall, land use, soil types and digital terrain; climate data input can be either distributed or non‐distributed. The model produces distributed and time series output of all water balance components including potential evapotranspiration, actual evapotranspiration, rainfall interception, infiltration, plant water uptake, transpiration, soil water content, soil moisture (SM) deficit, groundwater recharge rate, stream flow and surface runoff. This article focuses on details of the hydrological processes and the various equations used in DiCaSM, as well as the nature of the interface to the MODFLOW and SWI models. Furthermore, the results of preliminary tests of DiCaSM are reported; these include tests related to the ability of the model to predict the SM content of surface and subsurface soil layers, as well as groundwater levels. The latter demonstrates how the groundwater recharge calculated from DiCaSM can be used as input into the groundwater model MODFLOW using aggregation and disaggregation algorithms (built into the interface utility). SWI has also been run successfully with hypothetical examples and was able to reproduce the results of some of the original examples of Bakker and Schaars (2005). In the subsequent articles, the results of applications to different catchments will be reported. Copyright © 2010 John Wiley & Sons, Ltd.