Direct Optical Methods Research Articles

Surface Plasmon Resonance Imaging (SPRi) and Photonic Integrated Circuits (PIC) for COVID-19 Severity Monitoring

Direct optical detection methods such as surface plasmon resonance imaging (SPRi) and photonic-integrated-circuits (PIC)-based biosensors provide a fast label-free detection of COVID-19 antibodies in real-time. Each technology, i.e., SPRi and PIC, has advantages and disadvantages in terms of throughput, miniaturization, multiplexing, system integration, and cost-effective mass production. However, both technologies share similarities in terms of sensing mechanism and both can be used as high-content diagnostics at or near to point of care, where the analyte is not just quantified but comprehensively characterized. This is significant because recent results suggest that not only the antibody concentration of the three isotypes IgM, IgG, and IgA but also the strength of binding (affinity) gives an indication of potential COVID-19 severity. COVID-19 patients with high titers of low affinity antibodies are associated with disease severity. In this perspective, we provide some insights into how SPR and PIC technologies can be effectively combined and complementarily used for a comprehensive COVID-19 severity monitoring. This opens a route toward an immediate therapy decision to provide patients a treatment in an early stage of the infection, which could drastically lowers the risk of a severe disease course.

A Method for Measuring Contact Points in Human-Object Interaction Utilizing Infrared Cameras.

This article presents a novel method for measuring contact points in human–object interaction. Research in multiple prehension-related fields, e.g., action planning, affordance, motor function, ergonomics, and robotic grasping, benefits from accurate and precise measurements of contact points between a subject’s hands and objects. During interaction, the subject’s hands occlude the contact points, which poses a major challenge for direct optical measurement methods. Our method solves the occlusion problem by exploiting thermal energy transfer from the subject’s hand to the object surface during interaction. After the interaction, we measure the heat emitted by the object surface with four high-resolution infrared cameras surrounding the object. A computer-vision algorithm detects the areas in the infrared images where the subject’s fingers have touched the object. A structured light 3D scanner produces a point cloud of the scene, which enables the localization of the object in relation to the infrared cameras. We then use the localization result to project the detected contact points from the infrared camera images to the surface of the 3D model of the object. Data collection with this method is fast, unobtrusive, contactless, markerless, and automated. The method enables accurate measurement of contact points in non-trivially complex objects. Furthermore, the method is extendable to measuring surface contact areas, or patches, instead of contact points. In this article, we present the method and sample grasp measurement results with publicly available objects.

Microsphere-assisted manipulation of a single Ag nanowire

Abstract Metal nanowires are promising building blocks for optoelectronic nanodevices, so their independent and precise manipulation is urgently needed. However, the direct optical manipulation methods are severely hampered due to the high absorption and scattering characteristics of the metal nanowires. Here, a microsphere-assisted indirect optical manipulation method is proposed, and precise manipulation of a single Ag nanowire is demonstrated in liquid. The microsphere is actuated to rotate to generate a microvortex by dynamic optical traps. Under the action of shear stress, the Ag nanowire within the microvortex can be controllably rotated and accurately orientated. By manipulating the position of the microsphere using a single optical trap, a precise positioning of the nanowire can be achieved under the action of pushing force. On this basis, the Ag nanowire-based structures were assembled. This indirect optical manipulation avoids the direct interaction between the light and the nanowires, which makes it independent of both the laser (power, wavelength) and the nanowire (material, size, and shape). Hence, the microsphere-assisted manipulation method is simple and general for independent and precise manipulation of a single nanowire, which is of great significance to the fabrication of optoelectronic nanodevices.

Wide-field direct ocular straylight meter.

The impact of the intraocular straylight (IOS) on the visual performance and retinal imaging is still a challenging topic. Direct optical methods to measure IOS avoid psychophysical approaches and interaction with the patient. In this work, we developed an optical instrument providing direct imaging measurement of IOS based on the double-pass technology. The system was tested in an artificial eye IOS model constructed with holographic diffusers and validated with theoretical simulations.

Direct Optical Research Methods in the Analytics of Phenol

The possibility of determining phenol in water by direct optical methods without the use of wet chemistry and concentration methods is considered. The bounds for determining the concentration of phenol in water from the absorption and luminescence spectra are estimated. As a reason limiting the use of the direct luminescent method for determining phenol, the influence of Raman effect of the solvent is considered, which becomes comparable with the luminescent signal even at phenol concentrations in water at a level of 10 μg/L, despite the fact that the sensitivity of the method is sufficient to determine concentrations that are 50 times less.

Development of an effective way to increase the biological activity of nicotinamide – a new strategy to protect against photoageing and skin neoplasia

The objective of this work is to demonstrate changes in properties and increase of biological activity of nicotinamide (NAM) substance for skin protectants activated by mechanical activation (MA). To assess the physical, chemical and biological properties of NAM were used biotesting by the Spirotox-method, direct and indirect optical methods (microscopy, laser diffraction), infrared spectroscopy, pH-metry. The results of the study showed an increase in biological activity, expressed in changes in the energy of activation of cell transition to the “dead cell” state on the example of biosensor Spirostomum ambiguum. Also we indicated an increase in the rate of the chemical process of dissolution of mechanoactivated molecular crystals of nicotinamide (NAM) expressed in the values of the first order rate constant. Mechanical activation at a high rate of NAM substance powder deformation has led to changes in physical, chemical and biological properties of the drug, which can be used in medicine to increase efficiency and reduce doses of pharmacotherapy.

Прямые оптические методы исследования в аналитике фенола

The study investigates the applicability of direct optical methods to measure phenol in water without the use of “wet chemistry” and concentration techniques. The detection limits are estimated for determining phenol concentration from absorption spectra and luminescence. Inelastic scattering (Raman effect) of the solvent is proposed as the mechanism that limits the use of direct luminescence analysis to measure phenol concentrations; the scattering becomes comparable to the luminescent signal at phenol concentration near 10 μg l-1, even though the sensitivity of the method is high enough to detect concentrations that are 50 times lower

Imaging of Optically Active Defects with Nanometer Resolution.

Point defects significantly influence the optical and electrical properties of solid-state materials due to their interactions with charge carriers, which reduce the band-to-band optical transition energy. There has been a demand for developing direct optical imaging methods that would allow in situ characterization of individual defects with nanometer resolution. Here, we demonstrate the localization and quantitative counting of individual optically active defects in monolayer hexagonal boron nitride using single molecule localization microscopy. By exploiting the blinking behavior of defect emitters to temporally isolate multiple emitters within one diffraction limited region, we could resolve two defect emitters with a point-to-point distance down to ten nanometers. The results and conclusion presented in this work add unprecedented dimensions toward future applications of defects in quantum information processing and biological imaging.

Application of direct optical heterodyning methods for studying the processes of chondrite targets destruction by laser radiation

We have represented a system description used to study of the kinematic parameters of processes of destruction of chondrites under the action of intense shock waves. Interferometric method of measuring speed PDV was the basis for a compact, easy-to-use device intended for the analysis products of target destruction. Using the Fourier transform method of analysis, the dynamic rates of expansion for chondrite targets in interaction with high-power laser radiation and the dependence of the shock wave velocity on the thickness of the target were obtained.

Extremely Slow Spontaneous Electron Trapping in Photodoped n-Type CdSe Nanocrystals.

The trapping dynamics of conduction-band electrons in colloidal degenerately doped n-CdSe nanocrystals prepared by photochemical reduction (photodoping) were measured by direct optical methods. The nanocrystals show spontaneous electron trapping with distributed kinetics that extend to remarkably long timescales. Shifts in nanocrystal band-edge potentials caused by quantum confinement and surface ion stoichiometry were also measured by spectroelectrochemical techniques, and their relationship to the slow electron trapping is discussed. The very long electron-trapping timescales observed in these measurements are more consistent with atomic rearrangement than with fundamental electron-transfer processes. Such slow and broadly distributed electron-trapping dynamics are reminiscent of the well-known distributed dynamics of nanocrystal photoluminescence blinking, and potential relationships between the two phenomena are discussed.

Long-term response to thinning in a beech (<i>Fagus sylvatica</i> L.) coppice stand under conversion to high forest in Central Italy

European beech (L.) forests have a long history of coppicing, but the majority of formerly managed coppices are currently under conversion to high forest. The long time required to achieve conversion requires a long-term perspective to fully understand the implication of the applied conversion practices. In this study, we showed results from a long-term (1992–2014) case-study comparing two management options (natural evolution andperiodic thinning) in a beech coppice in conversion to high forest. Leaf area index, litter production, radiation transmittance and growth efficiency taken as relevant stand descriptors, were estimated using both direct and indirect optical methods. Overall, results indicated that beech coppice showed positive and prompt responses to active conversion practices based on periodic medium-heavy thinning. A growth efficiency index showed that tree growth increased as the cutting intensity increased. Results from the case study supported the effectiveness of active conversion management from an economic (timber harvesting) and ecological (higher growth efficiency) point of view.Fagus sylvatica

Helioseismology in a bottle: modal acoustic velocimetry

Measurement of the differential rotation of the Sunʼs interior is one of the great achievements of helioseismology, providing important constraints for stellar physics. The technique relies on observing and analyzing rotationally-induced splittings of p-modes in the star. Here, we demonstrate the first use of the technique in a laboratory setting. We apply it in a spherical cavity with a spinning central core (spherical-Couette flow) to determine the mean azimuthal velocity of the air filling the cavity. We excite a number of acoustic resonances (analogous to p-modes in the Sun) using a speaker and record the response with an array of small microphones on the outer sphere. Many observed acoustic modes show rotationally-induced splittings, which allow us to perform an inversion to determine the airʼs azimuthal velocity as a function of both radius and latitude. We validate the method by comparing the velocity field obtained through inversion against the velocity profile measured with a calibrated hot film anemometer. This modal acoustic velocimetry technique has great potential for laboratory setups involving rotating fluids in axisymmetric cavities. It will be useful especially in liquid metals where direct optical methods are unsuitable and ultrasonic techniques very challenging at best.

Complete optical neurophysiology: toward optical stimulation and recording of neural tissue

Direct optical methods to stimulate and record neural activity provide artifact-free, noninvasive, and noncontact neurophysiological procedures. For stimulation, focused mid-infrared light alters membrane potential and activates individual neural processes. Simultaneous intrinsic scattered light parameters, including birefringence changes, can record neural activity with signals similar to potentiometric dyes. The simultaneous combination of optical stimulation and optical recording techniques provide the potential for powerful tools that may someday remove the need for invasive wires during electrophysiological recordings.

Computational rheooptics of liquid crystal polymers

A computational rheooptical model based on the integration of liquid crystal polymer flow equations and two well-known polarized light transmission methods is formulated and applied to the ubiquitous periodic banded textures observed in sheared lyotropic nematic polymers. The selected optical methods are the matrix-type Berreman method and the finite-difference time-domain (FDTD) direct numerical simulation method. The optical response of a single unit cell of the periodic banded texture of sheared lyotropic nematic polymers to polarized light propagation under cross-polars is analyzed and correlated to the shear-induced orientation field previously reported in Han and Rey [W.H. Han, A.D. Rey, Theory and simulation of optical banded textures of nematics polymer during shear flow, Macromolecules 28 (1995) 8401–8405]. The role of orientation gradients on the optical response is elucidated and shown to be source of lack of accuracy of the Berreman matrix method. The findings provide robust guidelines on the applicability and accuracy of matrix and direct numerical simulation optical methods. Computational rheooptics of liquid crystal polymers based on the FDTD method is an additional tool to understand flow-induced texture formation when used in the direct forward mode, and in quantitative assessments of rheological material properties when used in backward mode.

Detection of 100% of mutations in 124 individuals using a standard UV/Vis microplate reader: a novel concept for mutation scanning.

We report the development of a simple and inexpensive assay for the detection of DNA polymorphisms and mutations that is based on the modification of mismatched bases by potassium permanganate. Unlike the chemical cleavage of mismatch assay, which also exploits the reactivity of potassium permanganate to detect genomic variants, the assay we describe here does not require a cleavage manipulation and therefore does not require expensive or toxic chemicals or a separation step, as mismatches are detected using direct optical methods in a microplate format. Studies with individual deoxynucleotides demonstrated that the reactivity with potassium permanganate resulted in a specific colour change. Furthermore, studies with synthetic oligonucleotide heteroduplexes demonstrated that this colour change phenomenon could be applied to detect mismatched bases spectrophotometrically. A collection of plasmids carrying single point mutations in the mouse β-globin promoter region was used as a model system to develop a functional mutation detection assay. Finally, the assay was validated as 100% effective in detecting mismatches in a blinded manner using DNA from patients previously screened for mutations using established techniques, such as sequencing, SSCP and denaturing high-performance liquid chromatography (DHPLC) analysis in DNA fragments up to 300 bp in length.

Multiple reflectance interference spectroscopy measurements made in parallel for binding studies

Reflectometric interference spectroscopy (RIfS) for the direct optical detection of biomolecular interaction has gained increasing interest in recent years compared to fluorophore based assays. The method has been established in the last decade as a robust and simple optical tool to perform such binding studies taking advantage of low temperature dependence and its capability of time-resolved monitoring of binding processes. Therefore various single-channel setups are given in review. In addition, the capability of parallel measurements and miniaturisation is discussed. The different properties of the setups are presented and the theoretical background is outlined. Many applications are given for this method in comparison to other direct optical detection methods; concentrating on a number of applications that have not yet been published. The capability of using this method in the area of high throughput screening of libraries and the application to combinatorial chemistry is demonstrated.

Influence of the Surfaces on the Nucleation Process During the Cholesteric-Nematic Transition

The nucleation phenomenon in short pitch cholesteric liquid crystals (LC), taking place during the relaxation from the electric field-induced cholesteric-nematic (CN) transition, has been investigated for various boundary conditions. The dynamic hysteresis properties have been studied by direct optical methods. For the first time it is shown the strong evidence that the nucleation is not exceptionally a bulk phenomenon and the supporting solid surfaces may act as nucleation sites. It is confirmed also that the nucleation velocity is not a function of the type of molecular alignment at the liquid crystal/solid interface rather than it depends on the uniformity of the surface interactions with liquid crystal molecules. This result is of importance for time scale optimization in modern fast driving schemes for cholesteric LCDs.

Light transmission from a twisted nematic liquid crystal: accurate methods to measure the azimuthal anchoring energy.

In this paper, we analyze the light transmission from a twisted nematic liquid crystal (NLC) and we propose two accurate and very direct optical methods to measure the azimuthal anchoring energy. In both of them, a monochromatic beam of wavelength lambda with a polarization vector that rotates at an angular frequency omega impinges on a twisted nematic liquid crystal. The intensity of the transmitted beam is modulated at angular frequency 2omega with a phase shift beta, which is related to the surface azimuthal director angle phi(1) at the investigated interface. It is shown that there exists a special geometry where the simple adiabatic relation phi(1)=beta/2 is satisfied up to second order in the small perturbative parameter alpha=lambda/(2piDelta(n)xi), where Delta(n) is the anisotropy of the refractive indices of the NLC and xi is the twist distortion length. Furthermore, the small residual higher order correction terms can be greatly reduced by choosing a proper geometry for the experiment. With this choice, the range of validity of the adiabatic theory is greatly extended. The perturbative theoretical results are fully confirmed by numerical calculations. The azimuthal anchoring energy coefficient can be obtained by measuring phase shift beta versus the intensity of an applied magnetic field. These methods greatly improve the accuracy of the previous transmitted light techniques and also provide accurate measurements of strong azimuthal anchoring energies.

Surface-Modified Hysteresis of Short Pitch Cholesteric-Nematic Mixtures under Externally Applied Fields

Dynamic hysteresis behaviors are subjected to testing in short pitch cholesteric-nematic liquid crystal layers at the various boundary conditions. Modification of hysteresis properties near the field induced cholesteric-nematic transition was observed for the differently treated boundary layers and inspected by direct optical methods. It was found the interaction energy between liquid crystal (LC) and boundary layers plays rather essential role in nucleation process than director configuration at the interface and if this interaction energy is essential for tangential constrains, the nucleation occurs mainly at the surface interface and then permeate into the bulk gradually. The experimental results show an influence of surface factor even for a big ratio d/Po .

Analysis of bacterial function by multi-colour fluorescence flow cytometry and single cell sorting

With the increased awareness of the problems associated with the growth dependent analysis of bacterial populations, direct optical detection methods such as flow cytometry have enjoyed increased popularity over the last few years. Among the analyses discussed here are: (1) Bacterial discrimination from other particles on the basis of nucleic acid staining, using sample disaggregation to provide fast reliable enumeration while minimizing data artefacts due to post sampling growth; (2) Determination of basic cell functions such as reproductive ability, metabolic activity and membrane integrity, to characterise the physiological state or degree of viability of bacteria; and (3) The use of single cell sorting onto agar plates, microscope slides or into multi-well plates to correlate viability as determined by cell growth with fluorescent labelling techniques. Simultaneous staining with different fluorochromes provides an extremely powerful way to demonstrate culture heterogeneity, and also to understand the functional differences revealed by each stain in practical applications. Analysis of bacterial fermentations showed a considerable drop (20%) in membrane potential and integrity during the latter stages of small scale (5L), well mixed fed-batch fermentations. These changes, not found in either batch or continuous culture fermentations, are probably due to the severe, steadily increasing stress associated with glucose limitation during the fed-batch process, suggesting ‘on-line’ flow cytometry could improve process control. Heat injured cells can already show up to 4 log of differences in recovery in different pre-enrichment media, thus contributing to the problem of viable but non-culturable cells (VBNC’s). Cytometric cell sorting demonstrated decreasing recovery with increasing loss of membrane function. However, a new medium protecting the cells from intracellular and extracellular causes of oxidative stress improved recovery considerably. Actively respiring cells showed much higher recovery improvement than the other populations, demonstrating for the first time the contribution of oxidative respiration to intracellular causes of damage as a key part of the VBNC problem. Finally, absolute and relative frequencies of one species in a complex population were determined using immunofluorescent labelling in combination with the analysis of cell function. The detail and precision of multiparameter flow cytometric measurements of cell function at the single cell level now raise questions regarding the validity of classical, growth dependent viability assessment methods.