In the current decades, the increasing presence of metallic contaminants in water for human consumption has become a major public health concern. This concern is even more pronounced in rural areas such as in the Town Halls of Agbangnizoun and Za-Kpota where the majority of households use surface water, wells and tanks to satisfy their daily drinking water needs, without any prior treatment, due to the low level of access to drinking water supplied by the State. This study aims at assessing the levels of contamination of these resources in mercury (Hg), cadmium (Cd), lead (Pb) and arsenic (As). The mercury was determined using the cold vapor technique by the Direct Mercury Analyzer (DMA-80) while lead and cadmium were analyzed by molecular absorption spectrophotometry by the DR 3900. The Arsenic was extracted by distillation using the silver diethyldithiocarbamate method then measured by molecular spectrophotometry technique. The results show that surface waters contain great quantities of metals than well and cistern waters. Lead (220.97 ± 9.45 µg/L) and cadmium (20.13 ± 0.17 µg/L) in surface waters have levels above WHO guidelines and Bénin standards. On the other hand, there is no significant difference between the metal concentrations of well and cistern waters at the 5% threshold compared to the borehole water (witness sample). Significant correlations are established between toxic metals (Pb and Cd) and physical parameters (turbidity and suspended matters) at the threshold of 1 %. As for mercury (Hg) and arsenic (As), the concentrations are very lower than these of Cd and Pb and below the quantification limit of the device. These results confirm that the surface waters consumed by the populations of the Town Halls of Agbangnizoun and Za-Kpota do not respect drinking water standards.