Highly hydrophilic compounds, with multiple carboxylic, hydroxylic, or aminic groups, have been determined at ultratrace level (3–30 fmol injected) in aqueous solution by direct derivatization with 2,2,3,3,4,4,5,5-octafluoropentyl chloroformate, followed by n-hexane extraction and analysis by gas chromatography-electron capture negative ion mass spectrometry (GC-ECNI-MS). The products have high molecular weights, but also high volatility, making their elution from the GC column efficient. The derivatizing agent was synthesized from the corresponding alcohol and phosgene. The derivatization reaction is catalyzed by a pyridine solution of N,N-dicyclohexylcarbodiimide. At 200 °C ion-source temperature, most negative ion mass spectra showed only a weak or no molecular ion, but a controlled and interpretable fragmentation, allowing the derivatives to be easily monitored by high-mass ion chromatograms. Typical distinctive fragments are located in the m/z 500–800 mass range. Optimization of the operating conditions for the derivatization was performed. This was done in order to minimize number and intensity of peaks due to the hydrolysis of chloroformate in the total ion chromatogram. Calibration curves proved linear over two orders of magnitude concentration.