Dimeric Intermediates Research Articles

ChemInform Abstract: Oxidation of 3-Hydroxythiophenes (Thiophen-3(2H)-ones): An EPR Study of Monomeric and Dimeric Intermediates.

Hydrogen abstraction from thiophen-3(2H)-ones gives 3-oxothiophen-2-yl radicals which have been observed by EPR spectroscopy at temperatures below ambient. The structures, enthalpies of formation, and spin densities of these species have been investigated by semiempirical SCF MO methods. The radicals readily couple to give dimers which (except for 2-substituted 3-hydroxythiophenes) are susceptible to a second hydrogen abstraction step to give extensively delocalized dimeric radicals; EPR spectroscopy showed the 5,5′-disubstituted dimeric radicals to be significantly persistent even at higher temperatures. A mechanism for the oxidation of thiophen-3(2H)-ones by air and one-electron oxidants is proposed and justified.

Synthesis and biological activities of new di- and trimeric quinoline derivatives

The synthesis of non-peptidic helix mimetics based on a trimeric quinoline scaffold is described. The ability of these new compounds, as well as their synthetic dimeric intermediates, to bind to various members of the Bcl-2 protein anti-apoptotic group is also evaluated. The most interesting derivative of this new series (compound A) inhibited Bcl-x L/Bak, Bcl-x L/Bax and Bcl-x L/Bid interactions with IC 50 values around 25 μM.

Structure and dynamics of human vimentin intermediate filament dimer and tetramer in explicit and implicit solvent models

Intermediate filaments, in addition to microtubules and microfilaments, are one of the three major components of the cytoskeleton in eukaryotic cells, and play an important role in mechanotransduction as well as in providing mechanical stability to cells at large stretch. The molecular structures, mechanical and dynamical properties of the intermediate filament basic building blocks, the dimer and the tetramer, however, have remained elusive due to persistent experimental challenges owing to the large size and fibrillar geometry of this protein. We have recently reported an atomistic-level model of the human vimentin dimer and tetramer, obtained through a bottom-up approach based on structural optimization via molecular simulation based on an implicit solvent model (Qin et al. in PLoS ONE 2009 4(10):e7294, 9). Here we present extensive simulations and structural analyses of the model based on ultra large-scale atomistic-level simulations in an explicit solvent model, with system sizes exceeding 500,000 atoms and simulations carried out at 20ns time-scales. We report a detailed comparison of the structural and dynamical behavior of this large biomolecular model with implicit and explicit solvent models. Our simulations confirm the stability of the molecular model and provide insight into the dynamical properties of the dimer and tetramer. Specifically, our simulations reveal a heterogeneous distribution of the bending stiffness along the molecular axis with the formation of rather soft and highly flexible hinge-like regions defined by non-alpha-helical linker domains. We report a comparison of Ramachandran maps and the solvent accessible surface area between implicit and explicit solvent models, and compute the persistence length of the dimer and tetramer structure of vimentin intermediate filaments for various subdomains of the protein. Our simulations provide detailed insight into the dynamical properties of the vimentin dimer and tetramer intermediate filament building blocks, which may guide the development of novel coarse-grained models of intermediate filaments, and could also help in understanding assembly mechanisms.

Equilibrium unfolding of kinetically stable serine protease milin: the presence of various active and inactive dimeric intermediates

Kinetically stable homodimeric serine protease milin reveals high conformational stability against temperature, pH and chaotrope [urea, guanidine hydrochloride (GuHCl) and guanidine isothiocynate (GuSCN)] denaturation as probed by circular dichroism, fluorescence, differential scanning calorimetry and activity measurements. GuSCN induces complete unfolding in milin, whereas temperature, urea and GuHCl induce only partial unfolding even at low pH, through several intermediates with distinct characteristics. Some of these intermediates are partially active (viz. in urea and 2 M GuHCl at pH 7.0), and some exhibited strong ANS binding as well. All three tryptophans in the protein seem to be buried in a rigid, compact core as evident from intrinsic fluorescence measurements coupled to equilibrium unfolding experiments. The protein unfolds as a dimer, where the unfolding event precedes dimer dissociation as confirmed by hydrodynamic studies. The solution studies performed here along with previous biochemical characterization indicate that the protein has alpha-helix and beta-sheet rich regions or structural domains that unfold independently, and the monomer association is isologous. The complex unfolding pathway of milin and the intermediates has been characterized. The physical, physiological and probable therapeutic importance of the results has been discussed.

Phase diagram of the frustrated spin ladder

We re-visit the phase diagram of the frustrated spin-1/2 ladder with two competing inter-chain antiferromagnetic exchanges, rung coupling J_\perp and diagonal coupling J_\times. We suggest, based on the accurate renormalization group analysis of the low-energy Hamiltonian of the ladder, that marginal inter-chain current-current interaction plays central role in destabilizing previously predicted intermediate columnar dimer phase in the vicinity of classical degeneracy line J_\perp = 2J_\times. Following this insight we then suggest that changing these competing inter-chain exchanges from the previously considered antiferromagnetic to the ferromagnetic ones eliminates the issue of the marginal interactions altogether and dramatically expands the region of stability of the columnar dimer phase. This analytical prediction is convincingly confirmed by the numerical density matrix renormalization group and exact diagonalization calculations as well as by the perturbative calculation in the strong rung-coupling limit. The phase diagram for ferromagnetic J_\perp and J_\times is determined.

Contribution of the Global Subunit Structure and Stargazin on the Maturation of AMPA Receptors

Subunit assembly governs regulation of AMPA receptor (AMPA-R) synaptic delivery and determines biophysical parameters of the ion channel. However, little is known about the molecular pathways of this process. Here, we present single-particle EM three-dimensional structures of dimeric biosynthetic intermediates of the GluA2 subunit of AMPA-Rs. Consistent with the structures of intact tetramers, the N-terminal domains of the biosynthetic intermediates form dimers. Transmembrane domains also dimerize despite the two ligand-binding domains (LBDs) being separated. A significant difference was detected between the dimeric structures of the wild type and the L504Y mutant, a point mutation that blocks receptor trafficking and desensitization. In contrast to the wild type, whose LBD is separated, the LBD of the L504Y mutant was detected as a single density. Our results provide direct structural evidence that separation of the LBD within the intact dimeric subunits is critical for efficient tetramerization in the endoplasmic reticulum and further trafficking of AMPA-Rs. The contribution of stargazin on the subunit assembly of AMPA-R was examined. Our data suggest that stargazin affects AMPA-R trafficking at a later stage of receptor maturation.

Monitoring electronic structure changes of TiO2(110) via sign reversal of adsorbate vibrational bands

The adsorption of NO on single crystalline rutile TiO(2)(110) surfaces at 100 K and the subsequent formation of N(2)O via NO dimer intermediates was studied by reflection-absorption infrared spectroscopy using a UHV-FTIR system. Analysis of the IR data reveals that the occurrence of s-polarized adsorbate vibrational bands always increases the reflectivity, giving negative bands, whereas p-polarized bands are either positive or negative, depending on the reduction state of the substrate. This sign reversal of optical bands is caused by vacancy doping, which also affects the optical constants governing the complex interplay between reflection and transmission of p-polarized light on a dielectric substrate.

Anthrax Protective Antigen Oligomerization Regulates Toxin Activity

Anthrax toxin (Atx) is a key virulence factor secreted by Bacillus anthracis. This three-protein toxin includes protective antigen (PA) and two enzymatic components, lethal factor (LF) and edema factor (EF), which must assemble into oligomeric complexes to disrupt cell physiology. Atx complexes are endocytosed, where they convert to a transmembrane channel that transports LF and EF into the cytosol. Assembly from monomeric components may occur in two physiological contexts: 1) in the bloodstream and 2) on cell surfaces. We have previously shown that the assembly of toxin complexes on cell surfaces produces a mixture of ring-shaped homooctameric or homoheptameric PA oligomers in a 1:2 ratio, which assemble via dimeric PA intermediates. Here we investigate how Atx complexes assemble in bovine blood. We find that, under these conditions, the predominant toxin complex that assembles is octameric. Incubation in blood causes heptameric LT complexes to lose greater than 90% cytotoxicity, whereas octameric LT complexes retain their activity. To understand the molecular mechanism of the apparent differential loss of toxin activity, we determined the pH-threshold of conversion to the channel state for each oligomeric complex. We find that the octameric toxin has a lower pH-threshold for channel formation than the heptamer. A consequence of this is that heptamers are inactivated by premature conversion to the channel state, whereas the octamers remain in the functional prechannel state. We propose that assembly of two oligomeric Atx complexes may provide a regulation mechanism for anthrax toxin cytotoxicity in both assembly at cell-surfaces and in the bloodstream. The assembly of octameric toxin complexes at the cell surface may alleviate potential assembly bottlenecks incurred by the mechanism of assembly via PA dimers, while in the bloodstream they may serve to maintain cytotoxicity during anthrax pathogenesis.

Characterizing the transcriptional regulation of let-721, a Caenorhabditis elegans homolog of human electron flavoprotein dehydrogenase

LET-721 is the Caenorhabditis elegans ortholog of electron-transferring flavoprotein dehydrogenase (ETFDH). We are studying this protein in C. elegans in order to establish a tractable model system for further exploration of ETFDH structure and function. ETFDH is an inner mitochondrial membrane localized enzyme that plays a key role in the beta-oxidation of fatty acids and catabolism of amino acids and choline. ETFDH accepts electrons from at least twelve mitochondrial matrix flavoprotein dehydrogenases via an intermediate dimer protein and transfers the electrons to ubiquinone. In humans, ETFDH mutations result in the autosomal recessive metabolic disorder, multiple acyl-CoA dehydrogenase deficiency. Mutants of let-721 in C. elegans are either maternal effect lethals or semi-sterile. let-721 is transcribed in the pharynx, body wall muscle, hypoderm, intestine and somatic gonad. In addition, the subcellular localization of LET-721 agrees with predictions that it is localized to mitochondria. We identified and confirmed three cis-regulatory sequences (pha-site, rep-site, and act-site). Phylogenetic footprinting of each site indicates that they are conserved between four Caenorhabditis species. The pha-site mapped roughly 1,300 bp upstream of let-721's translational start site and is necessary for expression in pharyngeal tissues. The rep-site mapped roughly 830 bp upstream of the translational start site and represses expression of LET-721 within pharyngeal tissues. The act-site mapped roughly 800 bp upstream of the translational start site and is required for expression within spermatheca, body wall muscle, pharynx, and intestine. Taken together, we find that LET-721 is a mitochondrially expressed protein that is under complex transcriptional controls.

Dinitrogen Activation by Fryzuk’s [Nb(P2N2)] Complex and Comparison with the Laplaza-Cummins [Mo{N(R)Ar}3] and Schrock [Mo(N3N)] Systems

The reaction profile of N(2) with Fryzuk's [Nb(P(2)N(2))] (P(2)N(2)=PhP(CH(2)SiMe(2)NSiMe(2)CH(2))(2)PPh) complex is explored by density functional calculations on the model [Nb(PH(3))(2)(NH(2))(2)] system. The effects of ligand constraints, coordination number, metal and ligand donor atom on the reaction energetics are examined and compared to the analogous reactions of N(2) with the three-coordinate Laplaza-Cummins [Mo{N(R)Ar}(3)] and four-coordinate Schrock [Mo(N(3)N)] (N(3)N=[(RNCH(2)CH(2))(3)N](3-)) systems. When the model system is constrained to reflect the geometry of the P(2)N(2) macrocycle, the N--N bond cleavage step, via a N(2)-bridged dimer intermediate, is calculated to be endothermic by 345 kJ mol(-1). In comparison, formation of the single-N-bridged species is calculated to be exothermic by 119 kJ mol(-1), and consequently is the thermodynamically favoured product, in agreement with experiment. The orientation of the amide and phosphine ligands has a significant effect on the overall reaction enthalpy and also the N--N bond cleavage step. When the ligand constraints are relaxed, the overall reaction enthalpy increases by 240 kJ mol(-1), but the N(2) cleavage step remains endothermic by 35 kJ mol(-1). Changing the phosphine ligands to amine donors has a dramatic effect, increasing the overall reaction exothermicity by 190 kJ mol(-1) and that of the N--N bond cleavage step by 85 kJ mol(-1), making it a favourable process. Replacing Nb(II) with Mo(III) has the opposite effect, resulting in a reduction in the overall reaction exothermicity by over 160 kJ mol(-1). The reaction profile for the model [Nb(P(2)N(2))] system is compared to those calculated for the model Laplaza and Cummins [Mo{N(R)Ar}(3)] and Schrock [Mo(N(3)N)] systems. For both [Mo(N(3)N)] and [Nb(P(2)N(2))], the intermediate dimer is calculated to lie lower in energy than the products, although the final N-N cleavage step is much less endothermic for [Mo(N(3)N)]. In contrast, every step of the reaction is favourable and the overall exothermicity is greatest for [Mo{N(R)Ar}(3)], and therefore this system is predicted to be most suitable for dinitrogen cleavage.

Seeing red: pheomelanin synthesis uncovered

Seeing red: pheomelanin synthesis uncovered

Structural, functional and unfolding characteristics of glutathione S-transferase of Plasmodium vivax

Glutathione S-transferases (GSTs) of Plasmodium parasites are potential targets for antimalarial drug and vaccine development. We investigated the equilibrium unfolding, functional activity regulation and stability characteristics of the unique GST of Plasmodium vivax ( PvGST). Despite high sequence, structural, functional, and evolutionary similarity, the unfolding behavior of PvGST was significantly different from Plasmodium falciparum GST ( PfGST). The unfolding pathway of PvGST was non-cooperative with stabilization of an inactive dimeric intermediate. The absence of any compact, folded monomeric intermediate during the unfolding transition suggests that inter-subunit interactions play an important role in stabilizing the protein. Presence of salts effectively inhibited PvGST enzymatic activity by quenching the nucleophilicity of the thiolate anion of GSH. Based on the present findings, together with our previous studies on PfGST, we propose that the regulation of GST enzymatic activity through a dimer–tetramer transition via GSH binding is an exclusive feature of Plasmodium.

Theoretical Studies of N2 Reduction to Ammonia in Fe(dmpe)2N2

Electronic structure calculations using density functional theory were performed on potential intermediates in the reaction of Fe(dmpe)(2)N(2) (dmpe = 1,2-bis(dimethylphosphino)ethane) with protons. Three mechanisms were investigated and compared, and the possibility of a two-electron reduction by a sacrificial Fe(dmpe)(2)N(2) complex was considered in each mechanism. A Chatt-like mechanism, involving the stepwise addition of protons to the terminal nitrogen, was found to be the least favorable. A second pathway involving dimerization of the Fe(dmpe)(2)N(2) complex, followed by the stepwise addition of protons leading to hydrazine, was found to be energetically favorable; however many of the dimeric intermediates prefer to dissociate into monomers. A third mechanism proceeding through diazene and hydrazine intermediates, formed by alternating protonation of each nitrogen atom, was found to be the most energetically favorable.

A Comparison of N2 Cleavage in Schrock's Mo[N3N] and Laplaza–Cummins' Mo[N(R)Ar]3 Systems

The four-coordinate Mo[N(3)N] complex, [N(3)N] = [{RNCH(2)CH(2)}(3)N], R = 3,5-(2,4,6-iPr(3)C(6)H(2))(2)C(6)H(3) (HIPT), which is capable of converting N(2) to ammonia catalytically, reacts with N(2) in a similar manner to Mo[N(R)Ar](3) (R = tBu, Ar = 3,5-C(6)H(3)Me(2)) to form a dinitrogen-bridged dimer intermediate, but unlike its three-coordinate counterpart, N(2) cleavage is not observed. To rationalise these differences, the reaction of N(2) with the model Mo[NH(2)](3)[NH(3)] and full ligand Mo[N(3)N] systems was explored using density functional theory and compared with the results of an earlier study involving the model three-coordinate Mo[NH(2)](3) system. Although the overall reaction is exothermic, the final N-N cleavage step is calculated to be endothermic by 75 kJ mol(-1) for the model system when the Mo-amine cap bond length is fixed to mimic the constraints of the ligand straps, but exothermic by 14 kJ mol(-1) for the full ligand system. In the latter case, the slightly exothermic cleavage step can be attributed to the destabilization of the N(2) bridged dimer relative to the nitride product owing to the steric effects of the bulky R groups. The activation barrier for N-N cleavage is estimated at 151 kJ mol(-1) for the model system, more than twice the calculated value for Mo[NH(2)](3), and even greater, 213 kJ mol(-1), for the full ligand [N(3)N]Mo system. A bonding analysis shows that although the binding of the amine cap helps to stabilize the intermediate dimer, at the same time it destabilizes the metal d-orbitals involved in backbonding to the pi* orbitals on N(2). As a result, backdonation is less efficient and N-N activation reduced compared to the three-coordinate system. Thus, the increased stability of the intermediate dimer on binding of the amine cap combined with the reduced level of N-N activation and higher kinetic barrier, explain why N-N cleavage has not been observed experimentally for the four-coordinate Mo[N(3)N] system.

Qualitative and quantitative discrimination of fake and true alkene rotation processes in pd(η 2-olefin) complexes. A new bimolecular mechanism

The fluxional behaviour of [Pd(η 2-fn)(N-SMe)] ( 2) (fn = fumaronitrile, N-SMe = 2-methylthiomethylpyridine) and of [Pd(η 2-tmetc)( N- N′-4-anisyl)] ( 3) (tmetc = tetramethylethylenetetracarboxylate, N- N′-4-anisyl = 2-(4-methoxyphenyliminomethane)pyridine) were monitored by 1H NMR spectroscopy and quantitatively determined by line-shape analyses (for 2) and selective inversion recovery experiments (for 3). The coalescence of the AB multiplet of fn hydrogens of 2 is concentration dependent and presents a strongly negative Δ S ≠, suggesting the intermediacy of a dimeric complex and ruling out the hypothesis of olefin rotation. The accurate evaluation of all spectral features also allows determination of the approaching mode of the monomeric units. The inversion transfer between the tmetc methyls of 3 reveals a true propeller-like olefin rotation. The presence of a nucleophilic electron pair at sulfur in 2 triggers the formation of the dimeric intermediate.

Sequence-Scrambling Fragmentation Pathways of Protonated Peptides

The gas-phase structures and fragmentation pathways of the N-terminal b and a fragments of YAGFL-NH(2), AGLFY-NH(2), GFLYA-NH(2), FLYAG-NH(2), and LYAGF-NH(2) were investigated using collision-induced dissociation (CID) and detailed molecular mechanics and density functional theory (DFT) calculations. Our combined experimental and theoretical approach allows probing of the scrambling and rearrangement reactions that take place in CID of b and a ions. It is shown that low-energy CID of the b(5) fragments of the above peptides produces nearly the same dissociation patterns. Furthermore, CID of protonated cyclo-(YAGFL) generates the same fragments with nearly identical ion abundances when similar experimental conditions are applied. This suggests that rapid cyclization of the primarily linear b(5) ions takes place and that the CID spectrum is indeed determined by the fragmentation behavior of the cyclic isomer. This can open up at various amide bonds, and its fragmentation behavior can be understood only by assuming a multitude of fragmenting linear structures. Our computational results fully support this cyclization-reopening mechanism by showing that protonated cyclo-(YAGFL) is energetically favored over the linear b(5) isomers. Furthermore, the cyclization-reopening transition structures are energetically less demanding than those of conventional bond-breaking reactions, allowing fast interconversion among the cyclic and linear isomers. This chemistry can lead in principle to complete loss of sequence information upon CID, as documented for the b(5) ion of FLYAG-NH(2). CID of the a(5) ions of the above peptides produces fragment ion distributions that can be explained by assuming b-type scrambling of their parent population and a --> a*-type rearrangement pathways ( Vachet , R. W. , Bishop , B. M. , Erickson , B. W. , and Glish , G. L. J. Am. Chem. Soc. 1997, 119, 5481 ). While a ions easily undergo cyclization, the resulting macrocycle predominantly reopens to regenerate the original linear structure. Computational data indicate that the a --> a*-type rearrangement pathways of the linear a isomers involve post-cleavage proton-bound dimer intermediates in which the fragments reassociate and the originally C-terminal fragment is transferred to the N-terminus.

Refolding of the hyperthermophilic protein Ssh10b involves a kinetic dimeric intermediate

The alpha/beta-mixed dimeric protein Ssh10b from the hyperthermophile Sulfolobus shibatae is a member of the Sac10b family that is thought to be involved in chromosomal organization or DNA repair/recombination. The equilibrium unfolding/refolding of Ssh10b induced by denaturants and heat was fully reversible, suggesting that Ssh10b could serve as a good model for folding/unfolding studies of protein dimers. Here, we investigate the folding/unfolding kinetics of Ssh10b in detail by stopped-flow circular dichroism (SF-CD) and using GdnHCl as denaturant. In unfolding reactions, the native Ssh10b turned rapidly into fully unfolded monomers within the stopped-flow dead time with no detectable kinetic intermediate, agreeing well with the results of equilibrium unfolding experiments. In refolding reactions, two unfolded monomers associate in the burst phase to form a dimeric intermediate that undergoes a further, slower, first-order folding process to form the native dimer. Our results demonstrate that the dimerization is essential for maintaining the native tertiary interactions of the protein Ssh10b. In addition, folding mechanisms of Ssh10b and several other alpha/beta-mixed or pure beta-sheet proteins are compared.

Identification of a Dimeric Intermediate in the Unfolding Pathway for the Calcium-Binding Protein S100B

The S100 proteins comprise 25 calcium-signalling members of the EF-hand protein family. Unlike typical EF-hand signalling proteins such as calmodulin and troponin-C, the S100 proteins are dimeric, forming both homo- and heterodimers in vivo. One member of this family, S100B, is a homodimeric protein shown to control the assembly of several cytoskeletal proteins and regulate phosphorylation events in a calcium-sensitive manner. Calcium binding to S100B causes a conformational change involving movement of helix III in the second calcium-binding site (EF2) that exposes a hydrophobic surface enabling interactions with other proteins such as tubulin and Ndr kinase. In several S100 proteins, calcium binding also stabilizes dimerization compared to the calcium-free states. In this work, we have examined the guanidine hydrochloride (GuHCl)-induced unfolding of dimeric calcium-free S100B. A series of tryptophan substitutions near the dimer interface and the EF2 calcium-binding site were studied by fluorescence spectroscopy and showed biphasic unfolding curves. The presence of a plateau near 1.5 M GuHCl showed the presence of an intermediate that had a greater exposed hydrophobic surface area compared to the native dimer based on increased 4,4-dianilino-1,1′-binaphthyl-5,5′-disulfonic acid fluorescence. Furthermore, 1H–15N heteronuclear single quantum coherence analyses as a function of GuHCl showed significant chemical shift changes in regions near the EF1 calcium-binding loop and between the linker and C-terminus of helix IV. Together these observations show that calcium-free S100B unfolds via a dimeric intermediate.

Dimeric Building Blocks for Solid-Phase Synthesis of α-Peptide-β-Peptoid Chimeras

Recently, a novel type of antimicrobial and proteolytically stable peptidomimetic oligomers having an α-peptide-β-peptoid chimeric backbone was reported. The present paper describes efficient protocols for the preparation of a wide range of dimeric building blocks, displaying different types of side-chains, for use in solid-phase synthesis (SPS) of libraries of this type of oligomers. The β-peptoid monomers were obtained by microwave-assisted aza-Michael additions to acrylic esters. Subsequent solution-phase peptide coupling with suitably protected α-amino acids afforded dimeric intermediates. Even sluggish peptide couplings, involving sterically hindered N-alkyl-β-alanines or amino acids with bulky side-chains, gave high yields on multigram-scale when using microwave (MW) irradiation. Protecting group and side-chain manipulations were performed as one-pot solution-phase procedures to afford ten different building blocks in good to excellent yields. Finally, the efficiency of SPS oligomerization of a representative dimer was demonstrated by preparing 10- to 16-residue homomers and by the assembly of four different building blocks to give a diversely functionalized octamer.

Thermal unfolding of Escherichia coli trigger factor studied by ultra-sensitive differential scanning calorimetry

Temperature-induced unfolding of Escherichia coli trigger factor (TF) and its domain truncation mutants, NM and MC, were studied by ultra-sensitive differential scanning calorimetry (UC-DSC). Detailed thermodynamic analysis showed that thermal induced unfolding of TF and MC involves population of dimeric intermediates. In contrast, the thermal unfolding of the NM mutant involves population of only monomeric states. Covalent cross-linking experiments confirmed the presence of dimeric intermediates during thermal unfolding of TF and MC. These data not only suggest that the dimeric form of TF is extremely resistant to thermal unfolding, but also provide further evidence that the C-terminal domain of TF plays a vital role in forming and stabilizing the dimeric structure of the TF molecule. Since TF is the first molecular chaperone that nascent polypeptides encounter in eubacteria, the stable dimeric intermediates of TF populated during thermal denaturation might be important in responding to stress damage to the cell, such as heat shock.