Digestive Tract Microbiota Research Articles

Modulations in gastrointestinal microbiota during postpartum period fulfill energy requirements and maintain health of lactating Tibetan cattle.

Postpartum period of dairy cattle is an important phase of their life mainly associated with the changes in physiology, rumen function, and energy metabolism. Studies have shown that gut microbial composition undergoes drastic changes during the postpartum period. However, little is known about the temporal variations in digestive tract microbiota in postpartum Tibetan cattle. The aim of this study was to investigate the temporal variations in blood metabolites, ruminal fermentation, and microbial community of oral, rumen, and gut in lactating Tibetan cattle during postpartum. We collected blood, saliva, rumen fluid, and fecal samples from lactating Tibetan cattle during 1st week (1 W), the 2nd week (2 W), the 1st month (1 M), and the 2nd month (2 M) of the postpartum period. The microbiota of saliva, rumen fluid, and fecal samples were assessed using 16S rRNA sequencing. The rumen volatile fatty acid and blood parameters were also quantified. The content of volatile fatty acids (VFAs) and blood parameters showed opposite tendency to each other and reached to stability at 2 M. Rumen microbiota showed the highest alpha diversity compared to other two sites. At phylum level, the oral cavity was dominated by Proteobacteria, while most dominant phylum in rumen and feces were Firmicutes and Bacteroidetes, respectively. The dominant genera in oral cavity were Moraxella and Bibersteinia, while genera Prevotella 1 and Ruminococcaceae UCG-005 were dominant in rumen and fecal samples, respectively. Microbial network analysis revealed that most of the active genera in all networks belonged to phylum Firmicutes, indicating the importance of this phyla during postpartum period of lactating cattle. The functional analysis revealed distinct division of labor among three gastrointestinal sites associated with defense, fatty acid synthesis, and maintaining health of host. All in all, our findings provide insights into the metabolic and microbial changes of lactating Tibetan cattle and help to the improvement of the management strategies.

Diet and epigenetics of colon carcinogenesis: A review article

The following article includes a chart illustrating the dietary components of various food classes that are involved in the pathogenesis of colorectal cancer (CRC), as well as information on the key players in the digestive tract microbiota and the many dysfunctions involved in the onset or progression of CRC. With its complex course throughout history, colorectal cancer has advanced the understanding of its initiation and improvement. The understanding of how colorectal cancer starts and improves through eating less has advanced over time. By and enormous, the utilization of ruddy and organized meats has been related to an expanded chance of start. These meats contain compounds such as nitrates and nitrites that can serve as diagram carcinogens inside the colon. Understanding how diets affect epigenetic modifications inside the intestinal mucosa is particularly important since abnormally methylated genes may serve as early detection and prognostic markers for colon cancer. Epigenetic changes, such as changes in methylation, are potentially reversible and, therefore, offer interesting targets for supportive and preventative therapy, unlike intrinsic changes in cancer. The growing role of microbial metabolites and a few clearly beneficial dietary additions in the management of CRC are outlined in this article.

Alterations in the sarcopenia index are associated with inflammation, gut, and oral microbiota among heart failure, left ventricular assist device, and heart transplant patients

BackgroundSarcopenia, characterized by loss of muscle mass and function, is prevalent in heart failure (HF) and predicts poor outcomes. We investigated alterations in sarcopenia index (SI), a surrogate for skeletal muscle mass, in HF, left ventricular assist device (LVAD) and heart transplant (HT), and assessed its relationship with inflammation and digestive tract (gut and oral) microbiota. MethodsWe enrolled 460 HF, LVAD and HT patients. Repeated measures pre/post procedures were obtained prospectively in a subset of LVAD and HT patients. SI (serum Creatinine/Cystatin C) and inflammatory biomarkers (C-reactive protein, interleukin-6, tumor necrosis factor-alpha) were measured in 271 and 622 blood samples, respectively. Gut and saliva microbiota were assessed via 16S rRNA sequencing among 335 stool and 341 saliva samples. Multivariable regression assessed the relationship between SI and i) New York Heart Association class; ii) pre- vs. post-LVAD or HT; iii) biomarkers of inflammation and microbial diversity. ResultsMedian (interquartile range) natural logarithm (ln)-SI was -0.13 (-0.32,0.05). Ln-SI decreased across worsening HF class, further declined at 1-month after LVAD and HT and rebounded over time. Ln-SI was correlated with inflammation (r=-0.28, p<0.01), and gut (r=0.28, p<0.01) and oral microbial diversity (r=0.24, p<0.01), these associations remained significant after multivariable adjustment in the combined cohort but not for all individual cohorts. Presence of the gut taxa Roseburia inulinivorans was associated with increased SI. ConclusionsSI levels decreased in symptomatic HF and remained decreased long-term after LVAD and HT. In the combined cohort, SI levels covaried with inflammation in a similar fashion and significantly related to overall microbial (gut and oral) diversity, including specific taxa compositional changes.

Modulation of chicken gut microbiota for enhanced productivity and health: A review.

Microbiota in the digestive tract has become an interesting topic for researchers in recent years. The profile of chicken digestive tract microbiota and its relationship with health and production efficiency have become basic data for modulating the diversity and abundance of the digestive tract microbiota. This article reviews the techniques used to analyze the diversity, role, and function of the gastrointestinal microbiota and the mechanisms by which they are modulated. The gut microbiota plays an important role in animal production, especially during feed digestion and animal health, because it interacts with the host against pathogens. Feed modulation can be a strategy to modulate gut composition and diversity to increase production efficiency by improving growth conditions.

Abstract P103: Alterations in Sarcopenia Index Are Associated With Inflammation, Gut and Oral Microbiota Among Heart Failure, Left Ventricular Assist Device and Heart Transplant Patients

Introduction: Sarcopenia, characterized by loss of muscle mass and function, is prevalent in heart failure (HF) and associated with poor outcomes. We investigated alterations in sarcopenia index (SI), a surrogate marker of skeletal muscle mass, in HF, left ventricular assist device (LVAD) and heart transplant (HT) and assessed its relationship with inflammation and digestive tract (gut and oral) microbiota. Hypothesis: Sarcopenia will be associated with increased inflammation, dysbiotic microbial signatures, higher HF class, and earlier time post-HT or post LVAD. Methods: We enrolled 460 HF, LVAD and HT patients. Repeated measures pre and post procedures were obtained in a subset of LVAD and HT patients. Sarcopenia index (serum Creatinine/Cystatin C) and inflammatory biomarkers (C-reactive protein, interleukin-6, tumor necrosis factor-alpha) were measured in 271 and 622 blood samples, respectively. Gut and saliva microbiota were assessed via 16S rRNA sequencing among 335 stool and 341 saliva samples. Multivariable regression models were used to assess the relationship between SI and i) New York Heart Association class; ii) pre- vs. post-LVAD or HT; iii) biomarkers of inflammation and microbial diversity. Results: Median (interquartile range) ln-SI was -0.13(-0.32,0.05). Ln-SI decreased across worsening HF class, further declined within the 1-month after LVAD and HT and rebounded over time to the levels of symptomatic HF. Ln-SI demonstrated an inverse correlation with inflammation (r=-0.28, p&lt;0.0001), and a positive correlation with gut (r=0.26, p&lt;0.0001) and oral microbial diversity (r=0.24, p&lt;0.0001). Presence of the gut taxa Roseburia inulinivorans was associated with increased SI. Conclusions: SI levels decreased in symptomatic HF and remained decreased long-term after LVAD and HT. SI levels covaried with inflammation, gut and oral microbiota in a similar fashion.

Isolation &amp; Identification of Microbiota Present in Different Probiotic Samples &amp; Test Against Commercially Available Antibiotics

Probiotic bacteria are primarily offered in fermented foods, and dairy products which plays an important role as probiotic carriers. For various reasons, functional dairy foods are highly adapted to promote probiotics' favorable health image: (i) Fermented foods, particularly dairy products, have a positive health image due to their centuries-long use; (ii) people are aware that fermented foods contain living microorganisms; and (iii) probiotics are used as a starter to combine the positive images of fermentation and probiotic cultures. Probiotics are live bacterial formulations (food or medication) that have been clinically proven to improve human health. The majority of probiotics work by regulating mucosal barrier function and immunological activity. The human digestive tract and intestinal microbiota are specialized targets and possess certain characteristics of probiotics. In this research, commercially available antibiotics and separated microorganisms from them by culturing them in various nutritional media. The antibacterial activity was then observed. Different biochemical tests have been performed on samples to identify the types of bacteria present. The bacteria identified from pickle, lassi, watermelon, soy sauce were Micrococcus varians, Pseudomonas aeruginosa, Vibrio species, Lactobacillus fermenti, respectively. The antimicrobial activity of different antibiotics was tested against the isolated microbes from which cefolac-200 shows greater zone of inhibition against Pseudomonas aeruginosa (26.75 mm) lowest zone of inhibition against Lactobacillus fermenti (11.5 mm). Azithromycin and CV-625 does not show any zone of inhibition against Micrococcus varians. Some future studies should be performed to use these isolates reliably including molecular techniques like 16S rRNA sequencing for accurate identification of lactic acid bacterial species.

Differences in serum metabolome profile explain individual variation in growth performance of young goats

High growth rates and body weight are important traits of young dairy goats that can shorten generation intervals, improve animal performance, and increase economic benefits. In the present study, ninety-nine, 6-month-old, female goats were fed with the same diet and kept under the same management condition. The ten goats with highest average daily gain (ADG, HADG, 135.27 ± 4.59 g/d) and ten goats with lowest ADG (LADG, 87.74 ± 3.13 g/d) were selected to identify the key serum metabolites associated with ADG, and to investigate the relationships of serum metabolome profiles with digestive tract microbiota. The results showed that a total of 125 serum metabolites were significantly different between HADG and LADG. Of these, 43 serum metabolites were significantly higher levels in HADG, including D-ornithine, l-glutamine, L-histidine, carnosine, LysoPC (16:1(9Z)/0:0), DCTP and hydroxylysine, while, 82 serum metabolites were significantly higher levels in LADG, including P-salicylic acid and deoxycholic acid 3-glucuronide. Pathway analysis indicated that these different metabolites were mainly involved in amino acid and lipid metabolism. Furthermore, Spearman's rank correlation analysis revealed that these differential serum metabolites were correlated with ADG and ADG-related bacteria. Notably, serum hydroxylysine and L-histidine could be used as biomarkers for distinguishing HADG and LADG goats, with an accuracy of >92.0%. SignificanceOur study confirms that individual microbiota and metabolic differences contribute to the variations of growth rate in young goats. Some serum metabolites may be useful in improving the growth performance of young goats, which provides directions for developing further nutritional regulation in the goat industry to achieve healthy feeding and efficiency enhancement.

Oral and gut microbiome alterations in heart failure: Epidemiology, pathogenesis and response to advanced heart failure therapies.

Despite significant advances in therapies, heart failure (HF) remains a progressive disease that, once advanced, is associated with significant death and disability. Cardiac replacement therapies with left ventricular assist device (LVAD) and heart transplantation (HT) are the only treatment options for advanced HF, while lifesaving they can also be lifespan limiting due to the associated complications. Systemic inflammation is mechanistically important in HF pathophysiology and progression. However, directly targeting inflammation in HF has not been beneficial thus far. These failed attempts at therapeutics might be related to our limited understanding of the factors that cause inflammation in HF, and, therefore, to our inability to investigate these triggers in interventional studies. Observational studies have consistently demonstrated associations between alterations in the digestive (gut and oral) microbiome, inflammation and HF risk and progression. Additionally, recent data indicate that these microbial perturbations persist following LVAD and HT, along with residual inflammation and oxidative stress. Furthermore, there is rising recognition of the critical contribution of the microbiome to the metabolism of immunosuppressive drugs after HT. Cumulatively, these findings might posit a mechanistic link between microbiome alterations, systemic inflammation, and adverse outcomes in HF patients before and after cardiac replacement therapies. This review (1) provides an update on available data linking changes in digestive tract microbiota, inflammation, and oxidative stress, to HF pathogenesis and progression; (2) describes evolution of these relationships following LVAD and HT; and (3) outlines present and future intervention strategies that can manipulate the microbiome and possibly modify HF disease trajectory.

Effects of dietary synbiotics and biofloc meal on the growth, tissue histomorphology, whole-body composition and intestinal microbiota profile of Nile tilapia (Oreochromis niloticus) cultured at different salinities

In this study, the effects of synbiotic and biofloc meal on the growth performance, gastrointestinal microbiota diversification, proximate body composition, total gut bacterial counts, liver and intestinal histomorphology of Nile tilapia (Oreochromis niloticus) reared under different salinity levels were examined. Fishes with an initial weight of 21.52 ± 2.21 g were divided into three main groups (freshwater 0 ppt, brackish water 6 ppt, and marine water 18 ppt), each with triplicates of control and synbiotic groups. While the control groups were not supplemented with any feed additives, a single dose of combined dietary synbiotic and biofloc meal (probiotic mixture for 1 kg of feed: Lactobacillus Plantarum 10 ml 1.5 × 109 cob g−1, Saccharomyces boulardii 250 mg 5 × 109 cob g−1 and Lactobacillus acidophilus 25 mg 5 × 109 cob g−1, mannan oligosaccharides as prebiotic: 2 g kg−1 feed, and biofloc meal: 3 g kg−1 feed) has been added to the feeds of all the experimental groups. At the end of this trial, the highest final body weight (FBW) (42.70 ± 3.25 g) and weight gain (WG) (21.79 ± 5.07 g) were found in the freshwater group fed with synbiotic and biofloc meal-added feeds, while the lowest FBW (37.13 ± 5.79 g) and WG (15.65 ± 6.00 g) were recorded in the marine water control group (p < 0.003). Similarly, the lowest and highest FCR (1.17 and 2.00) were obtained in freshwater synbiotic and marine control groups, respectively (p < 0.05). In terms of survival rate, no significant difference (p > 0.05) was noted among the groups. Unlike the growth performance, which decreased with the increase of water salinity, the increase in salinity significantly improved the whole-body composition. Further, the supplementation of synbiotic and biofloc meal enhanced both gut bacterial count and whole-body composition. Brackish and marine water did not cause significant adverse effects on the digestive tract microbiota profile and tissue histomorphology. Based on this study's findings, adding synbiotics and biofloc meal to Nile tilapia diets is an effective strategy that can mitigate the potential adverse effects of salinity on growth and also improve gut microbiota, body composition and tissue histomorphology.

Spatial distribution of gut microbiota in mice during the occurrence and remission of hyperuricemia.

Previous studies have shown that anserine can alleviate hyperuricemia by changing the fecal microbiota of hyperuricemic mice. However, the fecal microbiota could not fully represent the distribution of the whole gut microbiota. Knowing the spatial distribution of the gastrointestinal tract microbiota is therefore important for understanding its action in the occurrence and remission of hyperuricemia. This study provides a comprehensive map of the most common bacterial communities that colonize different parts of the mouse gastrointestinal tract (stomach, duodenum, ileum, cecum, and colon) using a modern methodological approach. The stomach, colon, and cecum showed the greatest richness and diversity in bacterial species. Three clusters of bacterial populations were observed along the digestive system: (1) in the stomach, (2) in the duodenum and ileum, and (3) in the colon and cecum. A high purine solution changed the composition and abundance of the digestive tract microbiota, and anserine relieved hyperuricemia by restoring the homeostasis of the digestive tract microbiota, especially improving the abundance of probiotics in the digestive tract. This could be the starting point for further research on the regulation of hyperuricemia by gut microbiota with the ultimate goal of promoting health and welfare. © 2022 Society of Chemical Industry.

Investigating the effects of glyphosate on the bumblebee proteome and microbiota

Glyphosate is one of the most widely used herbicides globally. It acts by inhibiting an enzyme in an aromatic amino acid synthesis pathway specific to plants and microbes, leading to the view that it poses no risk to other organisms. However, there is growing concern that glyphosate is associated with health effects in humans and an ever-increasing body of evidence that suggests potential deleterious effects on other animals including pollinating insects such as bees. Although pesticides have long been considered a factor in the decline of wild bee populations, most research on bees has focussed on demonstrating and understanding the effects of insecticides. To assess whether glyphosate poses a risk to bees, we characterised changes in survival, behaviour, sucrose solution consumption, the digestive tract proteome, and the microbiota in the bumblebee Bombus terrestris after chronic exposure to field relevant doses of technical grade glyphosate or the glyphosate-based formulation, RoundUp Optima+®. Regardless of source, there were changes in response to glyphosate exposure in important cellular and physiological processes in the digestive tract of B. terrestris, with proteins associated with oxidative stress regulation, metabolism, cellular adhesion, the extracellular matrix, and various signalling pathways altered. Interestingly, proteins associated with endocytosis, oxidative phosphorylation, the TCA cycle, and carbohydrate, lipid, and amino acid metabolism were differentially altered depending on whether the exposure source was glyphosate alone or RoundUp Optima+®. In addition, there were alterations to the digestive tract microbiota of bees depending on the glyphosate source No impacts on survival, behaviour, or food consumption were observed. Our research provides insights into the potential mode of action and consequences of glyphosate exposure at the molecular, cellular and organismal level in bumblebees and highlights issues with the current honeybee-centric risk assessment of pesticides and their formulations, where the impact of co-formulants on non-target organisms are generally overlooked.

Effects of Lactic Acid Bacteria-Inoculated Corn Silage on Bacterial Communities and Metabolites of Digestive Tract of Sheep

Silage is widely used as ruminant feed all over the world. Lactic acid bacteria inoculants are commonly applied in silage production to improve preservation efficiency. To investigate the effects of lactic acid bacteria-inoculated silage on the bacterial communities and metabolites of the digestive tract, twenty-four local hybrid rams (a hybrid of Small Tail Han sheep and Mongolian sheep with an average initial BW 27.8 ± 3.05 kg) were randomly divided into four groups fed with corn stalk (S), corn stalk silage, corn stalk silage treated with Lentilactobacillusplantarum (P), or corn stalk silage treated with L. buchneri (B). The results showed that compared with the control and B groups, the inoculant with P significantly increased silage dry matter (DM) content, while the pH value was significantly higher than that in group B, and the aerobic stability was significantly lower than that in group B. Firmicutes and Bacteroidetes were the two dominant phyla of digestive tract microbiota in sheep. Compared with corn stalk, sheep fed with corn stalk silage showed a higher relative abundance of Prevotella. P-treated silage decreased the relative abundance of Firmicutes at the phylum level in rumen fluid. Silage treated with P or B increased the relative abundance of Prevotella, Ruminococcus, and Fibrobacter at the genus level in the rumen. A total of 498 differential metabolites in the rumen were detected when comparing the corn stalk and corn stalk silage groups. A total of 257 and 141 differential metabolites were detected when comparing the untreated silage and silages treated with P and B, respectively. These metabolites in the sheep rumen were correlated with bacterial communities, especially Butyrivibrio, Fibrobacter, and Prevotella. In conclusion, the addition of P and B during ensiling could change the fermentation and metabolites in the rumen by influencing the bacterial community. The change induced by these inoculants might be beneficial for animals’ performance and the health of ruminants.

Once again about omega: impact of omega‑3 PUFAs on composition of mother’s milk and health of children

It is known that in the first year of life, the most intensive growth, maturation of the digestive tract and intestinal microbiota, the development of the child’s immune and nervous systems occur. A lot of evidence has been accumulated that the optimal composition of mother’s milk regulates the metabolism of the child and contributes to the prevention of diseases of various origins. One of the key components of breast milk that have a positive effect on the growth and development of the child are polyunsaturated fatty acids (PUFAs). Considering the prevalence of омега‑3 PUFA deficiency in the population, the most appropriate is the use of омега‑3 PUFAs (EPA + DHA) as part of IUD before pregnancy, throughout the entire period of gestation and breastfeeding.

The Spatial Landscape of the Bacterial Community and Bile Acids in the Digestive Tract of Patients With Bile Reflux.

BackgroundBile reflux can lead to inflammation and increased intestinal metaplasia. Since bile acids can influence the gastrointestinal environment, it is possible that bile reflux may alter the gastric microbiota and potentially the oral or gut microbiota. Bile acids have a very complex interrelationship with microbiota. We aimed to explore the characteristics of the digestive tract microbiota and bile acids profile in bile reflux patients.MethodsThis study included 20 chronic gastritis patients with bile reflux and 20 chronic gastritis patients without bile reflux. Saliva, gastric fluid, and fecal samples were collected for bile acid testing. Buccal mucosal swabs, gastric mucosal tissues, and feces were collected for bacteria detection. The UPLC-MS/MS examined bile acids profiles. 16S rRNA gene sequencing was used to analyze the bacterial profile.ResultsBilirubin in the blood increased in bile reflux patients. No other clinical factors were identified to be significantly associated with bile reflux. 12-DHCA, 6,7-diketo LCA, and βHDCA decreased while TUDCA increased in saliva of bile reflux patients. Streptococcus, Capnocytophaga, Neisseria, and Actinobacillus decreased in oral mucosa of bile reflux patients while Helicobacter, Prevotella, and Veillonella increased. Gastric bile acid levels were generally higher in bile reflux patients. Gastric mucosal microbiota was highly stable. The changes in fecal bile acids were insignificant. Bifidobacterium, Prevotella_2, Ruminococcus, Weissella, Neisseria, and Akkermansia decreased in fecal samples from bile reflux patients; while Alloprevotella, Prevotella_9, Parabacteroides, and Megamonas increased.ConclusionOur results demonstrate that bile reflux significantly alters the oral, gastric, and intestinal bile acids profiles but only influences the oral and gut microbiota composition. These findings indicate that bile reflux can modulate the gastrointestinal microbiota in a site-specific manner.

Изучение микробиоценоза жабр и кишечника рыб при их выращивании с применением препаратов на основе бактериофагов

Nowadays bacteriophages are widely used in veterinary medicine, bio-technology, agriculture and in particular in aquaculture. Narrow specificity affecting the bacterial microflora and selective influence on the pathogenic and opportunistic microorganisms allow using the bacteriophages for diagnosing, preventing and treating the diseases of farm animals and fish. The emergence of antibiotic-resistant strains of microorganisms involves the search for new drugs to combat them. In this regard, phage therapy is an alternative to antimicrobial treatment of bacterial diseases of animals and fish. Despite the lack of data on the bacteriophage-based drugs applications in aquaculture, this direction is found to be promising and relevant. There is given a comparative analysis of the microbiocenosis of the gills and intestines of two-year-olds of red tilapia farmed in the water with adding the poly-valence pyobacteriophage and fed by compound feed treated by the preparation. It has been found that the dominant position in the intestinal microbiocenosis of red tilapia belongs to Micrococcus bacteria, whose share made 45.7% of all isolates of the gastrointestinal tract. &#x0D; By the frequency of occurrence, the second place is taken by the Bacterium species (33.2%), the third place - Staphylococcus (16.1%) species. The remaining groups of intestinal microorganisms are presented by a significantly number of isolates. It has been stated that the gills microflora was represented by a smaller species composition compared to the digestive tract microbiota. Isolates of the Bacterium and Staphylococcus bacteria were dominating, while the Actinomycetales and Bacillus microorganisms were represented in smaller numbers (1-2 colonies). The addition of a bacteriophage to water and its processing of compound feed helps to reduce the contamination of gills and reduce pathogenic microflora in the intestines of fish.

Active Smoking Induces Aberrations in Digestive Tract Microbiota of Rats.

Cigarette smoking could have certain effects on gut microbiota. Some pioneering studies have investigated effects of active smoking on the microbiome in local segments of the digestive tract, while active smoking-induced microbiome alterations in the whole digestive tract have not been fully investigated. Here, we developed a rat model of active smoking and characterized the effects of active smoking on the microbiota within multiple regions along the digestive tract. Blood glucose and some metabolic factors levels, the microbial diversity and composition, relative abundances of taxa, bacterial network correlations and predictive functional profiles were compared between the control group and active smoking group. We found that active smoking induced hyperglycemia and significant reductions in serum insulin and leptin levels. Active smoking induced region-specific shifts in microbiota structure, composition, network correlation and metabolism function along the digestive tract. Our results demonstrated that active smoking resulted in a reduced abundance of some potentially beneficial genera (i.e. Clostridium, Turicibacter) and increased abundance of potentially harmful genera (i.e. Desulfovibrio, Bilophila). Functional prediction suggested that amino acid, lipid, propanoate metabolism function could be impaired and antioxidant activity may be triggered. Active smoking may be an overlooked risk to health through its potential effects on the digestive tract microbiota, which is involved in the cause and severity of an array of chronic diseases.

Хроническая фистула для изучения микробиома слепой кишки кролика

Abstract. The purpose of this work is to approve a device for studying the microbiome of the gastrointestinal tract of mammals. The study of the quantitative and qualitative composition of the digestive tract microbiota is one of the promising directions in metagenomics. Knowledge obtained about the organization of microbiocenosis genome, the determination of species composition and study of metabolic relationships between its representatives not only expand the understanding of its role in the process of evolution, speciation and breeding but also provide a scientifically substantiated basis for targeting changes in the microbiome to form a phenotype (optimization of feed bioconversion, increasing overall resistance, etc.). Scientific novelty. For the first time, the main characteristics of cellulolytic bacteria isolated from the chyme of the rabbit cecum were isolated, cultured and described through a chronic fistula. Methods. In order to carry out research aimed to study mammalian microbiome and its correction, the need arises to develop methods of obtaining microbiome samples from experimental animals. To obtain access to the chyme of the cecum in 7 rabbits for up to 3 months the chronic fistulas developed in Scientific Research Institute of Fur-Bearing Animal Breeding and Rabbit Breeding n. a. V. A. Afanas’ev were installed. No negative manifestations were observed in the animals after installation of the fistulas, no changes in appetite were detected, and complete healing of the skin wound was determined on the 9th day. Diagnostic laparotomies performed 3 months after fistula placement revealed no pathological processes in any of the studied animals. Results. Characteristics of cellulolytic bacteria of the rabbit cecum Butirivibrio fibrisolvens and Ruminococcus flavefaciens were studied. Data on their enzymatic effects on dietary components, fermentation products, digestion and formation of organic substances and chemical compounds are presented.

Approaches to prevention of antibiotic-associated diarrhea in children

The incidence of antibiotic-associated diarrhea, according to various authors, ranges from 5 to 39% and depends on the patient’s age and other contributing factors. Antibiotic-associated diarrhea can be caused by any antibiotic, regardless of dosage form or route of administration. In the pediatric population, the prevalence of antibiotic-associated diarrhea ranges from 6 to 70%. An urgent problem is the development of this disease against the background of a course of H. pylori eradication therapy, which significantly complicates tolerance and adherence to therapy. This article presents current data on the pathogenesis and risk factors of antibiotic-associated diarrhea in children. The clinical picture ranges from idiopathic enteritis to antibiotic-associated diarrhea caused by Cl. difficile - pseudomembranous colitis.The main principle of antibiotic-associated diarrhea treatment is cancellation of the antibacterial medicine that caused the diarrhea, or reducing its dose (if the course of the disease allows it). In complex treatment sorbents are used, correction of water-electrolyte balance is carried out. The use of probiotics seems quite logical for the treatment and prevention of antibiotic-associated diarrhea in terms of the pathogenesis of this condition. To correct dysbiosis, drugs are used to maintain and restore the quantitative and qualitative composition of the intestinal microbiota.Taking into account modern recommendations the main groups of drugs (probiotics, prebiotics, synbiotics) used for correction of intestinal microbiocenosis are presented. The mechanism of action of probiotics and mechanisms of their effect on intestinal microflora are considered. The basic requirements for bacterial strains that are part of the probiotic drugs are presented.The results of various randomized clinical trials and meta-analyses confirming the necessity of including probiotic complexes in antibiotic-associated diarrhea treatment regimens are presented from an evidence-based medicine perspective. The clinical effects of strains of Lactobacillusspp., Bifidobacterium spp.,Streptococcusspp. and Lactococcusspp. on the digestive tract microbiota are considered. The role of a synbiotic containing 9 probiotic strains of 4.5 * 109 CFU in one capsule and the prebiotic component fructooligosac-charides in the prevention of antibiotic-associated diarrhea in children is discussed separately. The results of microbiological studies confirmed the presence of microorganisms of genera Bifidobacterium, Lactobacillus, Streptococcus in the product, and the content of bacteria in one dose of the product was not less than 2 x 1010 CFU.

The Upper Digestive Tract Microbiome and Oesophageal Squamous Cell Carcinoma: Epidemiology, Pathogenesis, and Clinical Implications in Africa

The study of the microbiome has significantly contributed to our understanding of complex diseases including cancer, with a profound influence of the microbiota on clinical prognosis and the efficacy of cancer treatments. Oesophageal cancer is positioned amongst the most aggressive malignant diseases, resulting from a complex interaction between anthropometric, genetic, immune response, and environmental factors. Oesophageal squamous cell carcinoma (OSCC) is the most common type of oesophageal cancer and is a serious burden in Eastern Africa, in the area known as the African oesophageal cancer corridor (AOCC). OSCC is often diagnosed at a late stage, with patients already suffering from severe malnutrition and dehydration due to swallowing difficulties, leading to high mortality rates. So far, aetiological factors have been individually analysed with an inappropriate contextualisation. The upper digestive tract microbiome has been proposed to contribute to the onset and progression of OSCC but with limited understanding of the mechanisms behind this interaction. Data on African populations are limited, and the aetiology of AOCC is still poorly understood. This review discusses the current knowledge of the aetiology of OSCC in Africa, with special focus on the probable influence of the upper digestive tract microbiota.

Incidence of Infectious Diseases in the Military Went to the Mali Operations Theater

Abstract Soldiers on missions are at risk of contracting major infectious diseases. Some of the most common food or water-borne diseases include diarrhea (bacterial and protozoan), hepatitis A, and typhoid fever, all of which pose serious threats to communities. The studied group consists of 13 people who performed missions in the theater of operations in Mali between December 2020 and June 2021. The analyzes were performed in the medical analysis laboratory of the Military Emergency Hospital. The group consists of males with an average age of 35-45 years, most with hypercholesterolemia Analyzes were performed in the fields of microbiology, virology and biochemistry. before and after the mission, they left with antimalarial treatment. Pharyngeal, nasal and digestive tract microbiota showed no noticeable changes. Only in 2 cases of coproparasitological examination were positive on return for Blastocyst hominis (which is not an endemic parasite, being found in drinking water from unsafe sources) Following the analyzes performed, we came to the conclusion that the protection measures taken in the theaters of operations are effective, as there is no contamination on the studied group with endemic germs of the area.