Different Types Of Environmental Stress Research Articles

What do we know about the needle xylem structure of the genus Pinus?

Summary Studies of needle xylem structure (NXS) are of importance in understanding the survival, and functioning of conifers, particularly in response to environmental stressors. Herein, I review the current state-of-the-art about the NXS of genus Pinus, focusing on the xylem, tracheid, and pit structure. Genus Pinus is one of the most important and widely distributed genera of forest trees in the Northern Hemisphere. Pine species are adapted to different soil types and extreme environments imposed by elevation and latitude. They grow successfully in the boreal forest, the Mediterranean Basin, and in mountains. The importance of NXS for long-distance water transport in trees is discussed and the relationships between xylem structure and function are highlighted. Little is known about the NXS of pines, as such information was available only for 12 pine species. Moreover, current knowledge about the NXS of pines is mostly based on Pinus sylvestris L., especially regarding the effect of environmental conditions on NXS. So far, tracheid pit structure has been investigated in only one study. Although NXS is also significantly influenced by tree age, the position of needles within the crown, as well as the location of the cross-section along the longitudinal axis of the needle, a detailed needle sampling design is often missing. Hence, it is suggested to extend future studies to other pine species to explain their resistance to drought and cold. Additionally, increasing the number of studies on adult trees and distinguishing between the different types of environmental stress that a tree can face during its life cycle would be beneficial. I strongly appeal to precise description of needle sampling, which will allow us both intraspecific and interspecific comparisons. Increasing knowledge about the NXS of pines will help to better explain their resistance to environmental stress and predict their tolerance to future climate change.

Effect of Acute and Cumulative Stress on Gene Expression in Mammary Tissue and Their Interactions with Physiological Responses and Milk Yield in Saanen Goats

This study addresses the hypothesis that different acute stressors can cumulatively decrease milk yield. In fact, in a time of global warming, the impact of environmental stress and farm management practices on milk production remains unclear. In this context, our objective was to investigate the effect of acute and cumulative stress on gene expression in mammary tissue and their interactions with physiological responses and milk yield in Saanen goats. Thirty lactating goats were subjected to two treatments: (1) control (CT), in which goats were maintained following a habitual routine under comfort conditions; (2) stress (ST), in which the goats were subjected to different types of environmental stress: heat stress, adrenocorticotropic hormone administration, hoof care management, and exposure to rain. These stressors were performed sequentially, with one stress per day on four consecutive lactation days, to evaluate their effect on milk quality and milk yield. Our results showed that compared to CT goats, cumulative stress increased the gene expression of glucocorticoid receptor (GR), interferon-gamma (IFN-γ), superoxide dismutase (SOD), and catalase (CAT) in mammary tissue, which are indicators of cortisol action, inflammatory response, and antioxidant enzymes. Furthermore, the acute challenges imposed on ST goats changed their rectal temperature and respiratory frequency and increased cortisol, glucose, cholesterol, triglycerides, and high-density lipoprotein release in plasma when compared to CT goats. Although these physiological and metabolic responses restore homeostasis, ST goats showed lower milk yield and higher somatic cell count in milk than CT goats. In conclusion, the results confirmed our initial hypothesis that different acute stressors cumulatively decrease the milk yield in Saanen goats.

Cytogenetic characterization and molecular marker development for a wheat-T. boeoticum 4Ab (4B) disomic substitution line with stripe rust resistance.

Triticum boeoticum (2n = 2x = 14, AbAb) is an important relative of wheat. This species tolerates many different types of environmental stresses, including drought, salt, and pathogenic infection, and is lower in dietary fiber and higher in antioxidants, protein (15-18%), lipids, and trace elements than common wheat. However, the gene transfer rate from this species to common wheat is low, and few species-specific molecular markers are available. In this study, the wheat-T. boeoticum substitution line Z1889, derived from a cross between the common wheat cultivar Crocus and Triticum boeoticum line G52, was identified using multicolor fluorescence in situ hybridization (mc-FISH), multicolor genomic in situ hybridization (mc-GISH) and a 55K single nucleotide polymorphism (SNP) array. Z1889 was revealed to be a 4Ab (4B) substitution line with a high degree of resistance to stripe rust pathogen strains prevalent in China. In addition, 22 4Ab chromosome-specific molecular markers and 11 T. boeoticum genome-specific molecular markers were developed from 1145 4Ab chromosome-specific fragments by comparing the sequences generated by specific-length amplified fragment sequencing (SLAF-seq), with an efficiency of up to 55.0%. Furthermore, the specificity of these markers was verified in four species containing the Ab genome. These markers can not only be used for the detection of the 4Ab chromosome but also provide a basis for molecular marker-assisted selection-based breeding in wheat.

Fine root morphology and soil properties under influence of different tree stands along an altitudinal climosequence in the Carpathian mountains

In an era of climate change, understanding the factors that impact root systems can improve our understanding of carbon cycling in forest ecosystems. The study objective was to determine the impact of climatic conditions on the biomass and morphology of roots of different tree species along an elevation gradient, and consequently on properties of montane forest soils. The study plots were established at three different elevations (600, 800 and 1000 m a.s.l.) along a slope with an inclination of 15°. The research plots were located in a beech stand ( Fagus sylvatica L.) and fir stand ( Abies alba Mill.). Soil samples were collected from each study plot, for which basic physical and chemical properties were determined. Additionally, we determined the morphology, production and decomposition rate of fine roots. Our analyses confirmed the significance of climatic conditions in the formation of soil properties, in particular the amount of accumulated carbon and nitrogen content. A decrease of root biomass and reduced root growth were recorded with increasing elevation. The characteristics of roots were linked with the properties of the studied mountain soils, in particular pH, alkaline cation content and content of selected micronutrients. Limitation of root growth in higher elevations affected both study species. Additional research into the formation of tree root morphology is needed, especially in mountainous regions where changes may occur more dynamically. This will provide a better understanding of how stands can cope with different types of environmental stress. • 1.Climatic conditions affect the properties of mountain forest soils and shape the biomass and root morphology. • As a result of climate conditions the decomposition process of organic residues decreases in higher position. • The conditions for the development of root system are deteriorated in higher position of altitude gradient. • Beech shows greater adaptability to changing environmental conditions.

Anthropological impacts determine the soil fungal distribution of Mediterranean oak stands

Quercus pyrenaica-dominated forests are very widely distributed in Mediterranean ecosystems. Traditional forest use, such as coppicing to obtain firewood or livestock grazing under silvopastoral systems, and the current social abandonment of the rural environment have given rise to forest structures of different ages and at different stages of development. Thus, on the one hand, there are large areas of Q. pyrenaica coppice systems that produce a large amount of biomass that have a very high risk of driving forest fires. On the other hand, dehesas, which have very low tree density and are composed of very old trees that are susceptible to different types of environmental stress and have serious regeneration problems and a weak phytosanitary status. In addition, previous studies have suggested that the production of economically valuable edible mushrooms is negatively impacted by silvicultural management. To determine the effects of land management on these ecosystems, we analyzed the soil fungal communities associated with coppice stands (i.e., high-density coppice), high forest stands (i.e., low-density coppice that received silvicultural management 15 years ago to reduce the risk of wildfire), and old stands (i.e., dehesas) to assess their potential ecological roles in their conservation and the diversity of edible mushrooms. We also analyzed the edaphic variables associated with these systems (carbon, pH and the carbon/nitrogen ratio) to understand the dynamics of these fungal communities. We observed two distinguishable communities: pathogen-, parasite-, and endophyte-dominated dehesas and saprotroph- and ectomycorrhizal (ECM)-dominated coppice stands, with a mixed composition in high forest stands. ECM fungi correlated with stand age and structure, showing higher richness levels in high forest stands, particularly ECM fungi with short hyphal exploration type. Finally, the influence of stand age and structure due to land management significantly affected the variety of some edible genera, such as Boletus, Tuber or Terfezia.

Differences in the Seed Germination of Leymus chinensis (Poaceae) Ecotypes Reveal Distinct Strategies for Coping With Salinity Stress: A Common Garden Experiment

Soil salinity is important abiotic stress affecting various ecosystems worldwide such as grassland. Distinct ecotypes often evolve within species by natural selection to facilitate adaptation to different types of environmental stress. Leymus chinensis is a perennial rhizomatous grass that is widely distributed in the eastern Eurasian steppe; it has two main ecotypes, namely, yellow-green (YG) and gray-green (GG), which differ in their strategy for coping with salinity stress. Few studies have examined the seed germination of the two ecotypes under salinity stress. In this study, the seed germination and seedling growth of two ecotypes of L. chinensis in response to different levels of salinity (NaCl) stress [0 (control), 20, 50, 100, and 200 mM] were examined. Then, ungerminated seeds were placed under normal conditions to evaluate seedling growth following exposure to salt stress (i.e., regermination). The germination percentage was significantly higher, and the mean germination time was significantly shorter in the GG ecotype than in the YG ecotype at all NaCl concentrations. As the salinity level increased, the radicle length of the two ecotypes decreased; however, GG had longer radicles and a higher number of radicles, even at 200 mM NaCl when no radicle protruding from the seed coat was detected in YG. The shoot length of GG was significantly longer than that of YG at all NaCl levels. After salinity stress was removed, the seed germination percentage increased as the original concentration of NaCl applied increased, but the total germination percentage did not significantly differ among NaCl concentrations. The total seed germination percentage of GG was approximately 80%, whereas that of the YG was approximately 20%. The seedling length of regerminated seeds for both GG and YG was similar. The thousand-grain weight of GG was significantly higher than that of YG. GG was more salt-tolerant than YG and might be better capable of surviving in harsher environments, suggesting that GG might be particularly useful for saline grassland restoration.

Mimicking prophage induction in the body: induction in the lab with pH gradients.

The majority of bacteria within the human body are lysogens, often harboring multiple bacteriophage sequences (prophages) within their genomes. While several different types of environmental stresses can trigger or induce prophages to enter into the lytic cycle, they have yet to be fully explored and understood in the human microbiota. In the laboratory, the most common induction method is the DNA damaging chemical Mitomycin C. Although pH has been listed in the literature as an induction method, it is not widely used. Here, we detail a protocol for prophage induction by culture under different pH conditions. We explored the effects of pH on prophage induction in bacterial isolates from the bladder, where the pH is well documented to vary significantly between individuals as well as between healthy individuals and individuals with urinary tract symptoms or disease. Using this protocol, we successfully induced phages from seven bladder E. coli strains. Testing conditions and stressors appropriate to the environment from which a lysogen is isolated may provide insight into community dynamics of the human microbiota.

Probiotics in Food Systems: Significance and Emerging Strategies Towards Improved Viability and Delivery of Enhanced Beneficial Value.

Preserving the efficacy of probiotic bacteria exhibits paramount challenges that need to be addressed during the development of functional food products. Several factors have been claimed to be responsible for reducing the viability of probiotics including matrix acidity, level of oxygen in products, presence of other lactic acid bacteria, and sensitivity to metabolites produced by other competing bacteria. Several approaches are undertaken to improve and sustain microbial cell viability, like strain selection, immobilization technologies, synbiotics development etc. Among them, cell immobilization in various carriers, including composite carrier matrix systems has recently attracted interest targeting to protect probiotics from different types of environmental stress (e.g., pH and heat treatments). Likewise, to successfully deliver the probiotics in the large intestine, cells must survive food processing and storage, and withstand the stress conditions encountered in the upper gastrointestinal tract. Hence, the appropriate selection of probiotics and their effective delivery remains a technological challenge with special focus on sustaining the viability of the probiotic culture in the formulated product. Development of synbiotic combinations exhibits another approach of functional food to stimulate the growth of probiotics. The aim of the current review is to summarize the strategies and the novel techniques adopted to enhance the viability of probiotics.

Variation of Microbial Communities in Aquatic Sediments under Long-Term Exposure to Decabromodiphenyl Ether and UVA Irradiation

Abiotic components create different types of environmental stress on bacterial communities in aquatic ecosystems. In this study, the long-term exposure to various abiotic factors, namely a high-dose of the toxic chemical decabromodiphenyl ether (BDE-209), continuous UVA irradiation, and different types of sediment, were evaluated in order to assess their influence on the bacterial community. The dominant bacterial community in a single stress situation, i.e., exposure to BDE-209 include members of Comamonadaceae, members of Xanthomonadaceae, a Pseudomonas sp. and a Hydrogenophaga sp. Such bacteria are capable of biodegrading polybrominated diphenyl ethers (PBDEs). When multiple environmental stresses were present, Acidobacteria bacterium and a Terrimonas sp. were predominant, which equipped the population with multiple physiological characteristics that made it capable of both PBDE biodegradation and resistance to UVA irradiation. Methloversatilis sp. and Flavisolibacter sp. were identified as representative genera in this population that were radioresistant. In addition to the above, sediment heterogeneity is also able to alter bacterial community diversity. In total, seventeen species of bacteria were identified in the microcosms containing more clay particles and higher levels of soil organic matter (SOM). This means that these communities are more diverse than in microcosms that contained more sand particles and a lower SOM, which were found to have only twelve identifiable bacterial species. This is the first report to evaluate how changes in bacterial communities in aquatic sediment are affected by the presence of multiple variable environmental factors at the same time.

Expressions of autophagy-associated ATG genes in response to fusarium wilt infection in banana

Host and pathogens have to cope with different types of environmental stresses during their developmental processes. Autophagy regulates programmed cell death as a response to pathogen infection and is emerging as key a defense module in host-pathogen interactions. The current study focuses on the differential pattern of expression of autophagy (ATG) genes in two contrasting banana genotypes, upon infection with fungal pathogen Fusarium Oxysporum f.sp. cubense (Foc1). The expression analyses of twelve ATG genes responding to biotic stress were investigated in the contrasting genotypes “Calcutta-4” (tolerant) and “Kadali” (susceptible). All the 12 ATG genes were upregulated in both contrasting genotypes, upon disease progression. After Foc1 infection, it was observed that the susceptible genotype “Kadali” showed an enhanced expression at 3dpi, in comparison to the tolerant genotype. An increased and sustained expression of ATG genes in tolerant genotype “Calcutta-4” at 10dpi was also observed suggesting accelerated defense response, under Foc1 infection, indicating an important role of autophagy in disease tolerance to regulate programmed cell death which is a key component of plant immunity response. The present survey suggests that both increased and sustained higher expression of ATG genes during disease progression, imparts tolerance to Foc1 in banana.

Improvement of Drought Tolerance in Rice (Oryza sativa L.): Genetics, Genomic Tools, and the WRKY Gene Family.

Drought tolerance is an important quantitative trait with multipart phenotypes that are often further complicated by plant phenology. Different types of environmental stresses, such as high irradiance, high temperatures, nutrient deficiencies, and toxicities, may challenge crops simultaneously; therefore, breeding for drought tolerance is very complicated. Interdisciplinary researchers have been attempting to dissect and comprehend the mechanisms of plant tolerance to drought stress using various methods; however, the limited success of molecular breeding and physiological approaches suggests that we rethink our strategies. Recent genetic techniques and genomics tools coupled with advances in breeding methodologies and precise phenotyping will likely reveal candidate genes and metabolic pathways underlying drought tolerance in crops. The WRKY transcription factors are involved in different biological processes in plant development. This zinc (Zn) finger protein family, particularly members that respond to and mediate stress responses, is exclusively found in plants. A total of 89 WRKY genes in japonica and 97 WRKY genes in O. nivara (OnWRKY) have been identified and mapped onto individual chromosomes. To increase the drought tolerance of rice (Oryza sativa L.), research programs should address the problem using a multidisciplinary strategy, including the interaction of plant phenology and multiple stresses, and the combination of drought tolerance traits with different genetic and genomics approaches, such as microarrays, quantitative trait loci (QTLs), WRKY gene family members with roles in drought tolerance, and transgenic crops. This review discusses the newest advances in plant physiology for the exact phenotyping of plant responses to drought to update methods of analysing drought tolerance in rice. Finally, based on the physiological/morphological and molecular mechanisms found in resistant parent lines, a strategy is suggested to select a particular environment and adapt suitable germplasm to that environment.

Endophytic Fungi Piriformospora indica Mediated Protection of Host from Arsenic Toxicity.

Complex intercellular interaction is a common theme in plant-pathogen/symbiont relationship. Cellular physiology of both the partners is affected by abiotic stress. However, little is known about the degree of protection each offers to the other from different types of environmental stress. Our current study focused on the changes in response to toxic arsenic in the presence of an endophytic fungus Piriformospora indica that colonizes the paddy roots. The primary impact of arsenic was observed in the form of hyper-colonization of fungus in the host root and resulted in the recovery of its overall biomass, root damage, and chlorophyll due to arsenic toxicity. Further, fungal colonization leads to balance the redox status of the cell by adjusting the antioxidative enzyme system which in turn protects photosynthetic machinery of the plant from arsenic stress. We observed that fungus has ability to immobilize soluble arsenic and interestingly, it was also observed that fungal colonization restricts most of arsenic in the colonized root while a small fraction of it translocated to shoot of colonized plants. Our study suggests that P. indica protects the paddy (Oryza sativa) from arsenic toxicity by three different mechanisms viz. reducing the availability of free arsenic in the plant environment, bio-transformation of the toxic arsenic salts into insoluble particulate matter and modulating the antioxidative system of the host cell.

Mortality, fecundity and development among bed bugs (Cimex lectularius) exposed to prolonged, intermediate cold stress.

BACKGROUNDBed bugs (Cimex lectularius L.) have returned as a nuisance pest worldwide. Their ability to withstand different types of environmental stress should be explored in order potentially to increase the efficiency of control methods.RESULTSImmediate and long‐term effects of exposure to temperatures from 0 to −10 °C for 1, 2 and 3 weeks are reported. Fifth‐instar nymphs and adults were exposed to constant or fluctuating temperatures. Increased cold and extended time yielded higher mortality; nymphs were more resilient than adults at the shorter durations of exposure. At intermediate temperatures, mortality was higher at constant compared with fluctuating temperatures, whereas all individuals died after 3 weeks of exposure to −7 °C. The success among survivors after cold treatment was also affected in terms of reduced egg production, hatching success and the ability of fifth‐instar nymphs to advance into the adult stage; however, nymphs produced after cold treatment developed normally.CONCLUSIONSDetrimental effects of prolonged exposure to low temperatures were seen in bed bugs both during and after cold treatment. The results suggest that temperatures below −7 °C can be applied by laymen to control this pest in small items if available treatment time is of less concern. © 2016 The Authors. Pest Management Science published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry.

The Role of Trehalose for the Stabilization of Proteins.

Understanding of how the stabilization mechanism of trehalose operates on biological molecules against different types of environmental stress could prove to gain great advancements in many different types of conservation techniques, such as cryopreservation or freeze-drying. Many theories exist that aim to explain why trehalose possesses an extraordinary ability to stabilize biomolecules. However, all of them just explain parts of its mechanism and a comprehensive picture is still lacking. In this study, we have used differential scanning calorimetry (DSC) and viscometry measurements to determine how the glass transition temperature Tg, the protein denaturation temperature Tden, and the dynamic viscosity depend on both the trehalose and the protein concentration in myoglobin-trehalose-water systems. The aim has been to determine whether these physical properties are related and to gain indirect structural insights from the limits of water crystallization at different concentration ratios. The results show that for systems without partial crystallization of water the addition of protein increases Tg, most likely due to the fact that the protein adsorbs water and thereby reduces the water content in the trehalose-water matrix. Furthermore, these systems are generally decreasing in Tden with an increasing protein concentration, and thereby also an increasing viscosity, showing that the dynamics of the trehalose-water matrix and the stability of the native structure of the protein are not necessarily coupled. We also infer, by analyzing the maximum amount of water for which ice formation is avoided, that the preferential hydration model is consistent with our experimental data.

DNA methylation dynamics in plants and mammals: overview of regulation and dysregulation.

DNA methylation is a major epigenetic marking mechanism regulating various biological functions in mammals and plant. The crucial role of DNA methylation has been observed in cellular differentiation, embryogenesis, genomic imprinting and X-chromosome inactivation. Furthermore, DNA methylation takes part in disease susceptibility, responses to environmental stimuli and the biodiversity of natural populations. In plant, different types of environmental stress have demonstrated the ability to alter the archetype of DNA methylation through the genome, change gene expression and confer a mechanism of adaptation. DNA methylation dynamics are regulated by three processes de novo DNA methylation, methylation maintenance and DNA demethylation. These processes have their similarities and differences between mammals and plants. Furthermore, the dysregulation of DNA methylation dynamics represents one of the primary molecular mechanisms of developing diseases in mammals. This review discusses the regulation and dysregulation of DNA methylation in plants and mammals. Copyright © 2016 John Wiley & Sons, Ltd.

Enhancement of Antioxidant Enzymes Activities, Drought Stress Tolerances and Quality of Potato Plants as Response to Algal Foliar Application.

Different types of environmental stress may induce several physiological, biochemical and molecular responses in several crop plants. According to a patent study, several types of low antioxidant defense compounds and the activity of various antioxidant defense enzymes are induced in plants grown under various biotic and abiotic stress factors. In this work, the responses of potatoes plant treated with algae extract to drought stress were examined by evaluating the crop yield of tuber, cellular biological compounds (total carbohydrates and proteins), mineral composition and enzyme and non-enzyme antioxidant systems and total oxidative compounds. The yield of tuber, concentration of low antioxidant defense compounds (glutathione, ascorbate, carotenoids, total phenol, flavonoids and tocopherols) and the activity of various antioxidant defense enzymes (catalase CAT; peroxidase POD; ascorbate peroxidase APX and superoxide dismutase SOD) in tuber of treated potato plants with algae extract were significantly increased compared with that in non-treated plants. In addition, essential elements: Fe, K, Ca, Mg and P were accumulated at high concentration in treated plant than that in untreated plants. The screening of antioxidant activity of the ethanolic extract of tubers potatoes treated with algae extracts using the di-(phenyl)-(2,4,6- trinitrophenyl) iminoazanium radical (DPPH) assay radical-scavenging showed an appreciable reduction of the stable radical DPPH with an IC50 of 75 µg/ml. The results suggest that the algae foliar extracts application can improve non-enzymatic and enzymatic antioxidant defense systems in potatoes plant cultivated under drought stress conditions, and it may be recommended for application in arid and semiarid regions.

Pseudomonas putida KT2440 Strain Metabolizes Glucose through a Cycle Formed by Enzymes of the Entner-Doudoroff, Embden-Meyerhof-Parnas, and Pentose Phosphate Pathways

The soil bacterium Pseudomonas putida KT2440 lacks a functional Embden-Meyerhof-Parnas (EMP) pathway, and glycolysis is known to proceed almost exclusively through the Entner-Doudoroff (ED) route. To investigate the raison d'être of this metabolic arrangement, the distribution of periplasmic and cytoplasmic carbon fluxes was studied in glucose cultures of this bacterium by using (13)C-labeled substrates, combined with quantitative physiology experiments, metabolite quantification, and in vitro enzymatic assays under both saturating and non-saturating, quasi in vivo conditions. Metabolic flux analysis demonstrated that 90% of the consumed sugar was converted into gluconate, entering central carbon metabolism as 6-phosphogluconate and further channeled into the ED pathway. Remarkably, about 10% of the triose phosphates were found to be recycled back to form hexose phosphates. This set of reactions merges activities belonging to the ED, the EMP (operating in a gluconeogenic fashion), and the pentose phosphate pathways to form an unforeseen metabolic architecture (EDEMP cycle). Determination of the NADPH balance revealed that the default metabolic state of P. putida KT2440 is characterized by a slight catabolic overproduction of reducing power. Cells growing on glucose thus run a biochemical cycle that favors NADPH formation. Because NADPH is required not only for anabolic functions but also for counteracting different types of environmental stress, such a cyclic operation may contribute to the physiological heftiness of this bacterium in its natural habitats.

Circadian regulation of abiotic stress tolerance in plants.

Extremes of temperatures, drought and salinity cause widespread crop losses throughout the world and impose severe limitations on the amount of land that can be used for agricultural purposes. Hence, there is an urgent need to develop crops that perform better under such abiotic stress conditions. Here, we discuss intriguing, recent evidence that circadian clock contributes to plants’ ability to tolerate different types of environmental stress, and to acclimate to them. The clock controls expression of a large fraction of abiotic stress-responsive genes, as well as biosynthesis and signaling downstream of stress response hormones. Conversely, abiotic stress results in altered expression and differential splicing of the clock genes, leading to altered oscillations of downstream stress-response pathways. We propose a range of mechanisms by which this intimate coupling between the circadian clock and environmental stress-response pathways may contribute to plant growth and survival under abiotic stress.

The S. cerevisiae SUMO stress response is a conjugation-deconjugation cycle that targets the transcription machinery.

SUMO is a ubiquitin-like protein with a number of important biological functions. Increased levels of sumoylation are associated with a number of human diseases, and previous reports have described an evolutionarily conserved "SUMO stress response" (SSR), in which SUMO conjugate levels are markedly increased in response to environmental stresses. However, the connection between cellular stress and sumoylation has remained poorly understood. Here we conduct the first in-depth characterization of the S. cerevisiae SSR. The SUMO system components required to effect it are identified, and SSR kinetics in response to different types of environmental stresses are established. Using mass spectrometry, we identify the principle osmotic shock-associated SSR targets as components of the basal transcription machinery, transcriptional regulators and chromatin remodeling complexes. Consistent with these data, we also observe that the sumoylation of SSR targets is dependent upon, and thus appears to be coupled with, transcription. Together, our data suggest that the SSR is not responsive to environmental stress per se, but more likely reflects a synchronized, transcription-coupled wave of sumoylation that accompanies the rapid, global re-programming of transcription in response to stress. This article is part of a Special Issue entitled: Protein dynamics in health and disease. Guest Editors: Pierre Thibault and Anne-Claude Gingras.

The bacterial translation stress response.

Throughout their life, bacteria need to sense and respond to environmental stress. Thus, such stress responses can require dramatic cellular reprogramming, both at the transcriptional as well as the translational level. This review focuses on the protein factors that interact with the bacterial translational apparatus to respond to and cope with different types of environmental stress. For example, the stringent factor RelA interacts with the ribosome to generate ppGpp under nutrient deprivation, whereas a variety of factors have been identified that bind to the ribosome under unfavorable growth conditions to shut-down (RelE, pY, RMF, HPF and EttA) or re-program (MazF, EF4 and BipA) translation. Additional factors have been identified that rescue ribosomes stalled due to stress-induced mRNA truncation (tmRNA, ArfA, ArfB), translation of unfavorable protein sequences (EF-P), heat shock-induced subunit dissociation (Hsp15), or antibiotic inhibition (TetM, FusB). Understanding the mechanism of how the bacterial cell responds to stress will not only provide fundamental insight into translation regulation, but will also be an important step to identifying new targets for the development of novel antimicrobial agents.