Differences In Species Composition Research Articles

Shotgun metagenomic analysis of microbiota dynamics during long-term backslopping fermentation of traditional fermented milk in a controlled laboratory environment

Traditional fermented milks are produced through an inoculation process that involves the deliberate introduction of microorganisms that have been adapted and perpetuated across successive generations. However, the changes in the microbiota of traditional fermented milk during long-term inoculation fermentation in a laboratory environment remain unclear. In this study, we collected 5 samples of traditional fermented milk samples from 5 different counties in Tibet (3 kurut products) and Xinjiang (2 tarag products) of China, which served as starter cultures for a 9-mo continuous inoculation fermentation experiment. We analyzed the inter- and intra-population variations in the microbial communities of the collected samples, representing their macrodiversity and microdiversity, using shotgun metagenomic sequencing. Across all samples, we obtained a total of 186 high-quality metagenomic-assembled genomes, including 7 genera and 13 species with a relative abundance of more than 1%. The majority of these genomes were annotated as Lactobacillus helveticus (60.46%), Enterococcus durans (9.52%), and Limosilactobacillus fermentum (6.23%). We observed significant differences in species composition and abundance among the 5 initial inoculants. During the long-term inoculation fermentation, we found an overall increasing trend in species diversity, composition, and abundances of carbohydrate metabolism module-encoding genes in the fermented milk bacterial metagenome, while the fermented milk virome exhibited a relatively narrow range of variation. Lactobacillus helveticus, a dominant species in traditional fermented milk, displayed high stability during the long-term inoculation fermentation. Our study provides valuable insights for the industrial production of traditional fermented milk.

Ecological Restoration Increases the Diversity of Understory Vegetation in Secondary Forests: An Evidence from 90 Years of Forest Closures

Ecological restoration and biodiversity are currently hot issues of global environmental concern. However, knowledge about the specific impacts of restoration duration on understory vegetation diversity remains limited. Therefore, this study comprehensive employed a spatial approach to compare the differences in understory plant diversity and species composition among secondary forests with varying ecological restoration ages (0, 10, 30, 60, and 90-year-old stands) in Huangfu Mountain National Forest Park. This methodology allowed us to clarify the key factors affecting the composition of the understory plant community and investigate the regulatory mechanisms influencing changes in understory plant diversity. The results showed that shrub Shannon’s index value, shrub evenness, herb Shannon’s index value, herb richness, and herb evenness were significantly affected by the years of restoration, with 10 years and 90 years being the highest and 60 years being the lowest. Substrate diversity was the main factor influencing plant diversity in the shrub layer. Overstory richness, soil C/N, soil C, soil N, soil bacterial Observed OTUs, soil bacterial Chao1, soil bacterial Pielou_e, and substrate diversity were the drivers of plant diversity in the herb layer. Overstory evenness had a direct effect (0.256) and an indirect effect (0.284) on herb evenness through light availability and fungal Simpson’s index value. Light availability directly negatively affected herb evenness (−0.360). In addition, 52.6% of the factors affecting the herb evenness index were from the arboreal layer evenness, light availability, and fungal Simpson’s index value. To sum up, moderate disturbance of the understory environment of natural secondary forests can be carried out after 10 years of restoration, which is more conducive to the increase of understory plant diversity. This comprehensive study provides a theoretical basis for formulating ecological restoration measures for secondary forests, particularly in understanding the optimal timing and nature of disturbance in the restoration process, reassuring the audience about the validity and reliability of the findings.

Structure of Reef Fish Families (Butterflyfishes and Angelfishes) at Isolated Oceanic Reefs in the Indian Ocean: Christmas Island and the Cocos (Keeling) Islands

There has been substantial research on the factors that structure reef fish assemblages, but this has mostly focused on nearshore or continental reefs. This study examines patterns of abundance and species composition for two iconic groups of coral reef fishes, angelfishes (family Pomacanthidae) and butterflyfishes (family Chaetodontidae) at two isolated, oceanic reefs in the Indian Ocean: Christmas Island and the Cocos (Keeling) Islands. Six explanatory variables were investigated to determine whether large-scale physical factors are more important than fine-scale biotic factors in structuring reef fish communities on oceanic islands. For angelfishes, depth was the factor that most explained patterns in abundance (explaining 46.5% of the variation), species richness (44.8%) and composition (15.3%), with both abundance and species richness being greater at 20 m than at 5 m. Differences in species composition were greater between depths than between islands. For butterflyfishes, variation in abundance and species richness was best explained by the difference in aspect or exposure among sites, though abundance and composition also differed significantly between Christmas Island and the Cocos (Keeling) Islands. Large-scale variation in the structure of these reef fish assemblages could not be explained based on differences in habitat diversity, or coral and algal cover. This study indicates that large-scale physical factors (island location, exposure, depth) are more important than fine-scale biotic factors in structuring reef fish assemblages on oceanic islands.

Composition and temporal dynamics of the phytoplankton community in Laizhou Bay revealed by microscopic observation and rbcL gene sequencing

Laizhou Bay, a major breeding ground for economic marine organisms in the northern waters of China, is facing rapid environmental degradation. In this study, field surveys in this area were conducted in the spring, summer, and autumn of 2020. Microscopic observation and RuBisCO large subunit (rbcL) gene analysis were employed to understand the community structure and temporal dynamics of phytoplankton. The phytoplankton community structures detected by the two methods showed significant differences. Microscopic observation revealed the dominance of dinoflagellates in spring that shifted to the dominance of diatoms in summer and autumn. However, rbcL gene sequencing consistently identified diatoms as dominant throughout all three seasons, with their relative abundance showing an increasing trend. Conversely, the relative abundance of the second- and third-most abundant taxa, namely, haptophytes and ochrophytes, decreased as the seasons transitioned. rbcL gene sequencing annotated more species than microscopy. It could detect haptophytes and cryptophytes, which were overlooked by microscopy. In addition, rbcL gene sequencing detected a remarkable amount of Thalassiosira profunda, which was previously unidentified in this sea area. However, it appeared to underestimate the contribution of dinoflagellates considerably, with most taxa being only identified through microscopic identification. The two methods jointly identified 28 harmful algal bloom taxa with similar detection quantities but substantial differences in species composition. Phytoplankton communities were influenced by temperature, salinity, and nutrients. The results of this work suggest that a combination of multiple techniques is necessary for a comprehensive understanding of phytoplankton.

Differential interactions of Rickettsia species with tick microbiota in Rh. sanguineus and Rh. turanicus

Tick-borne rickettsioses, caused by Gram-negative bacteria of the Rickettsia genus, pose a growing global threat, with various arthropod vectors contributing to their transmission. Understanding the complex interactions within tick microbiota, including the role of Rickettsia species, is crucial for elucidating the dynamics of rickettsial diseases. Here, we investigate the taxonomic profiles and co-occurrence networks of Rickettsia in Rh. sanguineus sensus lato (s.l.) and Rh. turanicus ticks, revealing significant differences in community composition and local connectivity of Rickettsia species. While the microbiota of both tick species share common taxa, distinct differences in relative abundance and network topology suggest unique ecological niches. Moreover, robustness analysis demonstrates varying resilience to perturbations, indicating different strategies for network organization. Our findings also highlight metabolic differences between tick species, suggesting potential implications for Rickettsia interactions. Overall, this study provides insights into the intricate microbial landscape within ticks, shedding light on the functional redundancy and metabolic pathways associated with Rickettsia, thus advancing our understanding of tick-borne diseases.

Vascular epiphytes of the South America Dry Diagonal: characterising their occurrence and richness in this neglected region

ABSTRACT The South America Dry Diagonal (SADD) is the most extensive and continuous portion of dry vegetation on the continent, characterised by lower rainfall and a marked dry season. Epiphytes are very poorly known and understudied in this area, even though they represent a high proportion of plant diversity in South America. Here, we compiled a dataset of epiphyte records from the SADD. The compiled epiphyte records date from 1859 to 2021, covering all four SADD domains, four countries, and 24 ecoregions. We utilised two databases for life form classification: Epilist and Brazil Flora Group. Our dataset contains 41,039 records distributed among 1119 epiphyte and hemiepiphyte species belonging to three main groups: angiosperms, ferns, and lycophytes. The SADD domains host a high number of unique species in each domain, with the Cerrado and Caatinga regions serving as primary hosts for the majority of species in the SADD dataset. Despite notable differences in species composition among domains, the least significant differences were observed between the Caatinga and Cerrado, as well as between the Chaco and the Pantanal. Orchidaceae, Bromeliaceae, and Polypodiaceae families exhibited the highest species diversity within the region. However, the species containing the highest number of specimens collected varied considerably among the domains. Herein, we also outlined some inconsistencies in the life-form classification across taxonomic bases, acknowledging the challenges of categorising epiphyte species while considering their intraspecific life-form variation.

Patterns and drivers of pollen co‐transport network structure vary across pollinator functional groups

Abstract The patterns and drivers of pollen transport on insect bodies can have important consequences for plant reproductive success and floral evolution; however, they remain little studied. Recently, pollinator bodies have been further described as pollen competitive arenas, where pollen grains can compete for space, with implications for the evolution of pollen dispersal strategies and plant community assembly. However, the identity, strength, and diversity of pollen competitive interactions and how they vary across pollinator functional groups is not known. Evaluating patterns and drivers of the pollen co‐transport landscape and how these vary across different pollinator groups is central to further our understanding of floral evolution and co‐flowering community assembly. Here, we integrate information on the number and identity of pollen grains on individual insect pollen loads with network analyses to uncover novel pollen co‐transport networks and how these vary across pollinator functional groups (bees and bee flies). We further evaluate differences in pollen load size, species composition, diversity and phylogenetic diversity among insect groups and how these relate to body size and gender. Pollen co‐transport networks were diverse and highly modular in bees, with groups of pollen species interacting more often with each other on insect bodies. However, the number, identity and frequency of competitors that pollen grains encounter on insect bodies vary between some pollinator functional groups. Other aspects of pollen loads such as their size, richness and phylogenetical diversity were shaped by bee size or gender, with females carrying larger but less phylogenetically diverse pollen loads than males. Synthesis. Our results show that the number, identity and phylogenetic relatedness of pollen competitors changes as pollen grains travel on the body of different pollinators. As a result, pollinator groups impose vastly different interaction landscapes during pollen transport, with so far unknown consequences for plant reproductive success, floral evolution and community assembly.

Germplasm Resource Status and Seed Adaptability of Nypa fruticans Wurmb, an Endangered Species in China

Nypa fruticans, commonly known as the Nipa palm, belongs to the true mangrove plants of the Arecaceae family. In China, it is naturally distributed only on Hainan Island and designated as a second-class National Key Protected Wild Plants List. Field research and indoor simulation experiments were systematically employed to study the resource status of N. fruticans and the adaptation of seed germination to environmental factors. The results showed that: (1) Four natural populations of N. fruticans, approximately 9319 trees within a total area of 3.96 hm2, were distributed in Haikou, Wenchang, Qionghai, and Wanning on Hainan Island. Only the Wanning population was developed in small patches, while other populations were scattered sporadically. (2) A total of 23 mangrove species belonged to 19 genera in 13 families, which were recorded in all study sites, of which 18 were true mangroves and 5 were semi-mangrove species. The vertical structures of 4 N. fruticans communities exhibited the consistent pattern, characterized by distinct layers including the tree, shrub, and herb layers. However, notable differences in species composition and dominant species were observed among the layers of each community. (3) The population dynamics of N. fruticans in Haikou, Qionghai, and Wanning were declining, while the population in Wenchang was growing. (4) Seed germination of N. fruticans was not resistant to strong light and required some shade treatment with an optimal light intensity of 60%. The suitable salinity range for seed germination was 0‰ to 10‰. With the increase of salinity, the germination rate and seedling rate showed an increasing and then decreasing trend with maximum values of 63.3% and 50.0% at 5‰, which showed the sensitivity of seed germination to salinity, with low salinity promoting germination whereas high salinity inhibiting germination. Around 8 h/d of flooding time was most suitable for the seed germination, and 10 h/d was a critical flooding time. This study provides a theoretical basis for population recovery, resource utilization, and other further research of N. fruticans.

Recovering connectivity through restoration corridors in a fragmented landscape in the magdalena river’s valley in Colombia

Forest fragmentation is one of the main drivers of global biodiversity loss leading to the isolation of wildlife populations. This study focuses on understanding the role of restoration corridors as a strategy promoting resilience and viability of mammal and bird populations in a fragmented landscape in Colombia. We installed 98 camera-trap stations − 8497 camera-trap days - in four different land cover categories: (1) forest fragments, (2) natural corridors, (3) stablished corridors and (4) pastures. We evaluated if restoration corridors do promote connectivity for large vertebrates and recover species richness and functional diversity lost in anthropogenically transformed pastures. We used indices of taxonomic and functional diversity and a non-metric multidimensional scaling to evaluate the influence of land cover over mammal and bird communities. Both, species richness and functional diversity have higher values in forests, followed by natural corridors and corridors and lower values in open pastures. Differences in species composition were greater between forests and pastures, and species composition of restoration corridors begins to resemble that of riparian forests and forest fragments. Our results provide initial evidence on the role of restoration corridors as an efficient strategy aimed to recover biodiversity and functional diversity in pervasively fragmented landscapes.

A trait-based approach to quantify ecosystem services delivery potentials in the Sundarbans mangrove forest of Bangladesh

An ecosystem’s potential to deliver goods and services, primarily determined by the functional traits of the species, is crucial for assessing its health and conservation value. This study uses a trait-based approach to evaluate the spatial and temporal variation in the ecosystem services delivery potentials (ESDPs) of the Sundarbans mangrove. We analyzed abundance data from 81 permanent sample plots (PSPs), spread over different saline zones, collected between 1986 and 2014, paired with species-specific plant functional traits. Seventeen traits were examined, with species-level data sourced from secondary literature, linking traits to ecosystem services. Study revealed that plant height, specific leaf area, and root length are key traits for assessing ESDPs. The Sundarbans’ ESDPs varied spatially across different saline zones but remained stable over time. Notably, ESDPs were significantly higher in low saline zones compared to ESDPs in high saline zones. This spatial variation is partly explained by differences in plant species composition among saline zones and the relatively stable species composition over time. Results from mixed effect models showed that PSP as a random factor for all four models is attributed to the nested effect. The study highlights the value of functional traits in ecosystem service assessments, providing a robust method to predict how changes in biodiversity and environmental conditions affect service delivery. The observed trend of decreasing ESDPs with increasing salinity offers insights into the potential impacts of sea-level rise on mangrove forest functions. These findings are essential for developing conservation strategies and policies to preserve the Sundarbans’ ecological integrity and support local livelihoods. This research advocates for a trait-based framework as a critical tool for the sustainable management of mangrove ecosystems globally.

Taxonomic and Functional Diversity of Reptiles in a Heterogeneous Landscape of Jalisco State, West-Central Mexico

Reptiles are threatened by anthropogenic landscape transformation, largely due to agriculture. However, ecosystems nowadays constitute a matrix of fragmented landscapes. We analyzed a heterogeneous landscape’s reptile taxonomic and functional diversity patterns across ten land cover/use types in Jalisco state, in west-central Mexico. At the alpha diversity level, we assessed the taxonomic diversity using q-order indices, and functional diversity with multidimensional indices (FRic, FDiv, and FEve) by land cover/use. We evaluated the differences in species composition among land cover/use types (beta diversity). We utilized multidimensional distance-based analyses (dbRDA) to evaluate the association between reptile diversity, habitat structure, and environmental variables. Species richness did not correlate with functional richness across land cover types overall, except for riparian habitat surrounded by crops (RH-C), which exhibited higher species richness and functional diversity. Secondary vegetation surrounded by temperate forest (SV-TF), riparian habitat surrounded by tropical dry forest (RH-TDF), and RH-C were the land cover/use types with the most functional groups. Herbaceous cover is crucial for preserving both reptile diversity facets in this landscape. These findings suggest that the availability of resources (e.g., riparian habitat and herbaceous cover) regardless of perturbation level could be more relevant for reptile diversity than the condition (tropical vs. temperate) due to the high plasticity and adaptation of the group. It is essential to recognize the ecological value of these habitats by adopting a holistic approach that values the intrinsic and ecological importance of reptile diversity.

Intertidal and shallow subtidal marine tardigrades from the British Virgin Islands with a description of a new Batillipes (Heterotardigrada: Batillipedidae)

This is the first survey of marine tardigrades from the British Virgin Islands, though two species were previously reported from St. Croix, U.S. Virgin Islands. In June 2016, we collected subtidal and intertidal sand samples from various locations throughout the British Virgin Islands. We found 602 tardigrades in 18 of 21 samples, and these included 12 taxa, one of which, Batillipes wyedeleinorum sp. nov., is new to science and described here. We compared abundance and species diversity in intertidal and subtidal samples and found significantly greater abundance in intertidal habitats but no significant difference in the number of observed species between the two habitats. We calculated Chao 1 species richness, which indicated higher estimated richness in intertidal habitats and 15 ± 3.7 species (x̅ ± SD) in both habitats combined. Non-metric Multidimensional Scaling revealed differences in species composition between the two habitats with some species showing clear preferences for one or the other.

Subfossil rodents and tenrecs of Children’s Cave, Madagascar

ABSTRACT Madagascar is famous for its exceptional present and past diversity, yet its Holocene small mammal fauna remains poorly documented. In this work we present the first taxonomic study of the Children’s Cave rodent and tenrec subfossil assemblages collected by Forsyth Major as early as 1895 near Antsirabe in the Central Highlands. We found five rodent species, three endemic and two non-native, as well as six species of tenrecids. This assemblage represents one of the earliest records of Rattus rattus and Mus musculus in the Central Highlands of Madagascar. It is also the first record of Macrotarsomys bastardi in that region, a species that does not currently occur there, and which may indicate a slight environmental change with more bush and forest at the time of the site formation. We find that the native and invasive subfossil specimens do not differ in size and morphology from modern representatives, except for Macrotarsomys. Some proportional differences in rodent taxa are evident between the two Central Highland subfossil assemblages of Children’s Cave and the nearby site of Lavajaza, as well as differences in rodent and tenrecid species composition from other sites in southern parts of Madagascar. Therefore, we are unable to draw any conclusions about the contemporaneity of the Lavajaza and Children’s Cave assemblages nor can we attempt to estimate the relative age of the subfossil fauna.

Drivers of β-diversity and its component-dependence along the natural restoration in an extremely heterogeneous forest ecosystem

β-diversity usually refers to species turnover along a gradient or changes in species diversity between communities. It is a key concept in understanding the mechanisms of biodiversity pattern formation. However, the component dependence and the driving factors of β-diversity during natural restoration remain unclear. In this study, a series of forest dynamic plots (FDPs) were established through the natural restoration stages in degraded karst forests, including the shrub-canopy mixed forest stage (SC), the secondary-growth forest stage (SG), and the old-growth forest stage (OG). After comparing species composition during natural restoration and its dependence on species turnover and nestedness, it was found that natural restoration significantly influenced the species composition by altering the species turnover in degraded karst forests rather than the nestedness. The contribution of turnover to β-diversity gradually increased, while the contribution of nestedness decreases gradually. Furthermore, the PER-SIMPER method was used to quantify the first-order assembly process that drives variations in species composition during restoration stages. To identify the factors influencing β-diversity, both variation partitioning analysis and a random forest model were employed. The results suggested that differences in species compositions across restoration stages were mainly driven by stochastic processes, and the deterministic processes were strengthened during the natural restoration. In addition, topographic factors contributed more to β-diversity than soil nutrient factors. This study highlighted changes in component dependence of degraded karst forests during natural restoration and emphasized the importance of a more comprehensive framework in assessing the restoration of degraded forest ecosystems. More attention should be paid to topographic structure in understanding biodiversity patterns, especially in highly heterogeneous forest ecosystems.

Diversity of arthropods subservient to olive groves in arid region (Northeastern Algeria)

Olea europaea L. 1753, is one of the oldest and most distinctive trees in the Mediterranean region. Its nutritional, social, cultural, and economic value is very important for populations in arid regions, where it is widely distributed. A sign of a sustainable environment in many agricultural regions is the existence of a wide variety and abundance of arthropod groups. The main objective of the study is to evaluate the diversity of arthropods subservientin in olive agro-systems in the arid region by using several sampling techniques, namely classic sight hunting, visual inspection, Barber pots, and yellow traps. The inventory is carried out over a period of 5 months, from February to June 2023, in three stations in M’Sila (northeastern Algeria). Three classes of arthropods were found: Insecta, Arachnida, and Malacostraca. Captures were numerically dominated by Insecta, representing 96.88% of total captures. Arachnida and Malacostraca classes represented about 2.74 and 0.38%, respectively. During this research, a total of 1861 arthropod individuals were collected and identified into 83 species, 79 genera, 53 families, and 15 orders. The most abundant orders were: Diptera (42.56%), Hymenoptera (28.11%), and Coleoptera (7.32%). However, we found a significant difference in species composition according to habitat (P 0.01). The species were determined, and the ecological indices were calculated (Shannon Value, Evenness values and Simpson reciprocal index). The dominant functional feeding groups were phytophages (41.91 %), predators (32.94%), and polyphages (22.14%). The arthropods included several olive pests such as Euphyllura olivina (Costa) (Hemiptera: Liviidae), Bactrocera oleae (Rossi) (Diptera: Tephritidae), Prays oleae (Bernard) (Lepidoptera: Praydidae), Liothrips oleae Costa (Thysanoptera: Phlaeothripidae), and Oxycenus maxwelli (Keifer) (Arachnida: Eriophyidae). Keywords: diversity, arthropods, pests, olive grove, species richness, arid land.

Passive Restoration Achieved through Natural Processes over 70 Years in the Korean DMZ

The Korean Demilitarized Zone (DMZ) is an area where human disturbance has been strictly restrained for about seven decades since 1953. As a result, compared with rural and urban areas in Korea with similar ecological conditions, the landscape structure of the Korean DMZ today shows a big difference in that it has a riparian forest and lacks any of the artificial landscape elements, such as agricultural and residential areas. The vegetation maps made in the 1950s and those made in recent years of a model site that extends throughout the DMZ, the Civilian Control Zone (CCZ), and adjacent rural areas show that successional changes in the DMZ and CCZ areas are remarkable, while changes in the rural areas are not clear. Rice fields have been replaced by riparian forests, whereas young forests in areas previously subjected to excessive use and pine forests have been replaced by broad-leaved forests. Among the three landscape elements that changed, it was found that riparian zones, where natural disturbance is usually frequent, could mitigate the impacts of human disturbance and restore the original features of nature sooner than any other elements. The results of analyses on landscape change that focused on rice fields before the Korean War also showed similar results: most of these fields had turned into riparian vegetation. Stand ordination of riparian vegetation investigated in the CCZ, rural areas, and urban areas showed clear differences in species composition and diversity among regions. In this study, we confirmed the passive restoration of the Korean DMZ and CCZ through natural regeneration processes as a result of restricted human disturbance over a period of about seven decades.

Seasonality and relative abundance within an elasmobranch assemblage near a major biogeographic divide.

Nearshore waters are utilized by elasmobranchs in various ways, including foraging, reproduction, and migration. Multiple elasmobranch species have been previously documented in the nearshore waters of North Carolina, USA, which has a biogeographic break at Cape Hatteras on the Atlantic coast. However, comprehensive understanding of the elasmobranch community in this region is still lacking. Monthly year-round trawling conducted along two ocean transects (near Cape Lookout and Masonboro Inlet in 5 to 18 m depth) in Onslow Bay, North Carolina provided the opportunity to examine the dynamics and seasonal patterns of this community using a multivariate approach, including permutational multivariate analysis of variance and nonparametric BIO-ENV analysis. From November 2004 to April 2008, 21,149 elasmobranchs comprised of 20 species were caught, dominated by spiny dogfish (Squalus acanthias) and clearnose skate (Rostroraja eglanteria). All species exhibited seasonal variation in abundance, but several key species contributed the most to seasonal differences in species composition within each transect. Spiny dogfish was most abundant in the winter at both locations, comprised mainly of mature females. Although clearnose skate was caught in all seasons, the species was most abundant during the spring and fall. Atlantic sharpnose (Rhizoprionodon terraenovae) was one of the most abundant species in the summer, and two distinct size cohorts were documented. Temperature appeared to be the main abiotic factor driving the community assemblage. The extensive year-round sampling provided the ability to better understand the dramatic seasonal variation in species composition and provides new information on the relative abundance of several understudied elasmobranch species that may be of significant ecological importance. Our results underscore the importance of inner continental shelf waters as important elasmobranch habitat and provide baseline data to examine for future shifts in timing and community structure at the northern portion of the biogeographic break at Cape Hatteras.

Scale Effects of Individual Tree Thinning in Chinese Fir Plantations

Thinning is a crucial approach to the near-natural conversion of plantations, contributing to the sustainability of forest management. However, over a rotation, the effects of thinning on tree growth, structure, and species diversity, as well as their scale-dependent outcomes, remain unclear. Ten years after conducting individual tree thinning in a Chinese fir (Cunninghamia lanceolata (Lamb.) Hook.) monoculture in southwest China, we analyzed the thinning effects within the influence zone (r = 0–2.5 m) centered around stumps and center trees. The results indicate that (1) individual tree thinning did not significantly promote the increment of diameter at breast height, volume, and biomass of Chinese fir. The four nearest Chinese fir around stumps and center trees were in a state of random distribution, high mixing, and dominance; (2) individual tree thinning significantly promoted the formation of species abundance and richness at r = 2–2.5 m. With increased scale, more species were found, leading to increased stability in diameter and species distribution. Linear and nonlinear relationships between diameter classes, mingling, and dominance became more stable; (3) later-coming populations within both modes exhibited a common characteristic of random distribution, high mixing, and disadvantage at each scale, but with significant differences in species composition (kj = 0.22–0.61). These results suggest that individual tree thinning has limited impacts on the growth and structure of retained trees in Chinese fir plantations but significantly enhances the formation of species diversity, demonstrating scale effects. This underscores the feasibility of individual tree thinning in the near-natural conversion of plantations.

Estructura comunitaria de peces, asteroideos y equinoideos en el Farallón de San Ignacio, arrecife situado en la “brecha faunística de Sinaloa”, México

Even though there is extensive research on the rocky reefs in the Gulf of California, some areas still have scarce information, such as the Farallón de San Ignacio, which is well known for its high biodiversity and its location in the biogeographic transition zone known as the "Sinaloa gap." Due to the limited information available for this site, the present study aimed to describe the composition and structure of asteroid and echinoid fish assemblages at the Farallón de San Ignacio. For this purpose, visual surveys were conducted in November 2016 using belt transects of 25 m long by 4 m wide for fish and 25 m long by 2 m wide for invertebrates, to estimate species abundance, richness, diversity, and evenness indices, and to compare them with other rocky reefs located at the same latitude on the western coast of the Gulf of California that were visited the same year. A total of 34 species were recorded, including two asteroids and four echinoids. The most abundant species were the fish Azurina atrilobata, the starfish Phataria unifacialis, and the sea urchin Diadema mexicanum. Despite the Farallón’s isolation, the complexity of its community structure is similar to that of other islands in the Gulf of California, although there were differences in species composition due to the high abundance of herbivorous species at this site.

Higher tree species richness and diversity in urban areas than in forests: Implications for host availability for invasive tree pests and pathogens

Urban and forest trees provide valuable ecosystem services. However, they are increasingly threatened by invasive forest pests and pathogens. Trees in urban areas are often the first potential hosts non-native tree-feeding insects and tree pathogens (“pests”) encounter after introduction in a novel region. If the trees encountered are suitable hosts, these pests can establish and become invasive – eventually also in surrounding forests. Here, we compared tree species and genus composition between urban areas and surrounding forests and examined the implications for host availability for forest pests and potential effects on invasibility. We compiled and standardised 26 urban tree inventories, containing ∼ 500.000 individual trees. We used multivariate analyses to compare urban tree composition with forest tree composition from forests surrounding each municipality (10 km radius), derived from the Swiss National Forest Inventory. With > 1300 different tree species, species richness of urban trees was 17 times higher than species richness in surrounding forests. Linear models and multivariate analyses revealed that host availability for forest quarantine pests is significantly higher in urban areas than in forests, with large differences in host suitability for different quarantine pests between urban and forest tree assemblages. This indicates that differences in species composition in urban and forest trees can result in increased host availability, possibly facilitating the establishment of quarantine forest pests.