Generalist Diet Research Articles

Temporal shifts in avian phenology across the circannual cycle in a rapidly changing climate: A global meta‐analysis

AbstractThe alteration of the timing of biological events is one of the best documented effects of climate change, with overwhelming evidence across taxa. Many studies have investigated the phenology of consumers, especially birds. However, most of these studies have focused on specific phenophases, whereas a global analysis of avian phenological trends during recent climate change across different phases of the circannual cycle is still lacking. Here, we performed a comprehensive meta‐analytic synthesis of the phenological responses (temporal shifts in days year−1) of birds across different phenophases (prebreeding migration, breeding, and postbreeding migration) by summarizing more than 5500 time series from 684 species from five continents during 1811–2018. Our results confirm that avian taxa have advanced prebreeding migration and breeding by ~2–3 days per decade, whereas no significant temporal changes in the timing of postbreeding migration were documented. Advancement in the timing of prebreeding migration and breeding strongly depended on migratory behavior, with the advance being the weakest for long‐distance migrants and the strongest for resident species. Diet generalists and primary consumers tended to advance prebreeding migration timing more than species with different dietary specializations. Increasing body size resulted in a larger advancement in the onset (but not in the mean date) of prebreeding migration and breeding, whereas phenological advances were larger in the northern than in the southern hemisphere. Our synthesis, covering most of the world, highlighted previously unappreciated patterns in avian phenological shifts over time, suggesting that specific life‐history or ecological traits may drive different responses to climate change.

Individual and population-scale carbon and nitrogen isotopic values of Procambarusclarkii in invaded freshwater ecosystems.

Freshwater ecosystems are amongst the most threatened habitats on Earth; nevertheless, they support about 9.5% of the known global biodiversity while covering less than 1% of the globe's surface. A number of anthropogenic pressures are impacting species diversity in inland waters and, amongst them, the spread of invasive alien species is considered one of the main drivers of biodiversity loss and homogenisation in freshwater habitats.Crayfish species are widely distributed freshwater invaders and, while alien species introductions occur mostly accidentally, alien crayfish are often released deliberately into new areas for commercial purposes. After their initial introduction, crayfish species can rapidly establish and reach high-density populations as a result of their adaptive functional traits, such as their generalist diet.The Louisiana crayfish Procambarusclarkii (Girard, 1852) is globally considered one of the worst invaders and its impact on recipient freshwater communities can vary from predation and competition with native species, to modification of food webs and habitat structure and introduction of pathogens. Native to the south United States and north Mexico, P.clarkii has been introduced in Europe, Asia and Africa, determining negative ecological and economic impacts in the majority of invaded habitats where it became dominant within the receiving benthic food webs. Due to its flexible feeding strategy, P.clarkii exerts adverse effects at different trophic levels, ultimately affecting the structure and dynamics of invaded food webs. It is, therefore, paramount to evaluate the ecological consequences of P.clarkii invasion and to quantify its impact in a spatially explicit context. In the past decades, the analysis of stable isotopes of carbon, nitrogen and other elements has become a popular methodology in food web ecology. Notably, stable isotope analysis has emerged as a primary tool for addressing applied issues in biodiversity conservation and management, such as the assessment of the trophic ecology of non-indigenous species in invaded habitats. Here, we built two geo-referenced datasets, resolved respectively at the population and individual scale, by collating information on δ13C and δ15N values of P.clarkii within invaded inland waters. The population-scale dataset consists of 160 carbon and nitrogen isotopic values of the Louisiana crayfish and its potential prey, including living and non-living primary producers and benthic invertebrates. The dataset resolved at individual scale consists of 1,168 isotopic records of P.clarkii. The isotopic values included within the two datasets were gathered from 10 countries located in Europe, Asia, Africa and North America, for a total of 41 studies published between 2005 and 2021. To the best of the authors' knowledge, this effort represents the first attempt to collate in standardised datasets the sparse isotopic information of P.clarkii available in literature. The datasets lend themselves to being used for providing a spatially explicit resolution of the trophic ecology of P.clarkii and to address a variety of ecological questions concerning its ecological impact on recipient aquatic food webs.

Impact of invading species on biodiversity: Diet study of the green whip snake’s (Hierophis viridiflavus, L. 1789) in Switzerland

Next-generation sequencing is increasingly used in conservation biology to resolve complex interactions between species, either diet or gut parasites studies. We applied a recent long metabarcoding method to elucidate the green whip snake’s (Hierophis viridiflavus) prey consumption based on DNA extracted from stomach contents. Illegally introduced in Canton of Vaud (Switzerland), three populations of the green whip snake have strongly developed in two regions, East (Chablais) and North. We suspect that this introduced species is threatening part of the local herpetofauna, especially the Asp viper and the Western green lizard in this region. Consequently, an extermination program has been implemented from 2016 to mitigate Hierophis viridiflavus expansion and its impact arising from its generalist diet. Stomach contents of 94 individuals removed from introduction sites were analysed by long metabarcoding. Our study revealed the consumption of 67 prey belonging to 9 species, primarily small mammals and reptiles. The recurrent presence of two parasitic nematodes was also discovered. Although cannibalistic behaviour could not be highlighted with this approach, a scavenging behaviour was suspected based on the presence of an insect used in forensic entomology (Calliphora vicina). These results confirm the opportunistic feeding behaviour of Hierophis viridiflavus and its ability to predate on threatened species. Although 86.6 % of preys were not listed on the Swiss Red List, the impact on the Asp viper population can be important (up to 20 % of consumed preys) and could partially explain its strong decline.

Craniomandibular osteology of Manidens condorensis (Ornithischia: Heterodontosauridae) from the upper Lower Jurassic of Argentina

ABSTRACT Heterodontosauridae is a clade that appears early in the ornithischian fossil record, and includes small-bodied, highly specialized species characterized by an unusual heterodont dentition. Although known from relatively few taxa, the early representation of the clade and unsolved phylogenetic relationships within heterodontosaurids and among early ornithischians implies that novel information has a marked effect on broader phylogenetic hypotheses and our understanding of early diversification patterns within Ornithischia. This paper describes the cranial osteology of the heterodontosaurid Manidens condorensis based on computed micro-tomographic scans of MPEF-PV 3211 and MPEF-PV 3809. This enabled more detailed descriptions of previously recognized bones, corrections to the literature, and the identification of undescribed elements. We present a new skull reconstruction and propose an emended diagnosis in light of novel anatomical information. Areas of jaw muscle attachment were identified and compared with Heterodontosaurus and Lesothosaurus, and mandibular function among heterodontosaurids is discussed. Our results indicate that diverse skull morphologies and functions existed among Early Jurassic ornithischians, with Manidens being intermediate between the plesiomorphic cranial shape and function associated with a generalist diet in ornithischians such as Tianyulong and Lesothosaurus, and the more derived cranial construction specialized for herbivory identified in heterodontosaurids from South Africa such as Heterodontosaurus.

First published record of rodent predation by guira cuckoo in Brazil: notes about vertebrate predation

Guira cuckoo (Guira guira) is a communal breeder bird species displaying a diversified diet. In this study, we report the first published predation event of a rodent by Guira cuckoo in Brazil. We searched for vertebrate predation by this bird species in Brazilian domains in the following databases: Google Scholar, SciELO, Scopus and Web of Science. We recorded the rodent predation event in a landscape composed of pasture and gallery forest in Campo Grande municipality, Mato Grosso do Sul, central-west Brazil. The predated rodent is a vesper mouse, Calomys sp. We found 19 vertebrate species predated by the Guira cuckoo, distributed in all Brazilian domains, within the orders: Anura (5 species), Passeriformes (1), Squamata (12), and Rodentia (1 - present study). Our result contributes to the natural history of the Guira cuckoo, and highlights that this cuckoo bird displays a generalist diet, feeding on a diversity of vertebrate species.

Minimal overall divergence of the gut microbiome in an adaptive radiation of Cyprinodon pupfishes despite potential adaptive enrichment for scale-eating.

Adaptive radiations offer an excellent opportunity to understand the eco-evolutionary dynamics of gut microbiota and host niche specialization. In a laboratory common garden, we compared the gut microbiota of two novel derived trophic specialist pupfishes, a scale-eater and a molluscivore, to closely related and distant outgroup generalist populations, spanning both rapid trophic evolution within 10 kya and stable generalist diets persisting over 11 Mya. We predicted an adaptive and highly divergent microbiome composition in the trophic specialists reflecting their rapid rates of craniofacial and behavioral diversification. We sequenced 16S rRNA amplicons of gut microbiomes from lab-reared adult pupfishes raised under identical conditions and fed the same high protein diet. In contrast to our predictions, gut microbiota largely reflected phylogenetic distance among species, rather than generalist or specialist life history, in support of phylosymbiosis. However, we did find significant enrichment of Burkholderiaceae bacteria in replicated lab-reared scale-eater populations. These bacteria sometimes digest collagen, the major component of fish scales, supporting an adaptive shift. We also found some enrichment of Rhodobacteraceae and Planctomycetia in lab-reared molluscivore populations, but these bacteria target cellulose. Overall phylogenetic conservation of microbiome composition contrasts with predictions of adaptive radiation theory and observations of rapid diversification in all other trophic traits in these hosts, including craniofacial morphology, foraging behavior, aggression, and gene expression, suggesting that the functional role of these minor shifts in microbiota will be important for understanding the role of the microbiome in trophic diversification.

Contrasting Trophic Niche and Resource Use Dynamics Across Multiple American Horseshoe Crab (Limulus polyphemus) Populations and Age Groups

AbstractHorseshoe crabs (Limulus polyphemus) exhibit ontogenetic and geographic variability in migratory patterns, yet the implications of movement on their resource use dynamics remain poorly understood. Here, we evaluate horseshoe crab resource use across ontogeny (instars 14–18 and adults), sex, seasons, and between two spatially distinct populations that exhibit different migratory patterns. Multi-tissue stable isotope analyses of carbon, nitrogen, and sulfur were used to examine (1) ontogenetic and sex-specific variability in the reliance of resource pools; (2) variation in isotopic niche breadth within and among populations; and (3) seasonal variability in resource use within juvenile life stages. We found evidence for subtle ontogenetic shifts in resource use, with increased contributions of phytoplankton with ontogeny, but all age groups predominantly relied on sedimentary organic matter (SOM) pools. Sex-specific differences in resource use were observed with SOM serving as the predominant source assimilated in males, while females exhibited a higher dependence on phytoplankton resource pools, indicating foraging or spatial preferences may be different between sexes. Low trophic niche overlap between adult and juvenile horseshoe crabs was evident, likely arising from differences in migratory patterns and size constraints. Within juveniles, no seasonal differences in resource use were observed, indicating that dietary patterns may remain static across temporal scales, consistent with limited dispersal of that life stage. Spatial differences in resource use were, however, observed between adult crabs likely reflecting the migratory strategies of different populations. Our results are consistent with previous evidence that horseshoe crabs are dietary generalists but provide novel insights into the linkages between movement and trophic patterns.

Human food subsidies drive individual specialization and intrapopulation dietary differences in a generalist predator

AbstractGeneralist species can exhibit individual specialization (IS), where individuals adopt specialized foraging behaviors not attributable to age, sex, or social dominance. While IS increases with the diversity of available foraging resources (ecological opportunity), the potential impact of human food subsidies on ecological opportunity is unknown. We quantified the isotopic niche width of Steller's Jays (Cyanocitta stelleri), a synanthropic predator and dietary generalist, across a gradient of human land‐use categories ranging from subsidized (park campgrounds) to unsubsidized (forest interior) habitats in a protected area in California. We asked (1) if isotopic niche width was better predicted by individual foraging behavior than sex, social dominance, or habitat category (indicating IS) and (2) if degree of IS exhibited by jays increased with the availability of human food subsidies. We characterized the isotopic niche space occupied by individual jays relative to the population using carbon (δ13C) and nitrogen (δ15N) isotope values. Using linear models, we found that jay diet variation was best explained by individual behavior and habitat use rather than by sex or social dominance. While the degree of IS increased with the availability of human foods, individual jays exhibited a variety of foraging behaviors in all habitats that were segregated by foraging stratum and use of human foods. Individual diet also determined the degree of specialization, as jays that specialized on human foods had the narrowest niche width regardless of habitat. Management efforts targeted at generalist wildlife exhibiting large degrees of IS should therefore account for the impact of food subsidies on foraging behavior. Approaches that involve aversive conditioning may fail where highly specialized individuals are unlikely to encounter treatments; therefore, we recommend simultaneous efforts to limit human food subsidies (e.g., information campaigns and improved containment of human food and food waste), and deployment across the largest possible extent of foraging microhabitats and substrates in order to ensure exposure of whole populations to emetic eggs.

Generalist diet of Microraptor zhaoianus included mammals

ABSTRACT Gut contents are extremely important for inferring trophic interactions between extinct species. These are, however, very rare in the fossil record and it is not always possible to accurately identify both the carnivore and the consumed organisms. Here we describe the remains of a small fossil mammal foot preserved inside the body cavity of the holotype specimen of the small feathered dinosaur Microraptor zhaoianus. This adds to the known diversity of diet for this genus, which also consumed birds, fish, and lizards. Previous interpretations that Microraptor was an arboreal hunter of birds and adept hunter of fish are not supported. Although the various known stomach contents would be plausible prey items based on size, there is no clear evidence that any of them were predated rather than scavenged, and Microraptor likely did both and foraged in multiple habitats.

Effects of short‐term managed honey bee deployment in a native ecosystem on wild bee foraging and plant–pollinator networks

Abstract Honey bees (Apis mellifera L.) are important agricultural pollinators, and there is increasing demand for forage habitat for managed colonies. However, there is also evidence that pasturing honey bee colonies within natural landscapes may negatively affect wild bees through resource competition. To assess resource competition between managed honey bees and wild bees, we conducted repeated, short‐term deployments of honey bee colonies within Florida forests coinciding with seasonal wildflower bloom, and compared wild bee foraging with and without honey bee colonies present over multiple seasons. We recorded over 2000 bee visits including 196 pairwise bee–plant interactions. Deploying honey bee colonies was associated with a reduction in wild bee foraging rates, and honey bee and wild bee foraging rates were significantly, negatively correlated. Honey bees disproportionately visited resources with high floral density. Honey bee foraging preferences differed significantly from genera with small‐bodied (Lasioglossum, Perdita, Augochlorella), and/or specialist species (Perdita, Andrena), as well as with Megachile, but overlapped with genera including larger‐bodied (Bombus, Habropoda, Osmia, Xylocopa) and/or generalist species (Bombus, Xylocopa, Agapostemon). Deploying honey bee colonies did not significantly affect plant–pollinator network metrics. These results illustrate that short‐term honey bee colony deployment can negatively affect wild bee foraging and that competition may be greater for certain genera, particularly larger‐bodied bees or those with generalist diets though less for smaller‐bodied and/or specialist bees. Our short‐term, low‐density deployment treatments may have precluded significant effects on network metrics and likely underestimate the effects of typical higher density and longer‐term honey bee deployment.

Digging in a 120 years-old lunch: What can we learn from collection specimens of extinct species?

Studying collection specimens is often the only way to unravel information about recent extinctions. These can reveal knowledge on threats and life traits related to extinction, and contribute, by extrapolation, to the conservation of extant species. However, high-throughput sequencing methods have rarely been applied to extinct species to reveal information on their ecology. Insular species are especially prone to extinction. We studied the gut contents of three specimens of the extinct giant skink Chioninia coctei of the Cabo Verde Islands using microscopy and DNA-metabarcoding. The presence of Tachygonetria adult nematodes suggests plants as important diet items. Our metabarcoding approach also identified plants and, additionally, invertebrates, supporting the hypothesis of C. coctei’s generalist diet. The absence of vertebrates in the digestive contents may reflect the decline of seabirds on the Desertas Islands that could have contributed to the debilitation of the giant skink, already depleted by persecution and severe droughts. Even with a small sample size, this study contributes to shedding light on the trophic roles of this enigmatic extinct species and emphasizes the need to develop holistic conservation plans for island threatened taxa. Additionally, it illustrates the potential of integrating up-to-date molecular methods with traditional approaches to studying collection specimens to help to solve ecological puzzles in other ecosystems.

Neo-taphonomic analysis of the Misiam leopard lair from Olduvai Gorge (Tanzania): understanding leopard-hyena interactions in open settings.

Misiam is a modern wildebeest-dominated accumulation situated in a steep ravine covered with dense vegetation at Olduvai Gorge (Tanzania). It is interpreted here as a leopard lair to which carcasses have been transported for several years. Felid-specific bone damage patterns, felid-typical skeletal part profiles, taxonomic specialization and the physical presence of leopards observed by the authors show that leopards at Misiam can be specialized medium-sized carcass accumulators. Hyenas also intervened at intervals in the modification of the retrieved faunal assemblage. This makes Misiam a carnivore palimpsest. Here, we additionally show that leopards only transport and accumulate carcasses on occasions, that they can seem highly specialized despite being dietary generalists, and that such a behaviour may be prompted by seasonal competition or during the breeding season or both. Misiam is the first open-air leopard lair with a dense bone accumulation reported. There, leopards engaged in intensive accumulation of carcasses during the wet season, when the southern Serengeti short-grass plains undergo the effect of the famous wildebeest migration and this migratory species reaches the gorge. The ecological importance of this behaviour and its relevance as a proxy for reconstructing prehistoric carnivore behaviours are discussed.

Trophic guild structure and dietary patterns of a juvenile-dominated demersal fish community in a tropical mangrove estuarine system

Community-wide understanding of food web dynamics in species-rich tropical estuaries are generally lacking, exacerbating the challenges of managing these valuable coastal habitats. To address this gap, trophic guilds and dietary patterns were elucidated for 39 species of a juvenile-dominated demersal estuarine fish community in the Matang Mangrove Forest Reserve, an Important Marine Mammal Area. Fishes were sampled monthly for a year using otter trawl, and stomach contents were analyzed. Of the seven trophic guilds identified from clustering analysis, the three most speciose ones were shrimp feeders (12 species), zooplanktivores (9), and generalist crustacivores (7). Copepods occurred in diets of 50% of all fish species and were the most important food item volumetrically for specialist zooplanktivores. Diverse shrimp and prawn taxa, including commercially valuable Acetes and juvenile penaeids, showed highest frequency of occurrence in stomachs and supported the shrimp feeder and crustacivore guilds that contained relatively more diet generalists. Biomass-dominant annelidivore guild members are known to be a vital food resource for highly threatened coastal cetaceans. Ontogenetic diet shift, wide intra-guild diet breadth, seasonality in major resource use, and prevalence of detritus in diet were feeding strategies that reduced niche overlap and competition among fish species sharing common food resources. Future fisheries management must consider the bottom-up trophic impacts from excessive removal of valuable prey resources such as shrimps on equally valuable fish consumers that depend on them.

Asymmetrical intraguild interactions with coyotes, red foxes, and domestic dogs may contribute to competitive exclusion of declining gray foxes.

Species coexistence is governed by availability of resources and intraguild interactions including strategies to reduce ecological overlap. Gray foxes are dietary generalist mesopredators expected to benefit from anthropogenic disturbance, but populations have declined across the midwestern USA, including severe local extirpation rates coinciding with high coyote and domestic dog occurrence and low red fox occurrence. We used data from a large‐scale camera trap survey in southern Illinois, USA to quantify intraguild spatial and temporal interactions among the canid guild including domestic dogs. We used a two‐species co‐occurrence model to make pairwise assessments of conditional occupancy and detection rates. We also estimated temporal activity overlap among species and fit a fixed‐effects hierarchical community occupancy model with the four canid species. We partitioned the posterior distributions to compare gray fox occupancy probabilities conditional on estimated state of combinations of other species to assess support for hypothesized interactions. We found no evidence of broadscale avoidance among native canids and conclude that spatial and temporal segregation were limited by ubiquitous human disturbance. Mean guild richness was two canid species at a site and gray fox occupancy was greater when any combination of sympatric canids was also present, setting the stage for competitive exclusion over time. Domestic dogs may amplify competitive interactions by increasing canid guild size to the detriment of gray foxes. Our results suggest that while human activities can benefit some mesopredators, other species such as gray foxes may serve as bellwethers for habitat degradation with trophic downgrading and continued anthropogenic homogenization.

Climate and human influence shape the interactive role of the honeybee in pollination networks beyond its native distributional range

Empirical evidence has shown that introduced honeybees, Apis mellifera L., can change the structural organization of ecological networks involving pollinators and flowering plants. In this case, studies have shown that A. mellifera is highly connected within networks (i.e., high interactive role) mainly due to its high abundances, long colony lifetime, generalist diet, and great capacity of spread and adaptation to new environments. However, there is little knowledge on how the interactive role of A. mellifera in these flower-visitor networks changes spatially and the potential correlates of such variation across ecological and geographical gradients worldwide. In this study, we evaluated how native and exotic distribution ranges, local climate, human influence (i.e., anthropogenic disturbance), and latitude shape the interactive role of the honeybee in plant-floral visitor networks globally. To achieve that, we compiled 95 weighted plant-floral visitor networks encompassing ca. 87 degrees of latitude and 227 degrees of longitude across the globe. We found that the interactive role of A. mellifera is higher in its exotic range than in the native distributional range and positively associated with mean annual temperature and precipitation. Further, the interactive role of A. mellifera was high at intermediate values of global human influence and increased with latitude. Our findings help us to understand how different drivers related to rapid global change could affect the capacity of A. mellifera to colonize and increase its impact on other pollinator species in different environments.

Relevance of feeding ecology in the management of invasive species: Prey variability in a novel invasive crab

The diet composition of non-indigenous species (NIS) provides essential information to recognise potential impacts on ecosystems. This study examined the feeding ecology of the novel invasive crab Cronius ruber from demographic and seasonal perspectives. It identified 52 prey items in crab gut contents (n = 278), and more than 18% of the studied specimens had empty guts. The high-frequency prey belonged to Brachyuran (51.54%) and Polychaete (34.36%), followed by Echinidea (22.47%), Gastropoda (21.15%) and Perciformes (20.70%). Additionally, the night sampling showed prey that were not observed in the examined stomach contents. The daily ingestion rates based on polychaeta indicated more prey consumption by juveniles (<55 mm carapace width (CW)) and adults crabs (55 mm–75 mm CW) than the old adults (>75 mm CW). This falls in line with the number of prey items retained in individuals’ guts, which changed seasonally and in ontogenic groups. Moreover, the visual night observations showed that native predators foraged on the invasive crab. These predators were groupers, octopus and elasmobranchs. The seasonal and ontogenic differences observed in diet through the stomach content analysis and daily ingestion rates suggest that C. ruber eats a generalist diet. The dissimilarity analysis suggested possible resource partitioning in ontogenic groups. Our results could represent the baseline for future studies into the possible impacts of this invasive NIS, as well as some arguments to include C. ruber on the list of invasive alien species of European Union concern.

Evolutionary transitions in diet influence the exceptional diversification of a lizard adaptive radiation

BackgroundDiet is a key component of a species ecological niche and plays critical roles in guiding the trajectories of evolutionary change. Previous studies suggest that dietary evolution can influence the rates and patterns of species diversification, with omnivorous (animal and plant, ‘generalist’) diets slowing down diversification compared to more restricted (‘specialist’) herbivorous and carnivorous diets. This hypothesis, here termed the “dietary macroevolutionary sink” hypothesis (DMS), predicts that transitions to omnivorous diets occur at higher rates than into any specialist diet, and omnivores are expected to have the lowest diversification rates, causing an evolutionary sink into a single type of diet. However, evidence for the DMS hypothesis remains conflicting. Here, we present the first test of the DMS hypothesis in a lineage of ectothermic tetrapods—the prolific Liolaemidae lizard radiation from South America.ResultsAncestral reconstructions suggest that the stem ancestor was probably insectivorous. The best supported trait model is a diet-dependent speciation rate, with independent extinction rates. Herbivory has the highest net diversification rate, omnivory ranks second, and insectivory has the lowest. The extinction rate is the same for all three diet types and is much lower than the speciation rates. The highest transition rate was from omnivory to insectivory, and the lowest transition rates were between insectivory and herbivory.ConclusionsOur findings challenge the core prediction of the DMS hypothesis that generalist diets represent an ‘evolutionary sink’. Interestingly, liolaemid lizards have rapidly and successfully proliferated across some of the world’s coldest climates (at high elevations and latitudes), where species have evolved mixed arthropod-plant (omnivore) or predominantly herbivore diets. This longstanding observation is consistent with the higher net diversification rates found in both herbivory and omnivory. Collectively, just like the evolution of viviparity has been regarded as a ‘key adaptation’ during the liolaemid radiation across cold climates, our findings suggest that transitions from insectivory to herbivory (bridged by omnivory) are likely to have played a role as an additional key adaptation underlying the exceptional diversification of these reptiles across extreme climates.

Fossil Bovidae from the Hominini-bearing site of Cooper’s D (Bloubank Valley, South Africa): implications for Paranthropus robustus Broom, 1938 and early Homo Linnaeus, 1758 habitat preferences

The Cooper’s D deposit has been dated by U-Pb at a maximum age of 1.37 Ma ± 0.113 and has yielded seven Hominini remains, six of them are attributed to the Southern African endemic species Paranthropus robustus Broom, 1938. However, the taxonomic composition of the faunal assemblage recovered at this site, especially ruminants, remains poorly understood. This paper updates the previous palaeontological and biochronological works and provides the first taxonomic description and paleoecological analysis of the whole bovid material from Cooper’s D. We propose a minimum age of 1.0 Ma for the Cooper’s D bone accumulation. Thus, we conclude that the assemblage accumulated between 1.375 ± 0.113 and 1.0 Ma based on the complementary results obtained from radiometric dates and biochronology. The paleoecological analysis suggests that Cooper’s D is likewise dominated by grassland with sparse covered habitat and probable water sources in the vicinity. Finally, we show a strong statistically significant negative correlation between the presence of grassland-adapted bovid species and P. robustus. This result indicates that P. robustus was more likely to be an eurytopic species and dietary generalist than an exclusive grazer.

Dietary Specialization and Habitat Shifts in a Clade of Afro-Asian Colubrid Snakes (Colubridae: Colubrinae)

Speciation through niche divergence often occurs as lineages of organisms colonize and adapt to new environments with novel ecological opportunities that facilitate the evolution of ecologically different phenotypes. In snakes, adaptive diversification may be driven by the evolution of traits relating to changes in their diets. Accordingly, habitat-mediated differences in prey available to ancestral snakes as they colonized and occupied novel dynamic landscapes are likely to have been a strong selective agent behind the divergence and radiation of snakes across the globe. Using an ancestral reconstruction approach that considers the multivariate nature of ecological phenotypes while accounting for sampling variation between taxa, we explored how diet and macro-habitat use coevolved across a phylogeny of 67 species of Afro-Asian colubrine snakes. Our results show that the most recent common ancestor of this clade was likely a dietary generalist that occupied tropical forests in Asia. Deviations from this generalist diet to a variety of specialist diets each dominated by the utilization of single prey types repeatedly occurred as ancestral colubrines shifted from tropical forests to savanna and grassland habitats across Africa. We additionally found that dietary specialist species were on average smaller in maximum length than dietary generalists, congruent with established predator-size, prey-diversity dynamics in snakes. We speculate that adaptive divergence in ancestral colubrines arose as a result of a selective regime that favored diets comprised of terrestrial prey, and that partitioning of different prey types led to the various forms of dietary specialization evident in these lineages today. Our findings provide new insights into the ecological correlates associated with the evolution of diet in snakes, thereby furthering our understanding of the driving forces behind patterns of snake diversification.

Genetic variation of macronutrient tolerance in Drosophila melanogaster

Carbohydrates, proteins and lipids are essential nutrients to all animals; however, closely related species, populations, and individuals can display dramatic variation in diet. Here we explore the variation in macronutrient tolerance in Drosophila melanogaster using the Drosophila genetic reference panel, a collection of ~200 strains derived from a single natural population. Our study demonstrates that D. melanogaster, often considered a “dietary generalist”, displays marked genetic variation in survival on different diets, notably on high-sugar diet. Our genetic analysis and functional validation identify several regulators of macronutrient tolerance, including CG10960/GLUT8, Pkn and Eip75B. We also demonstrate a role for the JNK pathway in sugar tolerance and de novo lipogenesis. Finally, we report a role for tailless, a conserved orphan nuclear hormone receptor, in regulating sugar metabolism via insulin-like peptide secretion and sugar-responsive CCHamide-2 expression. Our study provides support for the use of nutrigenomics in the development of personalized nutrition.