Diel Fluctuations Research Articles

How does reach‐scale stream‐hyporheic transport vary with discharge? Insights from rSAS analysis of sequential tracer injections in a headwater mountain stream

AbstractThe models of stream reach hyporheic exchange that are typically used to interpret tracer data assume steady‐flow conditions and impose further assumptions about transport processes on the interpretation of the data. Here we show how rank Storage Selection (rSAS) functions can be used to extract “process‐agnostic” information from tracer breakthrough curves about the time‐varying turnover of reach storage. A sequence of seven slug injections was introduced to a small stream at base flow over the course of a diel fluctuation in stream discharge, providing breakthrough curves at discharges ranging from 0.7 to 1.2 L/s. Shifted gamma distributions, each with three parameters varying stepwise in time, were used to model the rSAS function and calibrated to reproduce each breakthrough curve with Nash‐Sutcliffe efficiencies in excess of 0.99. Variations in the fitted parameters over time suggested that storage within the reach does not uniformly increase its turnover rate when discharge increases. Rather, changes in transit time are driven by both changes in the average rate of turnover (external variability) and changes in the relative rate that younger and older water contribute to discharge (internal variability). Specifically, at higher discharge, the turnover rate increased for the youngest part of the storage (corresponding to approximately 5 times the volume of the channel), while discharge from the older part of the storage remained steady, or declined slightly. The method is shown to be extensible as a new approach to modeling reach‐scale solute transport that accounts for the time‐varying, discharge‐dependent turnover of reach storage.

Survival and settling of larval <i>Macoma balthica</i> in a large-scale mesocosm experiment at different <i>f</i>CO<sub>2</sub> levels

Abstract. Anthropogenic carbon dioxide (CO2) emissions are causing severe changes in the global inorganic carbon balance of the oceans. Associated ocean acidification is expected to pose a major threat to marine ecosystems worldwide, and it is also expected to be amplified in the Baltic Sea where the system is already exposed to relatively large natural seasonal and diel pH fluctuations. We studied the responses of larvae of the benthic key species Macoma balthica to a range of future CO2 scenarios using six ∼ 55 m3 mesocosms encompassing the entire pelagic community. The mesocosms were deployed in the northern Baltic Sea in June 2012. We focused on the survival, growth and subsequent settlement process of Macoma balthica when exposed to different levels of future CO2. The size and time to settlement of M. balthica increased along the CO2 gradient, suggesting a developmental delay. With ongoing climate change, both the frequency and extent of regularly occurring high CO2 conditions are likely to increase, and a permanent pH decrease will likely occur. The strong impact of increasing CO2 levels on early-stage bivalves is alarming as these stages are crucial for sustaining viable populations, and a failure in their recruitment would ultimately lead to negative effects on the population.

Hyporheic exchange controlled by dynamic hydrologic boundary conditions

AbstractThe relative roles of dynamic hydrologic forcing and geomorphology as controls on the timescales and magnitudes of stream‐aquifer exchange and hyporheic flow paths are unknown but required for management of stream corridors. We developed a comprehensive framework relating diel hydrologic fluctuations to hyporheic exchange in the absence of geomorphic complexity. We simulated groundwater flow through an aquifer bounded by a straight stream and hillslope and under time‐varying boundary conditions. We found that diel fluctuations can produce hyporheic flow path lengths and residence times that span orders of magnitude. With these results, hyporheic flow path residence times and lengths can be predicted from the timing and magnitude of diel fluctuations and valley slope. Finally, we demonstrated that dynamic hydrologic boundary conditions can produce spatial and temporal scales of hyporheic flow paths equivalent to those driven by many well‐studied geomorphic features, indicating that these controls must be considered together in future efforts of upscaling to stream networks.

Photosynthetic inorganic carbon acquisition in 30 freshwater macrophytes

Photosynthetic inorganic carbon (Ci) acquisition mechanisms were surveyed in 30 freshwater macrophytes grown under uniform, nutrient-sufficient, low Ci conditions where Ci is a potentially limiting factor on plant photosynthesis. In pH-drift experiments there was evidence for HCO3− use in 21 of the 30 species that were able to raise the solution pH above 10.0. Titratable acidity had distinct diel fluctuations in the leaves of Nechamandra alternifolia, Egeria densa, Vallisneria spinulosa, Deinostema violaceum, and Isoetes sinensis (aerial and submersed), which suggests some degree of Crassulacean Acid Metabolism (CAM) in these species. Incubation of D. violaceum under low Ci conditions substantially increased the amount of acidity and the difference between night and day. The phosphoenolpyruvate carboxylase (PEPC) activity in Hydrilla verticillata, V. spinulosa, E. densa, D. violaceum, Ottelia acuminata, and O. alismoides ranged from 32.4±6.6 to 156.8±5.3μmolmg−1proteinh−1 and the ratio of PEPC to ribulose bisphosphate carboxylase-oxygenase (Rubisco) activity ranged from 1.0 to 2.9. When O. alismoides and D. violaceum were incubated under conditions that greatly reduced daytime Ci, the PEPC activity was around 1.5 times higher than in untreated leaves. A high PEPC to Rubisco activity ratio, and the increased ratio under low Ci conditions, is consistent with a facultative C4 or CAM system. These results indicated that most of the freshwater macrophytes tested can use HCO3− as a carbon source, while O. alismoides, and D. violaceum may possess C4 or CAM characteristics like H. verticillata and I. howellii, and thus are worthy of further study.

Diel Variation in Gene Expression of the CO2-Concentrating Mechanism during a Harmful Cyanobacterial Bloom.

Dense phytoplankton blooms in eutrophic waters often experience large daily fluctuations in environmental conditions. We investigated how this diel variation affects in situ gene expression of the CO2-concentrating mechanism (CCM) and other selected genes of the harmful cyanobacterium Microcystis aeruginosa. Photosynthetic activity of the cyanobacterial bloom depleted the dissolved CO2 concentration, raised pH to 10, and caused large diel fluctuations in the bicarbonate and O2 concentration. The Microcystis population consisted of three Ci uptake genotypes that differed in the presence of the low-affinity and high-affinity bicarbonate uptake genes bicA and sbtA. Expression of the bicarbonate uptake genes bicA, sbtA, and cmpA (encoding a subunit of the high-affinity bicarbonate uptake system BCT1), the CCM transcriptional regulator gene ccmR and the photoprotection gene flv4 increased at first daylight and was negatively correlated with the bicarbonate concentration. In contrast, genes of the two CO2 uptake systems were constitutively expressed, whereas expression of the RuBisCO chaperone gene rbcX, the carboxysome gene ccmM, and the photoprotection gene isiA was highest at night and down-regulated during daytime. In total, our results show that the harmful cyanobacterium Microcystis is very responsive to the large diel variations in carbon and light availability often encountered in dense cyanobacterial blooms.

Examining diel patterns of soil and xylem moisture using electrical resistivity imaging

Summary The feedbacks among forest transpiration, soil moisture, and subsurface flowpaths are poorly understood. We investigate how soil moisture is affected by daily transpiration using time-lapse electrical resistivity imaging (ERI) on a highly instrumented ponderosa pine and the surrounding soil throughout the growing season. By comparing sap flow measurements to the ERI data, we find that periods of high sap flow within the diel cycle are aligned with decreases in ground electrical conductivity and soil moisture due to drying of the soil during moisture uptake. As sap flow decreases during the night, the ground conductivity increases as the soil moisture is replenished. The mean and variance of the ground conductivity decreases into the summer dry season, indicating drier soil and smaller diel fluctuations in soil moisture as the summer progresses. Sap flow did not significantly decrease through the summer suggesting use of a water source deeper than 60 cm to maintain transpiration during times of shallow soil moisture depletion. ERI captured spatiotemporal variability of soil moisture on daily and seasonal timescales. ERI data on the tree showed a diel cycle of conductivity, interpreted as changes in water content due to transpiration, but changes in sap flow throughout the season could not be interpreted from ERI inversions alone due to daily temperature changes.

Green light: gross primary production influences seasonal stream N export by controlling fine-scale N dynamics.

Monitoring nutrient concentrations at fine-scale temporal resolution contributes to a better understanding of nutrient cycling in stream ecosystems. However, the mechanisms underlying fine-scale nutrient dynamics and its implications for budget catchent fluxes are still poorly understood. To gain understanding of patterns and controls of fine-scale stream nitrogen (N) dynamics and to assess how they affect hydrological N fluxes, we explored diel variation in stream nitrate (NO3-) concentration along a headwater stream with increasing riparian area and channel width. At the downstream site, the highest day-night variations occurred in early spring, when stream NO3- concentrations were 13% higher at night than at daytime. Such day-night variations were strongly related to daily light inputs (R2 = 0.74) and gross primary production (GPP; R2 = 0.74), and they showed an excellent fit with day-night NO- variations predicted from GPP (R2 = 0.85). These results suggest that diel fluctuations in stream NO3- concentration were mainly driven by photoautotrophic N uptake. Terrestrial influences were discarded because no simultaneous diel variations in stream discharge, riparian groundwater level, or riparian solute concentration were observed. In contrast to the downstream site, no diel variations in NO3- concentration occurred at the upstream site, likely because water temperature was colder (10 degrees C vs. 12 degrees C) and light availability was lower (4 vs. 9 mol x m(-2) x d(-1)). Although daily GPP was between 10- and 100-fold lower than daily respiration, photoautotrophic N uptake contributed to a 10% reduction in spring NO3- loads at the downstream site. Our study clearly shows that the activity of photoautotrophs can substantially change over time and along the stream continuum in response to key environmental drivers such as light and temperature, and further, that its capacity to regulate diel and seasonal N fluxes can be important even in low-productivity streams.

A novel marine mesocosm facility to study global warming, water quality, and ocean acidification.

We describe a completely randomizable flow-through outdoor mesocosm for climate change and ecotoxicology studies that was built with inexpensive materials. The 16 raceway tanks allow up to 6× water renewal per hour, avoiding changes in natural abiotic seawater conditions. We use an open-source hardware board (Arduino) that was adapted to control heaters and an innovative CO 2 injection system. This system reduced seawater pH up to -0.9 units and increased temperature up to +6°C in three treatments and a control. Treatments can be continuously compared with the control and vary according to diel fluctuations, thus following the diel range observed in the sea. The mesocosm facility also includes an integrated secondary system of 48 aquaria for ecotoxicology studies. We validated the reproducibility and relevance of our experimental system by analyzing the variation of the total DNA of the microbial community extracted from corals in three elevated temperature scenarios during a 40-day experiment. We also present data from temperature, acidification, and copper contamination trials, which allowed continuous, reliable, and consistent treatment manipulations.

Diurnal and nocturnal transcriptomic variation in the Caribbean staghorn coral, Acropora cervicornis.

Reef-building corals experience large diel shifts in their environment, both externally due to changes in light intensity, predator activity and prey availability, and internally as a result of diel fluctuations in photosynthesis by their endosymbiotic algae, Symbiodinium. Diel patterns of tentacle behaviour, skeletal growth and gene expression indicate reactions of the coral animal in response to light and through circadian regulation. Some corals, such as the Caribbean Acroporas, have strong within-colony division of labour, including specialized fast-growing apical polyps, accompanied by large gene expression differences. Here we use RNA-seq to evaluate how diel changes in gene expression vary within the branching Caribbean staghorn coral, Acropora cervicornis, between branch tips and branch bases. Multifactor generalized linear model analysis indicated that 6% (3005) of transcripts were differentially expressed between branch tips and bases, while 1% (441) of transcripts were differentially expressed between day and night. The gene expression patterns of 220 transcripts were affected by both time of day and location within the colony. In particular, photoreceptors, putative circadian genes, stress response genes and metabolic genes were differentially expressed between day and night, and some of these, including Amcry1, tef and hebp2, exhibited location-specific regulation within the coral colony as well. These findings indicate that the genetic response of the coral to day and night conditions varies within the colony. Both time of day and location within the colony are factors that should be considered in future coral gene expression experiments.

Swimming energetics and thermal ecology of adult bonefish (Albula vulpes): a combined laboratory and field study in Eleuthera, The Bahamas

Knowledge of the swimming energetics and thermal ecology of sub-tropical and tropical coastal species is extremely limited, yet this information is critical for understanding animal-environment relation- ships in the face of climate change. Using the ecologi- cally and economically important sportfish, bonefish (Albula vulpes), we determined the critical swimming speed (Ucrit), metabolic rates (M ⋅ O2max and M ⋅ O2routine), scopeforactivity,andcostoftransport(COTnet)acrossa range of temperatures using a swim tunnel. For both critical swimming speed and scope for activity, optimal (Topt) and critical (Tcrit) temperatures were determined. The optimal temperature for Ucrit (96 cm/s) was 28.0 °C and the optimal temperature for scope for activity (7.5 mgO2/min/kg) was 26.7 °C. We also estimated the thermal profile of bonefish in the wild using surgically implanted thermal loggers. Of the 138 implanted fish, eight were recaptured with functional loggers. After 220 days more than 55 % of recaptured tagged fish had expelled their thermal loggers. Thermal profiles revealed that bonefish did not exceed laboratory- determined critical temperatures (i.e., 14.5 °C minima and 37.9 °C maxima) and spent the majority of their time at their critical swimming speed optimal tempera- ture. Nonetheless, fish experienced wide variation in daily temperature—both through time (up to 8 °C diel fluctuation and 14 °C seasonally) and among individ- uals. Collectively, laboratory and field data suggest that bonefish occupy habitats that approach, but rarely ex- ceed (0.51 % of the time) their Tcrit. Bonefish routinely experienced water temperatures in the field that exceeded their Topt (~54 % of the time). Even minor increases in temperature (e.g., 1 °C) in tidal creeks will lead to greater exceedances of Topt and Tcrit or potential- ly reduce access of bonefish to essential feeding areas.

Tamarix transpiration along a semiarid river has negligible impact on water resources

AbstractThe proliferation of saltcedar (Tamarix spp.) along regulated rivers in the western United States has transformed riparian plant communities. It is commonly assumed that transpiration by these alien plants has led to large losses of water that would otherwise contribute to streamflow. Control of saltcedar, therefore, has been considered a viable strategy for conserving water and increasing streamflow in these regions. In an effort to better understand the linkage between transpiration by saltcedar and streamflow, we monitored transpiration, stream stage, and groundwater elevations within a saltcedar stand along the Pecos River during June 2004. Transpiration, as determined by sap flow measurements, exhibited a strong diel pattern; stream stage did not. Diel fluctuations in groundwater levels were observed, but only in one well, which was located in the center of the saltcedar stand. In that well, the correlation between maximal transpiration and minimal groundwater elevation was weak (R2 = 0.16). No effects of transpiration were detected in other wells within the saltcedar stand, nor in the stream stage. The primary reason, we believe, is that the saltcedar stand along this reach of the Pecos River has relatively low sapwood area and a limited spatial extent resulting in very low transpiration compared with the stream discharge. Our results are important because they provide a mechanistic explanation for the lack of increase in streamflow following large‐scale control of invasive trees along semiarid rivers.

Turbulence, Temperature, and Turbidity: The Ecomechanics of Predator-Prey Interactions in Fishes

Successful feeding and escape behaviors in fishes emerge from precise integration of locomotion and feeding movements. Fishes inhabit a wide range of habitats, including still ponds, turbulent rivers, and wave-pounded shorelines, and these habitats vary in several physical variables that can strongly impact both predator and prey. Temperature, the conditions of ambient flow, and light regimes all have the potential to affect predator-prey encounters, yet the integration of these factors into our understanding of fish biomechanics is presently limited. We explore existing knowledge of kinematics, muscle function, hydrodynamics, and evolutionary morphology in order to generate a framework for understanding the ecomechanics of predator-prey encounters in fishes. We expect that, in the absence of behavioral compensation, a decrease in temperature below the optimum value will reduce the muscle power available both to predator and prey, thus compromising locomotor performance, suction-feeding mechanics of predators, and the escape responses of prey. Ambient flow, particularly turbulent flow, will also challenge predator and prey, perhaps resulting in faster attacks by predators to minimize mechanical instability, and a reduced responsiveness of prey to predator-generated flow. Reductions in visibility, caused by depth, turbidity, or diel fluctuations in light, will decrease distances at which either predator or prey detect each other, and generally place a greater emphasis on the role of mechanoreception both for predator and prey. We expect attack distances to be shortened when visibility is low. Ultimately, the variation in abiotic features of a fish's environment will affect locomotion and feeding performance of predators, and the ability of the prey to escape. The nature of these effects and how they impact predator-prey encounters stands as a major challenge for future students of the biomechanics of fish during feeding. Just as fishes show adaptations for capturing specific types of prey, we anticipate they are also adapted to the physical features of their preferred habitat and show a myriad of behavioral mechanisms for dealing with abiotic factors during predator-prey encounters.

Foraging behaviour of the epaulette shark Hemiscyllium ocellatum is not affected by elevated CO2

Abstract Increased oceanic uptake of atmospheric carbon dioxide (CO2) is a threat to marine organisms and ecosystems. Among the most dramatic consequences predicted to date are behavioural impairments in marine fish which appear to be caused by the interference of elevated CO2 with a key neurotransmitter receptor in the brain. In this study, we tested the effects of elevated CO2 on the foraging and shelter-seeking behaviours of the reef-dwelling epaulette shark, Hemiscyllium ocellatum. Juvenile sharks were exposed for 30 d to control CO2 (400 µatm) and two elevated CO2 treatments (615 and 910 µatm), consistent with medium- and high-end projections for ocean pCO2 by 2100. Contrary to the effects observed in teleosts and in some other sharks, behaviour of the epaulette shark was unaffected by elevated CO2. A potential explanation is the remarkable adaptation of H. ocellatum to low environmental oxygen conditions (hypoxia) and diel fluctuations in CO2 encountered in their shallow reef habitat. This ability translates into behavioural tolerance of near-future ocean acidification, suggesting that behavioural tolerance and subsequent adaptation to projected future CO2 levels might be possible in some other fish, if adaptation can keep pace with the rate of rising CO2 levels.

Metabolomic profiling in tomato reveals diel compositional changes in fruit affected by source-sink relationships.

A detailed study of the diurnal compositional changes was performed in tomato (Solanum lycopersicum cv. Moneymaker) leaves and fruits. Plants were cultivated in a commercial greenhouse under two growth conditions: control and shaded. Expanding fruits and the closest mature leaves were harvested during two different day/night cycles (cloudy or sunny day). High-throughput robotized biochemical phenotyping of major compounds, as well as proton nuclear magnetic resonance and mass spectrometry metabolomic profiling, were used to measure the contents of about 70 metabolites in the leaves and 60 metabolites in the fruits, in parallel with ecophysiological measurements. Metabolite data were processed using multivariate, univariate, or clustering analyses and correlation networks. The shaded carbon-limited plants adjusted their leaf area, decreased their sink carbon demand and showed subtle compositional modifications. For source leaves, several metabolites varied along a diel cycle, including those directly linked to photosynthesis and photorespiration. These metabolites peaked at midday in both conditions and diel cycles as expected. However, transitory carbon storage was limited in tomato leaves. In fruits, fewer metabolites showed diel fluctuations, which were also of lower amplitude. Several organic acids were among the fluctuating metabolites. Diel patterns observed in leaves and especially in fruits differed between the cloudy and sunny days, and between the two conditions. Relationships between compositional changes in leaves and fruits are in agreement with the fact that several metabolic processes of the fruit appeared linked to its momentary supply of sucrose.

Nighttime and daytime respiration in a headwater stream

AbstractWe investigated changes in respiration across nighttime and daytime in a headwater stream. For this, we conducted consecutive nighttime and daytime experiments injecting the bioreactive tracer resazurin in two reaches with different riparian canopy densities (different levels of photosynthetically active radiation) to compare respiration rate coefficients. We found that even though stream water temperatures measured above the streambed at day and night (half‐day timescale) were different within each reach and across reaches (95% confidence level), apparent respiration rate coefficients were not different across nighttime and daytime conditions (95% confidence level). A likely explanation for this is that the bulk of stream respiration takes place in the hyporheic zone, where diel fluctuations of stream temperature and photosynthetically active radiation are considerably attenuated and where temperature is not measured in routine investigations of stream metabolism. Our results suggest that community respiration in headwater streams may not need to be ‘corrected’ for temperature between daytime and nighttime, even though instantaneous changes in respiration are expected to occur from a pure biological perspective. Copyright © 2015 John Wiley & Sons, Ltd.

Zinc Uptake from Circumneutral Mine Drainage in Freshwater Biofilms: New Insights from In Vitro Experiments

We present results from in vitro flask and flume experiments using freshwater biofilms sourced and cultivated from a mine-impacted stream in North Yorkshire, UK. Flask experiments showed rapid uptake of Zn from the water column into biofilms. This uptake was not light dependant and suggests that chelation of Zn by negatively charged functional groups in extracellular polymeric substances (EPS) secreted within the biofilm are the key sink for Zn. Solid state analysis of the biofilm from the mesocosm system by scanning electron microscopy highlights the presence of calcite precipitates within the EPS, which may provide another sink for Zn. Long-term monitoring of flume systems showed area-adjusted removal rates of ≈0.2 g Zn m−2 day−1, which is consistent with many other biologically-mediated mine water treatment systems. Diel (24 h) fluctuations in pH and Zn were observed over a 96 h intensive sampling period in the flumes. Practical considerations for establishing and maintaining biofilms under controlled conditions are also highlighted; these include regulation of light intensity and maintenance of flowing, low nutrient status waters.

Variability in Carbon Availability and Eelgrass (Zostera marina) Biometrics Along an Estuarine Gradient in Willapa Bay, WA, USA

Because photosynthesis requires CO2, carbon limitation in aquatic environments could restrict primary production and provide signals in tissue chemistry. We took advantage of spatial variability of aqueous [CO2] in estuaries to examine within-estuary variation in biometrics of intertidal eelgrass (Zostera marina) during peak summer production. As expected from the sensitivity of carbonate equilibria to pH, aqueous [CO2] increased along an ocean-to-river gradient in Willapa Bay, WA, USA. The scale of pH variability also changed, reflecting weather-driven upwelling near the ocean, tidal advection near rivers, and reduced diel fluctuation up-estuary. Z. marina studied at eight sites in the bay integrated across these different temporal fluctuations in water chemistry to exhibit increased tissue carbon and depleted δ13C up-estuary. However, seagrass production did not change as expected from aqueous [CO2]. Instead, small standing biomass occurred at sites with organic-rich sediments or high wave energy, investment in branching showed trends along the estuarine gradient that changed seasonally, and specific growth rates based on leaf extension did not shift with the estuarine gradient or with standing biomass. These results reinforce that estuarine seagrasses are likely to experience modified mean pH and variability due not only to ocean acidification in the strict sense (anthropogenic CO2 absorbed from the atmosphere) but also from land use, upwelling, and feedbacks from biological processes. However, responses via productivity may be less evident than in tissue chemistry.

Effects of Eichhornia crassipes and Ceratophyllum demersum on Soil and Water Environments and Nutrient Removal in Wetland Microcosms

Wetland plants are important components that influence the biogeochemistry of wetland ecosystems. Therefore, remediation performance in wetlands can differ depending on the growth forms of plants. In this study, the effects of Eichhornia crassipes (floating plant) and Ceratophyllum demersum (submerged plant) on the wetland soil and water environments were investigated using a microcosm study with simulated hydrology of retention-type wetlands between rainfall events. The C. demersum microcosm (SP) showed the fastest recovery with a diel fluctuation pattern of dissolved oxygen, pH, and oxidation-reduction potential (ORP) from the impacts of nutrient inflow. Moreover, SP exhibited the lowest decrease in sediment ORP, the highest dehydrogenase activity, and more organic forms of nitrogen and phosphorus. E. crassipes microcosms exhibited the lowest water temperature, and efficiently controlled algae. In the presence of plants, the total nitrogen and phosphorus concentrations in water rapidly decreased, and the composition of organic and inorganic nutrient forms was altered along with a decrease in concentration. The results indicate that wetland plants help retain nutrients in the system, but the effects varied based on the wetland plant growth forms.

High-frequency data within a modeling framework: On the benefit of assessing uncertainties of lake metabolism

We used a Bayesian metabolic model for assessing the gross primary production (GPP), ecosystem respiration (ER) and their uncertainties in lake Võrtsjärv, a large eutrophic lake in Estonia (North-eastern Europe). Diel cycle modeling was based on high-frequency (10-min) measurements of irradiance, water temperature and dissolved oxygen during most of the growing season (from May to August 2011). Posterior distribution of production and respiration was successfully simulated with the model and displayed with highly credible intervals (2.5 and 97.5 percentiles). Considering the mean GPP and ER values, the lake was autotrophic from May to June, at equilibrium in July, and heterotrophic in August. However, adding the uncertainty to metabolism estimates revealed that an ambiguous metabolic state (no clear monthly predominance of auto- or hetero-trophy) represented between 12 and 32% of the period. It is thus incautious to conclude about lake metabolic state in these conditions. A comparison with the existing classical model based on dissolved oxygen measurements showed that metabolic dynamics differed between the two approaches. Though the classical model recorded highest ecosystem productivity in midsummer, the Bayesian model predicted that productivity peaked earlier in the season and gradually declined as the irradiance dropped and the water temperature rose. Coupling between GPP and ER during the whole study period was very variable, resulting that, depending on the month, 50–100% of primary production was consumed in the lake. This coupling variability was caused by extensive diel fluctuation of irradiance-dependent production compared to relatively stable water temperature and respiration. The background respiration was high in spring and declined progressively in summer, reflecting lower inputs of allochthonous organic matter to the lake. With a wider use of high-frequency techniques for measuring lake ecological parameters, this kind of performant models that are able to assess lake productivity within small time steps and take into account the uncertainty, will be increasingly needed in the future.

Estimating the size of the spawning population and evaluating environmental controls on migration for a critically endangered Asian salmonid, Sakhalin taimen

Sakhalin taimen Parahucho perryi, an east Asian fish noted to be one of the largest salmonids in the world, is threatened throughout its range in northern Japan and neighboring Russian Federation. We report here on the first effort to enumerate and characterize the spawning run of a river population. We applied sonar and video methods in a tributary of the Sarufutsu River in Hokkaido, Japan, and evaluated environmental controls on migration. Over two years we estimated the tributary population to range from 335 to 425. We found passage rate by our site to increase with temperature and decrease with river discharge, and migratory cues were reinforced by strong diel fluctuations in environmental conditions. Finally, we report evidence of males arriving early to the spawning grounds in this species. Given our results and data on the recreational fishery, we conclude that a substantial number of individuals in the population are affected by angling, underscoring the need to establish fishing regulations. Further, our study indicates passage success can vary over the migration period, and efforts at modifying or removing impediments, and devoting more research to factors controlling passage, could ultimately improve the status of this species.