Diatom Chaetoceros Research Articles

Active Displacement of a Unique Diatom–Ciliate Symbiotic Association

Adaptive movement in response to individual interactions represents a fundamental evolutionary solution found by both unicellular organisms and metazoans to avoid predators, search for resources or conspecifics for mating, and engage in other collaborative endeavors. Displacement processes are known to affect interspecific relationships, especially when linked to foraging strategies. Various displacement phenomena occur in marine plankton, ranging from the large-scale diel vertical migration of zooplankton to microscale interactions around microalgal cells. Among these symbiotic interactions, collaboration between the centric diatom Chaetoceros coarctatus and the peritrich ciliate Vorticella oceanica is widely known and has been recorded in several studies. Here, using 2D and 3D tracking records, we describe the movement patterns of the non-motile, chain-forming diatoms (C. coarctatus) carried by epibiotic ciliates (V. oceanica). The reported data on the Chaetoceros–Vorticella association illustrated the consortium’s ability to generate distinct motility patterns. We established that the currents generated by the attached ciliates, along with the variability in the contraction and relaxation of ciliate stalks in response to food concentration, resulted in three types of trajectories for the consortium. The characteristics of these distinct paths were determined using robust statistical methods, indicating that the different displacement behaviors allowed the consortium to adequately explore distributed resources and remain within the food-rich layers provided in the experimental containers. A simple mechanical–stochastic model was successfully applied to simulate the observed displacement patterns, further supporting the proposed mechanisms of collective response to the environment.

Structural basis for molecular assembly of fucoxanthin chlorophyll a/c-binding proteins in a diatom photosystem I supercomplex

Photosynthetic organisms exhibit remarkable diversity in their light-harvesting complexes (LHCs). LHCs are associated with photosystem I (PSI), forming a PSI-LHCI supercomplex. The number of LHCI subunits, along with their protein sequences and pigment compositions, has been found to differ greatly among the PSI-LHCI structures. However, the mechanisms by which LHCIs recognize their specific binding sites within the PSI core remain unclear. In this study, we determined the cryo-electron microscopy structure of a PSI supercomplex incorporating fucoxanthin chlorophyll a/c-binding proteins (FCPs), designated as PSI-FCPI, isolated from the diatom Thalassiosira pseudonana CCMP1335. Structural analysis of PSI-FCPI revealed five FCPI subunits associated with a PSI monomer; these subunits were identified as RedCAP, Lhcr3, Lhcq10, Lhcf10, and Lhcq8. Through structural and sequence analyses, we identified specific protein–protein interactions at the interfaces between FCPI and PSI subunits, as well as among FCPI subunits themselves. Comparative structural analyses of PSI-FCPI supercomplexes, combined with phylogenetic analysis of FCPs from T. pseudonana and the diatom Chaetoceros gracilis, underscore the evolutionary conservation of protein motifs crucial for the selective binding of individual FCPI subunits. These findings provide significant insights into the molecular mechanisms underlying the assembly and selective binding of FCPIs in diatoms.

Structural basis for molecular assembly of fucoxanthin chlorophyll a/c-binding proteins in a diatom photosystem I supercomplex.

Photosynthetic organisms exhibit remarkable diversity in their light-harvesting complexes (LHCs). LHCs are associated with photosystem I (PSI), forming a PSI-LHCI supercomplex. The number of LHCI subunits, along with their protein sequences and pigment compositions, has been found to differ greatly among the PSI-LHCI structures. However, the mechanisms by which LHCIs recognize their specific binding sites within the PSI core remain unclear. In this study, we determined the cryo-electron microscopy structure of a PSI supercomplex incorporating fucoxanthin chlorophyll a/c-binding proteins (FCPs), designated as PSI-FCPI, isolated from the diatom Thalassiosira pseudonana CCMP1335. Structural analysis of PSI-FCPI revealed five FCPI subunits associated with a PSI monomer; these subunits were identified as RedCAP, Lhcr3, Lhcq10, Lhcf10, and Lhcq8. Through structural and sequence analyses, we identified specific protein-protein interactions at the interfaces between FCPI and PSI subunits, as well as among FCPI subunits themselves. Comparative structural analyses of PSI-FCPI supercomplexes, combined with phylogenetic analysis of FCPs from T. pseudonana and the diatom Chaetoceros gracilis, underscore the evolutionary conservation of protein motifs crucial for the selective binding of individual FCPI subunits. These findings provide significant insights into the molecular mechanisms underlying the assembly and selective binding of FCPIs in diatoms.

Characterization of natural compounds derived from diatom C. gracilis as potential therapeutic agents: An in-silico networking and docking study

Marine diatom Chaetoceros gracilis have been known as the key player regulating the nutritional content of aquaculture species. Being able to synthesize an array of high value bioactive compounds like amino acids, lipids, terpenoids and polysaccharides, it also serves as potential therapeutic and nutraceutical agent. This in silico-based study elucidates the interactive association of different compounds, proteins and pathways of the diatom C. gracilis through an integrated network pharmacology and molecular docking approach. According to the Network analysis of the 41 compounds detected, saturated hydrocarbons, diterpenoids and phenolic compounds scored the highest degree (score > 140). These compounds were further coded for approximately 349 protein targets and almost 490 different pathways. HSP90AA1, STAT3, HIF1A, MTOR, ESR1, PIK3CA, MAPK1 and PTGS2 secured highest degree of protein-protein interaction according to STRING database. The gene enrichment analysis further revealed that these proteins were closely associated with metabolic pathways like Pathways in cancer, neuroactive ligand-receptor interaction, calcium and cAMP signaling pathway, PI3K-Akt signaling pathway, Alzheimer's disease and pathways of neurodegeneration which played an instrumental role in the metabolism of diseases and disorders like cancers of breast, prostrate, and liver, schizophrenia and other mental and hypertensive disorders. Furthermore, the molecular docking and toxicity assessment of a few novel compounds was done with mTOR and HSP90AA1 which revealed promising and stable interactions. Thus, this study provides the first in silico insight outlining the anti-cancerous and neuroprotective potential of novel bioactive compounds derived from marine diatom C.gracilis.

Investigating the role of allelochemicals in the interaction between Alexandrium monilatum and other phytoplankton species

Species of the dinoflagellate genus Alexandrium can release bioactive extracellular compounds with allelopathic effects (e.g., immobilization, inhibition of growth, photosynthesis or lysis) towards other phytoplanktonic organisms. In the lower Chesapeake Bay, Virginia, US, succession or co-occurrence of blooms of Akashiwo sanguinea, Margalefidinium polykrikoides and the goniodomin-producing A. monilatum tend to be common during summer months, however the allelopathic potential of A. monilatum, and how it may affect bloom dynamics, has not be studied. We used a rapid fluorescence-based bioassay as well as flow cytometry and an assessment of immobilization to determine the potential effects of A. monilatum culture supernatants on M. polykrikoides, A. sanguinea and the diatom Chaetoceros muelleri (included as a reference strain). In addition, we also investigated the effects of standards of known A. monilatum toxins goniodomin A (GDA) and GDA seco-acid (GDA-sa). Exposure of C. muelleri to culture supernatants from two different strains of A. monilatum resulted in an inhibition of the maximum quantum yield of the photosystem II (Fv/Fm) and cell lysis of the diatom, with strain-specific variation observed, highlighted by a 30-fold difference in the effective concentration resulting in 10 % inhibition (EC10) and 2-fold difference in the lethal concentration resulting in 50 % mortality (LC50) between the two A. monilatum strains tested. Exposure of M. polykrikoides to A. monilatum culture supernatants resulted in a decrease in motility (at ≥ 500 eq. cells mL-1) along with a decrease in Fv/Fm (at ≥ 1,500 cells mL-1) and altered cellular morphology (at ≥ 3,500 eq. cells mL-1). No effect was observed when A. sanguinea was exposed to A. monilatum culture supernatants (at the concentrations tested in these studies). When M. polykrikoides was exposed to the GDA standard, its Fv/Fm (at ≥ 1,951 nM) and motility (at ≥ 390 nM) decreased, and its morphology (at ≥ 975 nM) was modified. The study of supernatant time- and temperature-stability, and the absence of a relationship between observed effects and goniodomin concentrations suggested the presence of additional unknown allelochemicals distinct from goniodomins, as has been observed for other Alexandrium species. Immobilization of M. polykrikoides by A. monilatum culture supernatants and GDA standard in laboratory-based exposure experiments may indicate that A. monilatum has a competitive advantage when both species co-occur in the Chesapeake Bay and this warrants further testing.

Phylogenetic proximity drives temporal succession of marine giant viruses in a five-year metagenomic time-series.

Nucleocytoplasmic Large DNA Viruses (NCLDVs, also called giant viruses) are widespread in marine systems and infect a broad range of microbial eukaryotes (protists). Recent biogeographic work has provided global snapshots of NCLDV diversity and community composition across the world's oceans, yet little information exists about the guiding 'rules' underpinning their community dynamics over time. We leveraged a five-year monthly metagenomic time-series to quantify the community composition of NCLDVs off the coast of Southern California and characterize these populations' temporal dynamics. NCLDVs were dominated by Algavirales (Phycodnaviruses, 59%) and Imitervirales (Mimiviruses, 36%). We identified clusters of NCLDVs with distinct classes of seasonal and non-seasonal temporal dynamics. Overall, NCLDV population abundances were often highly dynamic with a strong seasonal signal. The Imitervirales group had highest relative abundance in the more oligotrophic late summer and fall, while Algavirales did so in winter. Generally, closely related strains had similar temporal dynamics, suggesting that evolutionary history is a key driver of the temporal niche of marine NCLDVs. However, a few closely-related strains had drastically different seasonal dynamics, suggesting that while phylogenetic proximity often indicates ecological similarity, occasionally phenology can shift rapidly, possibly due to host-switching. Finally, we identified distinct functional content and possible host interactions of two major NCLDV orders-including connections of Imitervirales with primary producers like the diatom Chaetoceros and widespread marine grazers like Paraphysomonas and Spirotrichea ciliates. Together, our results reveal key insights on season-specific effect of phylogenetically distinct giant virus communities on marine protist metabolism, biogeochemical fluxes and carbon cycling.

Diatom Chaetoceros Sp. as an Efficient Biological Antidote in Iron Toxicity: In‐Vitro and In‐Vivo Experiments

AbstractAll living organisms require mineral iron, but excess iron can lead to the production of free radicals and organ damage, such as liver damage in humans. This study investigated the diatom Chaetoceros sp. as an iron adsorbent in iron overload. First, the morphology and chemical composition of the diatom was characterized by spectroscopic and microscopic techniques. It was defined that diatoms have spherical particles with an average size of less than 2.0 μm. The affinity of diatoms for ionic Fe (II) uptake was evaluated. Fe (II) adsorption capacity was determined in vitro in two simulated intestinal and gastric aqueous media with pH values of 7.2 and 1.2. In both media, the diatom acted as a super‐adsorbent of Fe (II), while the highest adsorption occurred in a medium with a pH of 1.2. The correlation of the adsorption isotherm data was well studied with three well‐known equations, Langmuir, Fruindlich, and Redlich‐Peterson. The Langmuir model fitted the adsorption data best. The pseudo‐first‐order reaction model also provided a good fit for the adsorption kinetic data. In the in vivo study, the diatom was administered to iron‐overloaded rats. Biochemical parameters of organ damage and plasma Fe levels were determined at 2 h and 24 h intervals after diatom administration. The results show that diatoms can prevent acute iron poisoning by reducing plasma levels. Diatoms proved to be potent antidote agents in iron overdose conditions.

Environmental controls on the interannual variability in chlorophyll and phytoplankton community structure within the seasonal sub surface chlorophyll maximum in the western English channel

The subsurface chlorophyll maximum (SCM) is increasingly recognised as an important but understudied locus of primary production particularly in shelf seas. Here we report the results of a 4 year, repeat station, summer sampling programme (2013–2016) of a seasonally recurrent SCM in the Western English Channel. Interannual variability in phytoplankton community structure and chlorophyll distribution and intensity was strongly related to water column stability at the depth interval of the SCM and also to water temperature. The phytoplankton community was statistically distinct in each year. High stability, as evidenced by large Richardson numbers and a well-developed strong thermocline appeared to favour the growth of larger dinoflagellates (autotrophs or mixotrophs) and diatoms. Such conditions led to development of the most intense SCMs and these were sometimes dominated by a single or a few key species most prominently in 2015 with near monospecific concentrations of the dinoflagellate Tripos fusus with average peak SCM chlorophyll concentrations of 7.3 ± 4.4 μg l−1. By contrast, in years with low water column stability and intermittent turbulence at the thermocline (2014, 2016) there was greater chlorophyll dispersal and less intense SCM. In these low stability conditions, red fluorescent nano-phytoplankton, such as naked dinoflagellates, chlorophytes and prymnesiophytes, made a greater contribution to the community, possibly as a result of the advantages that motility and enhanced light utilisation efficiency confer within an SCM exposed to turbulence. It is also likely that turbulence disrupted the stability required by the larger dinoflagellates and diatoms. Several of the key SCM taxa were absent from surface waters including the dinoflagellates Tripos fusus, Tripos lineatus, and most of the Rhizosolenia/Proboscia diatoms, consistent with adaptations more suited to survival at depth in stratified waters. These traits include luxury nutrient uptake and storage and survival in low light (both groups) and mixotrophy (dinoflagellates). On the other hand, in 2013, diatoms including Pseudo-nitzschia spp. were abundant in both surface, SCM and bottom waters. The relatively cooler waters (11.6–12.1 °C on average in 2013 and 2016) were characterised by smaller diatoms (Chaetoceros spp. and Pseudo-nitzschia spp.) whereas the warmer waters (13.1 °C on average in 2014) contained larger diatoms (large Rhizosolenia spp., Lauderia annulata and Leptocylindrus danicus). There did not appear to be continuity of key species between years, other than for the dinoflagellate Tripos lineatus, which was significant in both 2013 and 2014 and present in 2015. In any given year, there was no correspondence between the key spring bloom phytoplankton species as monitored in the nearby Western Channel Observatory L4 station and the key SCM taxa.

Carry-Over Effects of Broodstock Conditioning on the Salinity Tolerance of Embryos of the New Zealand Geoduck (Panopea zelandica)

The New Zealand geoduck (Panopea zelandica) has seen considerable interest from the NZ aquaculture industry. A major bottleneck in culturing P. zelandica is early life stages mortality (e.g., embryo). Therefore, in this study, we investigated the embryonic performance and their transition to the first feeding larval stage (D-veliger) under different salinities (26, 30, 32, and 35 ppt) of four different offspring groups generated from broodstock being fed different ratios (25 : 75, 50 : 50, 60 : 40, and 75 : 25) of the haptophyte Tisochrysis lutea (formerly Isochrysis galbana) (ISO) and the diatom Chaetoceros muelleri (CM) during gametogenesis. Broodstock within all diet ratio treatments successfully conditioned, producing viable embryos. Average egg size ranged between 75 and 80 µm and was not affected by the diet ratios of the broodstock. Survival 48 hr postfertilization, D-veliger larvae yield, and incidence of abnormalities depended on both the embryo rearing salinity and broodstock feeding ratios. The combined salinity of 32−35 ppt and a feeding ratio of 50 : 50 and 60 : 40 (ISO:CM) had the highest survival of embryos (56.0%–77.5%), highest production of D-veliger larvae (>65%), and lowest incidence of abnormalities within D-Veliger (<47%). The size of the larvae decreased with decreasing salinities, with the largest found at 35 ppt (101.22 ± 0.49 µm in shell length). Embryos and larvae did not survive at salinity 26 ppt. These results suggest that diet during gametogenesis can play a role on the offspring ability to cope with environmental stressors at least during the critical first few days after fertilization. These findings provide important information on transgenerational effects due to broodstock diet, especially during the early life stages.

Taxonomic difference in marine bloom-forming phytoplanktonic species affects the dynamics of both bloom-responding prokaryotes and prokaryotic viruses.

The production of dissolved organic matter during phytoplankton blooms and consumption by heterotrophic prokaryotes promote marine carbon biogeochemical cycling. Although prokaryotic viruses presumably affect this process, their dynamics during blooms are not fully understood. Here, we investigated the effects of taxonomic difference in bloom-forming phytoplankton on prokaryotes and their viruses. We analyzed the dynamics of coastal prokaryotic communities and viruses under the addition of dissolved intracellular fractions from taxonomically distinct phytoplankton, the diatom Chaetoceros sp. (CIF) and the raphidophycean alga Heterosigma akashiwo (HIF), using microcosm experiments. Ribosomal RNA gene amplicon and viral metagenomic analyses revealed that particular prokaryotes and prokaryotic viruses specifically increased in either CIF or HIF, indicating that taxonomic difference in bloom-forming phytoplankton promotes distinct dynamics of not only the prokaryotic community but also prokaryotic viruses. Furthermore, combining our microcosm experiments with publicly available environmental data mining, we identified both known and novel possible host-virus pairs. In particular, the growth of prokaryotes associating with phytoplanktonic organic matter, such as Bacteroidetes (Polaribacter and NS9 marine group), Vibrio spp., and Rhodobacteriales (Nereida and Planktomarina), was accompanied by an increase in viruses predicted to infect Bacteroidetes, Vibrio, and Rhodobacteriales, respectively. Collectively, our findings suggest that changes in bloom-forming species can be followed by an increase in a specific group of prokaryotes and their viruses and that elucidating these tripartite relationships among specific phytoplankton, prokaryotes, and prokaryotic viruses improves our understanding of coastal biogeochemical cycling in blooms.IMPORTANCEThe primary production during marine phytoplankton bloom and the consumption of the produced organic matter by heterotrophic prokaryotes significantly contribute to coastal biogeochemical cycles. While the activities of those heterotrophic prokaryotes are presumably affected by viral infection, the dynamics of their viruses during blooms are not fully understood. In this study, we experimentally demonstrated that intracellular fractions of taxonomically distinct bloom-forming phytoplankton species, the diatom Chaetoceros sp. and the raphidophycean alga Heterosigma akashiwo, promoted the growth of taxonomically different prokaryotes and prokaryotic viruses. Based on their dynamics and predicted hosts of those viruses, we succeeded in detecting already-known and novel possible host-virus pairs associating with either phytoplankton species. Altogether, we propose that the succession of bloom-forming phytoplankton would change the composition of the abundant prokaryotes, resulting in an increase in their viruses. These changes in viral composition, depending on bloom-forming species, would alter the dynamics and metabolism of prokaryotes, affecting biogeochemical cycling in blooms.

Effects of benzophenone-3 and its metabolites on the marine diatom Chaetoceros neogracilis: Underlying mechanisms and environmental implications

The wide application of benzophenones (BPs), such as benzophenone-3 (BP3), as an ingredient in sunscreens, cosmetics, coatings, and plastics, has led to their global contamination in aquatic environments. Using the marine diatom Chaetoceros neogracilis as a model, this study assessed the toxic effects and mechanisms of BP3 and its two major metabolites (BP8 and BP1). The results showed that BP3 exhibited higher toxicity on C. neogracilis than BP8 and BP1, with their 72-h median effective concentrations being 0.4, 0.8 and 4 mg/L, respectively. Photosynthesis efficiencies were significantly reduced after exposure to environmentally relevant concentrations of the three benzophenones, while cell viability, membrane integrity, membrane potential, and metabolic activities could be further impaired at their higher concentrations. Comparative transcriptomic analysis, followed by gene ontology and KEGG pathway enrichment analyses unraveled that all the three tested benzophenones disrupted photosynthesis and nitrogen metabolism of the diatom through alteration of similar pathways. The toxic effect of BP3 was also attributable to its unique inhibitory effects on eukaryotic ribosome biosynthesis and DNA replication. Taken together, our findings underscore that benzophenones may pose a significant threat to photosynthesis, oxygen production, primary productivity, carbon fixation, and the nitrogen cycle of diatom in coastal waters worldwide.

Lipid-induced quenching of chlorophyll singlet excitation in lipid-nanodisc accommodated FCP complex from diatom Chaetoceros gracilis

Diatom is the most flourishing group of ocean photosynthetic organism, whose living success relies largely on the light-harvesting and photoprotection potency of its antenna complex, i.e. the fucoxanthin chlorophyll (Chl) a/c binding protein (FCP). With reference to the light-harvesting antennae of higher plants and green algae, FCP binds weakly coupled Chls, among which the intra-complex excitation energy transfer (EET) is more susceptive to the protein conformation and surrounding. Particularly, the fucoxanthin molecules bound in FCP are highly interactive with the thylakoid membrane, which may influence the intra-complex EET processes. To investigate the effect of lipid microenvironment on the conformation and the energetics of FCP, we reconstituted Chaetoceros gracilis FCP dimer into L-α-PC lipid nanodisc, and investigated the fluorescence dynamics among different pools of Chls using time-resolved fluorescence spectroscopy. The lipid-protein interactions lead to obvious conformational change of the blue-absorbing fucoxanthin molecule, and about 30 % decrease in Chl a-fluorescence quantum yield and 20 % shortening in fluorescence lifetime, which is ascribed to the quenching of major fluorescent component at 677 nm by non-radiative quencher.

Impact of polystyrene microplastics on the growth and photosynthetic efficiency of diatom Chaetoceros neogracile

The increasing prevalence of microplastic pollution in aquatic environments has raised concerns about its impact on marine life. Among the different types of microplastics, polystyrene microplastics (PSMPs) are one of the most commonly detected in aquatic systems. Chaetoceros neogracile (diatom) is an essential part of the marine food web and plays a critical role in nutrient cycling. This study aimed to monitor the ecotoxicological impact of PSMPs on diatoms and observe enzymatic interactions through molecular docking simulations. Results showed that diatom growth decreased with increasing concentrations and exposure time to PSMPs, and the lowest photosynthetic efficiency (Fv/Fm) value was observed after 72 and 96 h of exposure to 200 mg L−1 of PSMPs. High concentrations of PSMPs led to a decrease in chlorophyll a content (up to 64.4%) and protein content (up to 35.5%). Molecular docking simulations revealed potential interactions between PSMPs and the extrinsic protein in photosystem II protein of diatoms, suggesting a strong affinity between the two. These findings indicate a detrimental effect of PSMPs on the growth and photosynthetic efficiency of diatoms and highlight the need for further research on the impact of microplastics on marine microbial processes.

Response of varying combined nutrients on biomass and biochemical composition of marine diatoms Chaetoceros gracilis and Thalassiosira weissflogii

Marine diatoms have high adaptability and are known to accumulate lipids under nutrient stress conditions. The present study involves determining the effect of varying macro and micronutrients on growth kinetics and metabolite production of oleaginous marine diatoms, Thalassiosira weissflogii and Chaetoceros gracilis. The results highlighted that C. gracilis and T. weissflogii showed maximum biomass yield of 0.86 ± 0.06 g/L and 0.76 ± 0.01 g/L in the 2f and f supplemented medium respectively. A 2.5-fold increase in cellular lipid content was recorded in the 2f culture setup of both strains ranging from 20 % to 26.7 % (w/w). The study also reveals that high eutrophic nutrient media (f, 2f and 4f) triggered biomass productivity as well as total protein and carbohydrate content in both strains. Thus, providing a reproducible insight of trophic flexibility of diatoms, concomitant with the increment in multiple commercially valuable products.

A widespread picornavirus affects the hemocytes of the noble pen shell (Pinna nobilis), leading to its immunosuppression.

The widespread mass mortality of the noble pen shell (Pinna nobilis) has occurred in several Mediterranean countries in the past 7 years. Single-stranded RNA viruses affecting immune cells and leading to immune dysfunction have been widely reported in human and animal species. Here, we present data linking P. nobilis mass mortality events (MMEs) to hemocyte picornavirus (PV) infection. This study was performed on specimens from wild and captive populations. We sampled P. nobilis from two regions of Spain [Catalonia (24 animals) and Murcia (four animals)] and one region in Italy [Venice (6 animals)]. Each of them were analyzed using transmission electron microscopy (TEM) to describe the morphology and self-assembly of virions. Illumina sequencing coupled to qPCR was performed to describe the identified virus and part of its genome. In 100% of our samples, ultrastructure revealed the presence of a virus (20 nm diameter) capable of replicating within granulocytes and hyalinocytes, leading to the accumulation of complex vesicles of different dimensions within the cytoplasm. As the PV infection progressed, dead hemocytes, infectious exosomes, and budding of extracellular vesicles were visible, along with endocytic vesicles entering other cells. The THC (total hemocyte count) values observed in both captive (eight animals) (3.5 × 104-1.60 × 105 ml-1 cells) and wild animals (14 samples) (1.90-2.42 × 105 ml-1 cells) were lower than those reported before MMEs. Sequencing of P. nobilis (six animals) hemocyte cDNA libraries revealed the presence of two main sequences of Picornavirales, family Marnaviridae. The highest number of reads belonged to animals that exhibited active replication phases and abundant viral particles from transmission electron microscopy (TEM) observations. These sequences correspond to the genus Sogarnavirus-a picornavirus identified in the marine diatom Chaetoceros tenuissimus (named C. tenuissimus RNA virus type II). Real-time PCR performed on the two most abundant RNA viruses previously identified by in silico analysis revealed positive results only for sequences similar to the C. tenuissimus RNA virus. These results may not conclusively identify picornavirus in noble pen shell hemocytes; therefore, further study is required. Our findings suggest that picornavirus infection likely causes immunosuppression, making individuals prone to opportunistic infections, which is a potential cause for the MMEs observed in the Mediterranean.

Extraction of fucoxanthin, antioxidants and lipid from wet diatom Chaetoceros simplex var. calcitrans by liquefied dimethyl ether

The co-production of lipids and high value-added products from microalgae is a key milestone for practical, microalgae-derived food and biofuel production. However, the use of ethanol as a solvent for lipid extraction requires a drying pretreatment to avoid wastewater contamination and large energy consumption during solvent recovery. Previous studies on lipid production have reported liquefied dimethyl ether (DME) as an alternative solvent that can extract lipids from high water content microalgae with low energy consumption by eliminating the traditional drying step. In this study, liquefied DME is used as a solvent to extract fucoxanthin, antioxidants, and lipids from wet diatom Chaetoceros simplex var. calcitrans. DME extracted 9.2 mg/g-dry microalgae of fucoxanthin from wet sample; this is slightly less than the 11.9 mg/g-dry microalgae extracted from dry sample by ethanol. The total phenolic content and antioxidant capacity of the liquefied DME extracts were only slightly lower than those of the ethanol extract. Using DME, all water and 22.7 wt% of lipid, and 5.6 wt% of atty acid were extracted. Lipids extracted with liquefied DME have a higher C/N, an indicator of suitability for conversion to biofuel, than lipids obtained by ethanol extraction. The microalga contains high levels of unsaturated fatty acids. Liquefied DME extraction is sustainable method because liquefied DME can extract most of the lipids and functional components without drying the diatom. DME avoids risks associated with ethanol.

Analysis on Component of Cultured Diatoms and Their Application as Li‐Ion Battery Anodes

AbstractDiatom is a kind of unicellular organism, whose cell wall is composed of hydrated amorphous silica. Herein, we conducted content and component analysis for three typical genera of self‐cultured diatoms, and explored their fascinating properties to construct anodes of lithium ion batteries (LIBs). Three types of diatoms (Chaetoceros, Navicula, and Stephanodiscus) were extracted and purified for detailed characterization, which verified their main components (e. g., water, protein, carbohydrate, fat, frustule) and delicate hierarchical porous microstructures. Besides, a facile treatment was applied to prepare the diatom‐based anode composites for LIBs. A series of electrochemical tests were conducted to verify their excellent performance of high Initial Coulombic Efficiency(ICE), superior rate capacity and reusability. These fascinating properties could be ascribed to integration of the protoplasmic carbon and unique microstructure. This work offers a feasible strategy to construct renewable natural materials with remarkable anode performance for advanced LIBs.

RNA/DNA ratios as estimate of metabolic and functional traits in diatom species from the northwestern Adriatic Sea

Abstract Different phytoplankton biomass estimations can provide information about abundance variation, but they are not able to describe the metabolic activity of species or groups within assemblages. Conversely, molecular traits are key for the metabolic dynamics in pelagic ecosystems. To investigate if the RNA/DNA and taxon-specific 18S ribosomal RNA (rRNA)/ribosomal DNA (rDNA) ratios could be used to assess and be indicators of metabolic activity in marine phytoplankton species, two Adriatic diatom species, Chaetoceros socialis and Skeletonema marinoi, were studied. Significant correlations between abundance, chlorophyll a, carbon content and proteins were found in individual and co-cultured growth experiments (from rs = 0.570 to rs = 0.986, P < 0.001). The biomass trend followed a logistic curve without providing additional information regarding diatom metabolic activity. In both experiments, the RNA/DNA and taxon-specific 18S rRNA/rDNA ratios of C. socialis and S. marinoi showed maximum values at the beginning of the growth phase, i.e as 23.2 ± 1.5 and 15.3 ± 0.8, and 16.2 ± 1.6 and 30.1 ± 5.4 after 2 and 6 days, respectively, in individual cultures, with a subsequent significant decrease in these values for both species in individual and co-culture experiments. Our results showed that these molecular rRNA/rDNA ratios expressed an activation of metabolism before the abundance increases, even in the presence of interspecific interaction between C. socialis and S. marinoi.

Single cell dynamics and nitrogen transformations in the chain forming diatom Chaetoceros affinis

Colony formation in phytoplankton is often considered a disadvantage during nutrient limitation in aquatic systems. Using stable isotopic tracers combined with secondary ion mass spectrometry (SIMS), we unravel cell-specific activities of a chain-forming diatom and interactions with attached bacteria. The uptake of 13C-bicarbonate and15N-nitrate or 15N-ammonium was studied in Chaetoceros affinis during the stationary growth phase. Low cell-to-cell variance of 13C-bicarbonate and 15N-nitrate assimilation within diatom chains prevailed during the early stationary phase. Up to 5% of freshly assimilated 13C and 15N was detected in attached bacteria within 12 h and supported bacterial C- and N-growth rates up to 0.026 h−1. During the mid-stationary phase, diatom chain-length decreased and 13C and 15N-nitrate assimilation was significantly higher in solitary cells as compared to that in chain cells. During the late stationary phase, nitrate assimilation ceased and ammonium assimilation balanced C fixation. At this stage, we observed highly active cells neighboring inactive cells within the same chain. In N-limited regimes, bacterial remineralization of N and the short diffusion distance between neighbors in chains may support surviving cells. This combination of “microbial gardening” and nutrient transfer within diatom chains represents a strategy which challenges current paradigms of nutrient fluxes in plankton communities.

Phytoplankton community composition in relation to environmental variability in the Urdaibai estuary (SE Bay of Biscay): Microscopy and eDNA metabarcoding

Phytoplankton monitoring is essential for the global understanding of aquatic ecosystems. The present research studies the phytoplankton community of the Urdaibai estuary, combining microscopy and eDNA metabarcoding for the first time in the area. The main aims were to describe the phytoplankton community composition in relation to the environmental conditions of the estuary, and to compare the two methods used. Diatoms Minutocellus polymorphus and Chaetoceros tenuissimus dominated the outer estuary, being replaced by Teleaulax acuta (cryptophyte), Kryptoperidinium foliaceum (dinoflagellate) and Cyclotella spp. (diatom) towards the inner area. This change was mainly prompted by salinity and nutrients. Metabarcoding revealed the presence of 223 species that were not observed by microscopy in previous studies in the estuary. However, several characteristic species (e.g., K. foliaceum) were only detected with microscopy. Additionally, microscopy covered the limitations of eDNA metabarcoding concerning quantification. Thus, to give a full insight, a combination of techniques is recommended.