Photosynthesis In Diatoms Research Articles

Biomimetic low carbonization efficient solar-driven thermochemical energy storage reactor design inspired by the diatoms’ superior photosynthesis capacity

Photon is the energy source that drives solar thermochemistry. Photon-based radiative transfer in the reactor space is an essential mode of energy transfer. However, there often exists mismatch between the radiative and chemical fields in direct solar thermochemical processes, which can lead to ultra-high temperature gradients and high carbonization rates. While, the vicious cycle that exists between high temperature gradients and higher carbonization rates could severely limit the thermochemical efficiency. To improve the efficiency and reduce the temperature gradient and carbonization, inspired by the superior performance of diatom photosynthesis, a biomimetic radiation-regulated reactor is proposed. The paper establishes multi-field model of steam methane reforming, and analyzes the energy conversion processes at pore-scale. In numerical analyses, compared to the conventional reactor, the biomimetic reactor enhances the light forward scattering in fore-end and the backward scattering in rear-end, which increases the light absorption efficiency by 6.8% and reduces the temperature gradient by 41.3%. In experimental investigation, the methane conversion and the solar-fuel efficiency of the biomimetic reactor is 48.6% and 44.0%, which is increased by 11.5% and 10.7% respectively. It also demonstrates high efficiency and stability under long operating conditions. The biomimetic reactor provides a new strategy for industrial solar-driven methane conversion.

Soil remediation and nano-biosilica: a potential combination to improve the environmental quality of brackishwater aquaculture ponds affected by acid sulfate soils.

The successful management of ASS-affected brackishwater aquaculture ponds necessitates overcoming associated environmental limitations. This study investigated the potential application of nano-biosilica from rice husk ash (RHA) and soil remediation techniques to improve the environmental quality of ASS-affected brackishwater ponds. The study followed a completely randomized design (CRD) with four treatments and three replicates. The treatments comprised applying soil remediation, nano-biosilica fertilizer, and their combination. The study generally revealed that the combination of soil remediation technique and RHA-driven nano-biosilica improved the water quality of ASS-affected brackishwater ponds. Soil remediation improved water quality by reducing acidity levels. However, excessive lime application as an integral part of the remediation might release acidity and toxic metals into water, potentially increasing calcium-phosphorus fixation. Despite liming potential negative consequences, if mixed with nano-biosilica could increase diatom-phytoplankton growth by reducing dissolved Al and Fe levels while boosting P and Si availability. Liming could also help boost diatom photosynthesis and inhibit unwanted algae blooms by decreasing water turbidity and increasing sunlight penetration. This study emphasized that the effectiveness of nano-biosilica in promoting diatom growth depends on appropriate nitrogen (N) and phosphorus (P) concentrations and ratios, which should not be a limiting factor. However, the required N/P concentration and ratio are only met if the remediation method is effectively implemented. The combination of nano-biosilica and soil remediation treatment maintained SiO2 concentrations above the average natural seawater concentration; however, availability may be limited due to complexes containing Ca, Al, Mg, and Fe. Regularly applying cost-effective nano-biosilica fertilizer in combination with N and P fertilizers is recommended to enhance water remediation efficiency by boosting Si availability and decreasing the toxicity of dissolved toxic metal ions.

Meta-analysis reveals responses of coccolithophores and diatoms to warming

A meta-analysis was conducted to explore the effects of warming on the physiological processes of coccolithophores and diatoms by synthesizing a large number of published literatures. A total of 154 studies consisting 301 experiments were synthesized in this study. Under a projected temperature increase of 3–5 °C by IPCC AR6 at the end of this century, our results suggest that the growth and photosynthetic rate of coccolithophores were significantly enhanced by the rising temperature, while the calcification of coccolithophores was only slightly promoted. Warming also had significantly positive effects on the growth but not photosynthesis of diatoms. In comparison, the effect size of warming on the growth rate of coccolithophores was larger than that of diatoms. However, there was no significant effect of warming on either the ratio of particulate inorganic carbon to particulate organic carbon (PIC:POC) of coccolithophores or the ratio of biogenic silica to carbon (BSi:C) of diatoms. Furthermore, the results reveal latitudinal and size-specific patterns of the effect sizes of warming. For diatoms, the effects of warming on growth were more prominent in high latitudes, specifically for the Southern Hemisphere species. In addition, the effect size of warming on the small-sized diatoms was larger than that of the large-sized diatoms. For coccolithophores, the growth of the Southern Hemisphere temperate strains was significantly promoted by warming. Overall, the results based on the meta-analysis indicate that the projected warming of the end of this century will be more favor to the growth of coccolithophores than that of diatoms, thus potentially affect the competitive advantages of coccolithophores over diatoms; while the mid-to high latitude species/strains of both coccolithophores and diatoms will benefit more than their counterparts in the lower latitudes. Therefore, this study offers novel insights into predicting both the inter- and intra-group competitive advantages of diatoms and coccolithophores under the future warming climate change scenario.

Warming modulates the photosynthetic performance of Thalassiosira pseudonana in response to UV radiation.

Diatoms form a major component of phytoplankton. These eukaryotic organisms are responsible for approximately 40% of primary productivity in the oceans and contribute significantly to the food web. Here, the influences of ultraviolet radiation (UVR) and ocean warming on diatom photosynthesis were investigated in Thalassiosira pseudonana. The organism was grown at two temperatures, namely, 18°C, the present surface water temperature in summer, and 24°C, an estimate of surface temperature in the year 2,100, under conditions of high photosynthetically active radiation (P, 400-700 nm) alone or in combination with UVR (P + UVR, 295-700 nm). It was found that the maximum photochemical yield of PSII (Fv/Fm) in T. pseudonana was significantly decreased by the radiation exposure with UVR at low temperature, while the rise of temperature alleviated the inhibition induced by UVR. The analysis of PSII subunits turnover showed that high temperature alone or worked synergistically with UVR provoking fast removal of PsbA protein (KPsbA), and also could maintain high PsbD pool in T. pseudonana cells. With the facilitation of PSII repair process, less non-photochemical quenching (NPQ) occurred at high temperature when cells were exposed to P or P + UVR. In addition, irrespective of radiation treatments, high temperature stimulated the induction of SOD activity, which partly contributed to the higher PSII repair rate constant (Krec) as compared to KPsbA. Our findings suggest that the rise in temperature could benefit the photosynthetic performance of T. pseudonana via modulation of its PSII repair cycle and protective capacity, affecting its abundance in phytoplankton in the future warming ocean.

Pyrenoid-core CO2-evolving machinery is essential for diatom photosynthesis in elevated CO2.

Marine diatoms are responsible for up to 20% of the annual global primary production by performing photosynthesis in seawater where CO2 availability is limited while HCO3- is abundant. Our previous studies have demonstrated that solute carrier 4 proteins at the plasma membrane of the diatom Phaeodactylum tricornutum facilitate the use of the abundant seawater HCO3-. There has been an unconcluded debate as to whether such HCO3- use capacity may itself supply enough dissolved inorganic carbon (DIC) to saturate the enzyme Rubisco. Here, we show that the θ-type carbonic anhydrase, Ptθ-CA1, a luminal factor of the pyrenoid-penetrating thylakoid membranes, plays an essential role in saturating photosynthesis of P. tricornutum. We isolated and analyzed genome-edited mutants of P. tricornutum defective in Ptθ-CA1. The mutants showed impaired growth in seawater aerated with a broad range of CO2 levels, from atmospheric to 1%. Independently of growth CO2 conditions, the photosynthetic affinity measured as K0.5 for DIC in mutants reached around 2 mm, which is about 10 times higher than K0.5[DIC] of high-CO2-grown wild-type cells that have repressed CO2-concentrating mechanism levels. The results clearly indicate that diatom photosynthesis is not saturated with either seawater-level DIC or even under a highly elevated CO2 environment unless the CO2-evolving machinery is at the core of the pyrenoid.

Pre-purification of diatom pigment protein complexes provides insight into the heterogeneity of FCP complexes

BackgroundAlthough our knowledge about diatom photosynthesis has made huge progress over the last years, many aspects about their photosynthetic apparatus are still enigmatic. According to published data, the spatial organization as well as the biochemical composition of diatom thylakoid membranes is significantly different from that of higher plants.ResultsIn this study the pigment protein complexes of the diatom Thalassiosira pseudonana were isolated by anion exchange chromatography. A step gradient was used for the elution process, yielding five well-separated pigment protein fractions which were characterized in detail. The isolation of photosystem (PS) core complex fractions, which contained fucoxanthin chlorophyll proteins (FCPs), enabled the differentiation between different FCP complexes: FCP complexes which were more closely associated with the PSI and PSII core complexes and FCP complexes which built-up the peripheral antenna. Analysis by mass spectrometry showed that the FCP complexes associated with the PSI and PSII core complexes contained various Lhcf proteins, including Lhcf1, Lhcf2, Lhcf4, Lhcf5, Lhcf6, Lhcf8 and Lhcf9 proteins, while the peripheral FCP complexes were exclusively composed of Lhcf8 and Lhcf9. Lhcr proteins, namely Lhcr1, Lhcr3 and Lhcr14, were identified in fractions containing subunits of the PSI core complex. Lhcx1, Lhcx2 and Lhcx5 proteins co-eluted with PSII protein subunits. The first fraction contained an additional Lhcx protein, Lhcx6_1, and was furthermore characterized by high concentrations of photoprotective xanthophyll cycle pigments.ConclusionThe results of the present study corroborate existing data, like the observation of a PSI-specific antenna complex in diatoms composed of Lhcr proteins. They complement other data, like e.g. on the protein composition of the 21 kDa FCP band or the Lhcf composition of FCPa and FCPb complexes. They also provide interesting new information, like the presence of the enzyme diadinoxanthin de-epoxidase in the Lhcx-containing PSII fraction, which might be relevant for the process of non-photochemical quenching. Finally, the high negative charge of the main FCP fraction may play a role in the organization and structure of the native diatom thylakoid membrane. Thus, the results present an important contribution to our understanding of the complex nature of the diatom antenna system.

Structure‐based optics of centric diatom frustules: modulation of the in vivo light field for efficient diatom photosynthesis

The optical properties of diatom silicate frustules inspire photonics and nanotechnology research. Whether light interaction with the nano-structure of the frustule also affects diatom photosynthesis has remained unclear due to lack of information on frustule optical properties under more natural conditions. Here we demonstrate that the optical properties of the frustule valves in water affect light harvesting and photosynthesis in live cells of centric diatoms (Coscinodiscus granii). Microscale cellular mapping of photosynthesis around localized spot illumination demonstrated optical coupling of chloroplasts to the valve wall. Photonic structures of the three-layered C.granii valve facilitated light redistribution and efficient photosynthesis in cell regions distant from the directly illuminated area. The different porous structure of the two sides of the valve exhibited photon trapping and forward scattering of blue light enhancing photosynthetic active radiation inside the cell. Photonic structures of diatom frustules thus alter the cellular light field with implications on diatom photobiology.

Isolation of Plastid Fractions from the Diatoms Thalassiosira pseudonana and Phaeodactylum tricornutum.

The so-called "complex" plastids from diatoms possessing four envelope membranes are a typical feature of algae that arose from secondary endosymbiosis. Studying isolated plastids from these algae may allow answering a number of fundamental questions regarding diatom photosynthesis and plastid functionality. Due to their complex architecture and their integration into the cellularendoplasmic reticulum (ER) system, their isolation though is still challenging. In this work, we report a reliable isolation technique that is applicable for the two model diatoms Thalassiosira pseudonana and Phaeodactylum tricornutum. The resulting plastid-enriched fractions are of homogenous quality, almost free from cellular contaminants, and feature structurally intact thylakoids that are capable to perform oxygenic photosynthesis, though in most cases they seem to lack most of the stromal components as well as plastid envelopes.

Heat wave impacts on the model diatom Phaeodactylum tricornutum: Searching for photochemical and fatty acid biomarkers of thermal stress

Global warming is increasing the frequency and intensity of extreme thermal events, with inevitable consequences for marine ecosystems and organisms. Phytoplankton is at the base of marine food webs and diatoms are major contributors to global primary production. Therefore, environmental changes, such as heat, influencing growth, physiology and biochemical composition of diatoms, impact other organisms at higher trophic levels. The model diatom Phaeodactylum tricornutum, particularly rich in the long chain omega-3 eicosapentaenoic acid (EPA), and able to accumulate substantial amounts of storage lipids, has recently been the object of numerous works, regarding fundamental aspects of lipid metabolism and exploring its biotechnological potential for biodiesel and aquaculture purposes. The aim of this study was to use P. tricornutum, growing under controlled conditions, to examine the effects of a heat wave, in order to identify heat stress biomarkers. The photosynthetic and respiratory metabolism was investigated by Chlorophyll a fluorescence and by O2 evolution and discussed in connection with changes observed in the composition of photosynthetic pigments and fatty acids. Phaeodactylum tricornutum cells exposed to 26°C displayed lower photosynthetic O2 production, but similar respiratory rate, comparing to cells at control temperature (18°C), which is likely related to the biomass decrease observed under heat stress. Heat wave exposed cells also showed a less efficient PSII, higher energy dissipation and higher chlorophyll a and fucoxanthin concentrations, suggesting a heat-induced amplification of the light energy absorption capacity. Heat wave exposed cells showed lower relative EPA contents and double bond indexes, whereas the parameter inversely related to nutritional value, omega 6/omega 3 ratio, increased. Moreover, the analysis of the fatty acid profiles also suggested that heat exposure negatively impacted thylakoid lipids, in agreement with the decrease observed in photosynthesis. Results obtained highlight the negative impact of heat waves on diatom photosynthesis and nutritional value, as well as on their capacity to oxygenate ocean water. Furthermore, physiological parameters as well as fatty acids and photosynthetic pigments signatures, were identified, that could represent expedite biomarkers of thermal stress in future studies.

Plastid thylakoid architecture optimizes photosynthesis in diatoms

Photosynthesis is a unique process that allows independent colonization of the land by plants and of the oceans by phytoplankton. Although the photosynthesis process is well understood in plants, we are still unlocking the mechanisms evolved by phytoplankton to achieve extremely efficient photosynthesis. Here, we combine biochemical, structural and in vivo physiological studies to unravel the structure of the plastid in diatoms, prominent marine eukaryotes. Biochemical and immunolocalization analyses reveal segregation of photosynthetic complexes in the loosely stacked thylakoid membranes typical of diatoms. Separation of photosystems within subdomains minimizes their physical contacts, as required for improved light utilization. Chloroplast 3D reconstruction and in vivo spectroscopy show that these subdomains are interconnected, ensuring fast equilibration of electron carriers for efficient optimum photosynthesis. Thus, diatoms and plants have converged towards a similar functional distribution of the photosystems although via different thylakoid architectures, which likely evolved independently in the land and the ocean.

Relationship between isoprene emission and photosynthesis in diatoms, and its implications for global marine isoprene estimates

Global consensus estimates of marine isoprene emission (~1TgCyr−1) is significantly smaller than terrestrial isoprene emission (~500TgCyr−1), and the reasons are unclear. With the premise that isoprene emission is metabolically linked to photosynthesis in phytoplankton as in plants, we measured isoprene emission and photosynthesis to changing light levels in high-density cultures of two diatom species, Phaeodactylum tricornutum and Chaetoceros calcitrans. Isoprene emission increased and did not saturate with increasing light levels in C. calcitrans under laboratory conditions, whereas isoprene emission of P. tricornutum decreased at high-light levels with an associated increase in non-photochemical quenching. When tested for CO2 response, emission from P. tricornutum increased under low CO2 (similar to higher plants) but did not cease in absence of dissolved CO2, plausibly due to CO2 concentrating mechanisms. Isoprene emission under full-sun light in outdoor cultures of C. calcitrans (500±200fmolμgChl−1h−1) was significantly greater than maximum emission in laboratory cultures (100±30fmolμgChl−1h−1). We show that photosynthetic capacity of diatoms can be equal to or greater than that of higher plants. However, the carbon cost of isoprene emission in diatoms (≤0.0005% of photosynthesis) is significantly smaller than that in plants (0.9%). Based on these findings, we calculate that isoprene emission from diatoms alone can contribute ~4.8TgCyr−1 to the atmosphere, which is much greater than current modelled projections for annual isoprene emission from the entire marine ecosystem.

Size scaling of extracellular carbonic anhydrase activity in centric marine diatoms.

Many microalgae have a surface-associated extracellular carbonic anhydrase (eCA) that converts HCO3 (-) to CO2 for uptake and subsequent photosynthetic fixation. We investigated eCA activity and assessed its importance for photosynthetic CO2 supply in six centric diatom species spanning nearly the full range of cell sizes for centric diatoms (equivalent spherical radius 3-67 μm). Since larger cells are more susceptible to diffusion limitation, we hypothesized that eCA activity would increase with cell size as would its importance for CO2 supply. eCA activity did increase with cell size, increasing with cell radius by a size-scaling exponent of 2.6 ± 0.3. The rapid increase in eCA activity with cell radius keeps the absolute CO2 concentration difference between bulk seawater and the cell surface very low (<~0.2 μM) allowing high rates of CO2 uptake even for large diatoms. Although inhibiting eCA did reduce photosynthesis in the diatoms, there was no overall relationship between the extent of inhibition of photosynthesis and cell size. The only indication that eCA may be more important for larger diatoms was that photosynthesis in the smallest diatoms (<4 μm radius) was only affected by eCA inhibition when CO2 concentrations were very low, while photosynthesis in some larger diatoms was affected even at typical seawater CO2 concentrations. eCA is ubiquitous in centric marine diatoms, in contrast to other taxa where its presence is irregularly distributed among different species, and plays an important role in supplying CO2 for photosynthesis across the size spectrum.

Integrated metagenomic and metaproteomic analyses of marine biofilm communities

Metagenomic and metaproteomic analyses were utilized to determine the composition and function of complex air–water interface biofilms sampled from the hulls of two US Navy destroyers. Prokaryotic community analyses using PhyloChip-based 16S rDNA profiling revealed two significantly different and taxonomically rich biofilm communities (6,942 taxa) in which the majority of unique taxa were ascribed to members of the Gammaproteobacteria, Alphaproteobacteria and Clostridia. Although metagenomic sequencing indicated that both biofilms were dominated by prokaryotic sequence reads (> 91%) with the majority of the bacterial reads belonging to the Alphaproteobacteria, the Ship-1 metagenome harbored greater organismal and functional diversity and was comparatively enriched for sequences from Cyanobacteria, Bacteroidetes and macroscopic eukaryotes, whereas the Ship-2 metagenome was enriched for sequences from Proteobacteria and microscopic photosynthetic eukaryotes. Qualitative liquid chromatography-tandem mass spectrometry metaproteome analyses identified 678 unique proteins, revealed little overlap in species and protein composition between the ships and contrasted with the metagenomic data in that ~80% of classified and annotated proteins were of eukaryotic origin and dominated by members of the Bacillariophyta, Cnidaria, Chordata and Arthropoda (data deposited to the ProteomeXchange, identifier PXD000961). Within the shared metaproteome, quantitative 18O and iTRAQ analyses demonstrated a significantly greater abundance of structural proteins from macroscopic eukaryotes on Ship-1 and diatom photosynthesis proteins on Ship-2. Photosynthetic pigment composition and elemental analyses confirmed that both biofilms were dominated by phototrophic processes. These data begin to provide a better understanding of the complex organismal and biomolecular composition of marine biofilms while highlighting caveats in the interpretation of stand-alone environmental ‘-omics’ datasets.

Silencing of the Violaxanthin De-Epoxidase Gene in the Diatom Phaeodactylum tricornutum Reduces Diatoxanthin Synthesis and Non-Photochemical Quenching

Diatoms are a major group of primary producers ubiquitous in all aquatic ecosystems. To protect themselves from photooxidative damage in a fluctuating light climate potentially punctuated with regular excess light exposures, diatoms have developed several photoprotective mechanisms. The xanthophyll cycle (XC) dependent non-photochemical chlorophyll fluorescence quenching (NPQ) is one of the most important photoprotective processes that rapidly regulate photosynthesis in diatoms. NPQ depends on the conversion of diadinoxanthin (DD) into diatoxanthin (DT) by the violaxanthin de-epoxidase (VDE), also called DD de-epoxidase (DDE). To study the role of DDE in controlling NPQ, we generated transformants of P. tricornutum in which the gene (Vde/Dde) encoding for DDE was silenced. RNA interference was induced by genetic transformation of the cells with plasmids containing either short (198 bp) or long (523 bp) antisense (AS) fragments or, alternatively, with a plasmid mediating the expression of a self-complementary hairpin-like construct (inverted repeat, IR). The silencing approaches generated diatom transformants with a phenotype clearly distinguishable from wildtype (WT) cells, i.e. a lower degree as well as slower kinetics of both DD de-epoxidation and NPQ induction. Real-time PCR based quantification of Dde transcripts revealed differences in transcript levels between AS transformants and WT cells but also between AS and IR transformants, suggesting the possible presence of two different gene silencing mediating mechanisms. This was confirmed by the differential effect of the light intensity on the respective silencing efficiency of both types of transformants. The characterization of the transformants strengthened some of the specific features of the XC and NPQ and confirmed the most recent mechanistic model of the DT/NPQ relationship in diatoms.

FIRST INDUCED PLASTID GENOME MUTATIONS IN AN ALGA WITH SECONDARY PLASTIDS: psbA MUTATIONS IN THE DIATOM PHAEODACTYLUM TRICORNUTUM (BACILLARIOPHYCEAE) REVEAL CONSEQUENCES ON THE REGULATION OF PHOTOSYNTHESIS(1).

Diatoms play a crucial role in the biochemistry and ecology of most aquatic ecosystems, especially because of their high photosynthetic productivity. They often have to cope with a fluctuating light climate and a punctuated exposure to excess light, which can be harmful for photosynthesis. To gain insight into the regulation of photosynthesis in diatoms, we generated and studied mutants of the diatom Phaeodactylum tricornutum Bohlin carrying functionally altered versions of the plastidic psbA gene encoding the D1 protein of the PSII reaction center (PSII RC). All analyzed mutants feature an amino acid substitution in the vicinity of the QB -binding pocket of D1. We characterized the photosynthetic capacity of the mutants in comparison to wildtype cells, focusing on the way they regulate their photochemistry as a function of light intensity. The results show that the mutations resulted in constitutive changes of PSII electron transport rates. The extent of the impairment varies between mutants depending on the proximity of the mutation to the QB -binding pocket and/or to the nonheme iron within the PSII RC. The effects of the mutations described here for P.tricornutum are similar to effects in cyanobacteria and green microalgae, emphasizing the conservation of the D1 protein structure among photosynthetic organisms of different evolutionary origins.

Nearshore dynamics of nutrients and chlorophyll during Mediterranean-type flash-floods

A year-long study in the Bay of Banyuls-sur-Mer (France) assessed the inputs from the local intermittent Baillaury River and the stimulation of nearshore phytoplankton blooms. During flash-floods, dissolved inorganic nitro- gen, phosphate and dissolved organic carbon concentrations in the river were neither correlated to the river discharge nor to the season. Silicate was correlated to the river discharge. The particulate organic matter load was diluted in a mineral matrix (3-4%) but had a high nutritional quality at the beginning of the flash-flood. The offshore response to the single major flow event (October 2005) was monitored daily during two weeks at 350 m (8 m water depth) and 1.4 km from the river mouth (long-term monitoring station, 27 m water depth). The flash-flood signal was partly hidden at the shallowest site by swell resuspension of bottom sediments. At the deepest station, three phases were identified: (1) at the beginning of flow, river dissolved inputs dilute conservatively leading to increased dissolved inorganic nitrogen and silicate concentrations and decreased seawater salinity, (2) during the main turbid pulse, phosphate is released and (3) after the water column cleared, diatom photosynthesis occurred at 3 m below the water surface, leading seven days after the flow peak discharge to a high of 2 µ gL −1 of chlorophyll a, which vanished three days later. The nutrients and salinity recovered their pre-flow values at that time. This dynamics of nutrients and chlorophyll during a flash-flood event is consistent with long-term monitoring data.

Processes Causing the Temporal Changes in Si/N Ratios of Nutrient Consumptions and Export Flux during the Spring Diatom Bloom

Two processes are generally explained as causes of temporal changes in the stoichiometric silicon/nitrogen (Si/N) ratios of sinking particles and of nutrient consumption in the surface water during the spring diatom bloom: (1) physiological changes of diatom under the stress of photosynthesis of diatom and (2) differences of regeneration between silicon and nitrogen. We investigated which process plays an important role in these changes using a one-dimensional ecosystem model that explicitly represents diatom and the other non-silicious phytoplankton. The model was applied to station A7 (41°30′ N, 145°30′ E) in the western North Pacific, where diatom regularly blooms in spring. Model simulations show that the Si/N ratios of the flux exported by the sinking particles at 100 m depth and of nutrient consumptions in the upper 100 m surface water have their maxima at the end of the spring diatom bloom, the values and timings of which are significantly different from each other. Analyses of the model results show that the differences of regeneration between silicon and nitrogen mainly cause the temporal changes of the Si/N ratios. On the other hand, the physiological changes of diatoms under stress can hardly cause these temporal changes, because the effect of the change in the diatom's uptake ratio of silicon to nitrogen is cancelled by that in its sinking rate.

One Dimensional Ecosystem Model Simulation of the Effects of Vertical Dilution by the Winter Mixing on the Spring Diatom Bloom

A one-dimensional ecosystem model has been used to investigate the processes relevant to the spring diatom bloom which play important roles in the biogeochemical cycle in the western subarctic Pacific. The model represents the plankton dynamics and the nutrient cycles in the spring diatom bloom; its results show the importance of dilution by deep mixing in winter. It is supposed that the vertically integrated biomass of phytoplankton decreases in the winter due to the decrease of photosynthesis, because the deep mixing transports phytoplankton to a layer with a low light level. However, the observed integrated diatom biomass increases as the mixed layer deepens. This is because the decrease of concentration due to dilution by mixing causes the diatom grazed pressure to be less significant than diatom photosynthesis. In other words, the effect of dilution on the grazed rate is more significant than the effect on the photosynthesis rate because the grazed rate depends on the concentrations of both diatom and grazer, whereas the photosynthesis rate depends only diatom concentration. The average specific diatom grazed rate, defined as grazed rate divided by diatom biomass, decreases by 35% associated with the deepening, while the average specific photosynthesis rate of diatom decreases by 11%. As a result, the average specific net diatom growth rate during the deep mixing is about 70% of its maximum during the spring diatom bloom. The deep mixing significantly affects the amplitude of the spring diatom bloom not only by the supply of nutrients but also by the dilution which drastically decreases the grazed pressure.

Modeling Size-dependent Photosynthesis: Light Absorption and the Allometric Rule

Microalgal photosynthesis can be predicted using empirical allometric or mechanistic bio-optic models. These two descriptions are usually considered independently. We compare the size scaling of photosynthesis predicted by these two models. Size scaling exponents for phytoplankton often deviate from the allometric 3/4 rule. This may be because the allometric model does not account for the size dependence of light absorption and its effect on the size scaling of photosynthesis. In contrast to the allometric model and experimental data, the bio-optic model predicts photosynthesis should be independent of cell size when intracellular pigment concentrations are low or inversely related to cell diameter. A composite of the allometric and bio-optic models is described and compared to laboratory data of light-limited nutrient-saturated diatom photosynthesis. The allo-bio-optic model provides a mechanistic explanation for the anomalous size scaling found in laboratory and field studies of microalgal photosynthesis and growth.

Oxygenation of intertidal estuarine sediments by benthic microalgal photosynthesis

A mathematical model was used to define the relative importance of microalgal photosynthesis and physical processes in the formation and maintenance of the oxygenated zone on the surface of intertidal estuarine sediments. Manometric measurements of sediment uptake and release showed that gross oxygen production usually exceeded aerobic community respiration. Polarometric microprobes measured vertical oxygen distributions in the sediment. Surface levels of oxygen ranged from 200% saturation in summer to 70% in winter. Profiles and flux measurements allowed calculation of sediment diffusion coefficients. Empirical evaluation of the terms of the model showed that epipelic diatom photosynthesis as a source of oxygen at low tide may exceed atmospheric diffusion by an order of magnitude. On a diurnal and seasonal basis, however, the diatoms may be less important to the oxygenation process than the physical forces of the tide.