ABSTRACT Soil compaction is prevalent in forest ecosystems, it alters the physical structure of the soil and impedes tree growth. Although ameliorants are known to enhance soil properties and positively influence tree growth, studies remain limited on the effects of potential factors on root development in compacted soils after amelioration. This study aimed to examine the effects of the physical ameliorant treatments BIOC (compaction + biochar) and ORGF (compaction + organic fertilizer) on the soil properties, growth, and root development of Prunus yedoensis and Ginkgo biloba seedlings in compacted soils. We found that ameliorant treatments improved physicochemical soil conditions, such as bulk density, porosity, permeability, pH, total carbon, and total nitrogen, which in turn influence seedling growth. Specifically, in P. yedoensis, the relative growth rate of height was significantly higher in BIOC (46.19 ± 3.47%) compared to the control (29.58 ± 3.22%). The ameliorants did not significantly affect root morphological traits; however, we found that the total fine root length was positively correlated with shoot biomass in G. biloba (R = 0.97), but not in P. yedoensis. Root length tended to increase in BIOC, with measurements of 288.12 ± 68.97 m for P. yedoensis and 65.96 ± 25.08 m for G. biloba, while the mean fine root diameter tended to decrease in ORGF (1.25 ± 0.04 mm) and BIOC (1.37 ± 0.08 mm) for G. biloba. We conclude that biochar and organic fertilizer positively affect both soil properties and plant growth, highlighting that enhanced root development through ameliorants can improve plant growth in compacted soil.