Diagnostic Morphological Characters Research Articles

Aegokeras gazipashensis (Apiaceae), a new species from South Anatolia, Turkey

A new species, Aegokeras gazipashensis (Apiaceae), is described from South Anatolia, Turkey. It grows in mountain steppe formation of the Taurus Mountains in the district of Gazipaşa (Antalya province). The taxonomic affinities of the new species were determined by analyzing morphological data and a molecular phylogenetic study of nrITS. Aegokeras gazipashensis is morphologically similar to A. caespitosa but it differs mainly with growing habitat, non-caespitose habit, remains of old leaf bases, morphology of roots, leaves, and leaflets, presence of petiole, and stylopodium rim features. The anatomical structure of the fruit is given. The diagnostic morphological characters of A. gazipashensis are discussed. In addition, the geographical distribution of the new species and the morphologically related A. caespitosa species is mapped. In this study, an identification key with a description of the new species is provided along with statements about the habitat, ecology, phenology, and conservation status of the new species.

Revision of the Subgenus Ochthomantis Frogs from Madagascar (Amphibia: Mantellidae) with the Description of Four Species and Resurrection of Mantidactylus catalai and M. poissoni.

The subgenus Ochthomantis is an obligate forest and stream-dwelling group of mantellid frogs, endemic to Madagascar, with six species currently recognized. However, this group suffers from ongoing taxonomic confusion due to low numbers of examined specimens, and failure to consider morphological variation from development and sexual dimorphism. Here, we examined the morphology of 637 sexed adult specimens collected by us in the field and from other museum collections. We also sequenced a DNA fragment of the 16S mtDNA gene for each lineage to determine congruence between morphological and molecular data sets and to help delimit species. Our results demonstrate that the subgenus Ochthomantis includes eleven valid species: five already recognized, M. catalai and M. poissoni that we resurrect from synonymy, and four new species which we describe for the first time here. In some analyses, Mantidactylus majori groups with other Mantidactylus subgenera, so we do not consider it a member of the subgenus Ochthomantis in this study. All species have restricted distributions and elevational ranges in the humid forests of Madagascar. This study demonstrates the utility of assessing cryptic species using both diagnostic morphological characters and molecular data. The discovery of this new cryptic biodiversity, and the taxonomic revision herein, will likely require conservation activities for those species with the most restricted distributions.

Atlantic Oceanic Squids in the "Grey Speciation Zone".

Cryptic species complexes represent an important challenge for the adequate characterization of Earth's biodiversity. Oceanic organisms tend to have greater unrecognized cryptic biodiversity since the marine realm was often considered to lack hard barriers to genetic exchange. Here, we tested the effect of several Atlantic and Mediterranean oceanic barriers on 16 morphospecies of oceanic squids of the orders Oegopsida and Bathyteuthida using three mitochondrial and one nuclear molecular marker and five species delimitation methods. Number of species recognized within each morphospecies differed among different markers and analyses, but we found strong evidence of cryptic biodiversity in at least four of the studied species (Chtenopteryx sicula, Chtenopteryx canariensis, Ancistrocheirus lesueurii, and Galiteuthis armata). There were highly geographically structured units within Helicocranchia navossae that could either represent recently diverged species or population structure. Although the species studied here can be considered relatively passive with respect to oceanic currents, cryptic speciation patterns showed few signs of being related to oceanic currents. We hypothesize that the bathymetry of the egg masses and duration of the paralarval stage might influence the geographic distribution of oceanic squids. Because the results of different markers and different species delimitation methods are inconsistent and because molecular data encompassing broad geographic sampling areas for oceanic squids are scarce and finding morphological diagnostic characters for early life stages is difficult, it is challenging to assess the species boundaries for many of these species. Thus, we consider many to be in the "grey speciation zone." As many oceanic squids have cosmopolitan distributions, new studies combining genomic and morphological information from specimens collected worldwide are needed to correctly assess the actual oceanic squid biodiversity.

Neglected no longer: Phylogenomic resolution of higher-level relationships in Solifugae

Advanced sequencing technologies have expedited resolution of higher-level arthropod relationships. Yet, dark branches persist, principally among groups occurring in cryptic habitats. Among chelicerates, Solifugae ("camel spiders") is the last order lacking a higher-level phylogeny and have thus been historically characterized as "neglected [arachnid] cousins". Though renowned for aggression, remarkable running speed, and xeric adaptation, inferring solifuge relationships has been hindered by inaccessibility of diagnostic morphological characters, whereas molecular investigations have been limited to one of 12 recognized families. Our phylogenomic dataset via capture of ultraconserved elements sampling all extant families recovered a well-resolved phylogeny, with two distinct groups of New World taxa nested within a broader Paleotropical radiation. Divergence times using fossil calibrations inferred that Solifugae radiated by the Permian, and most families diverged prior to the Paleogene-Cretaceous extinction, likely driven by continental breakup. We establish Boreosolifugae new suborder uniting five Laurasian families, and Australosolifugae new suborder uniting seven Gondwanan families using morphological and biogeographic signal.

Petalidium karasbergense (Acanthaceae), a new species from Namibia

Petalidium karasbergense, here described as a new species, is only known from the Groot Karasberge (Great Karas Mountains) in southeastern Namibia where it grows on arid hillsides in dwarf shrubland. Diagnostic morphological characters for P. karasbergense include the rigid, tapering and often spinescent distal stems and lateral branchlets, grey, grey-white or grey-black bark (white to cream when young), strigulose, glabrescent vegetative parts, oblanceolate to narrowly obovate leaves, and the free to almost free bracteole pairs (not connate at the base). A comparison of some of the more prominent features to differentiate Petalidium karasbergense from P. parvifolium, its morphologically most similar relative, and P. lucens with which its distribution range marginally overlaps, is provided. Based on IUCN Red List categories and criteria, a conservation assessment of Vulnerable VU D1 is recommended for the new species.

Morphological and molecular study of Syllinae (Annelida, Syllidae) from Bermuda, with the description of five new species.

Although polychaetes from the Bermuda Archipelago have been studied since the beginning of the twentieth century, syllids have been particularly neglected in this area, which is surprising considering this family is usually a dominant group in marine benthic ecosystems. To fill this knowledge gap, we have carried out an extensive analysis of Bermudan Syllidae, combining morphological and molecular data including four nuclear and mitochondrial markers (cytochrome c oxidase subunit I, 18S rRNA, 16S rRNA and 28S rRNA). We have identified and established the phylogenetic position of five new species, Haplosyllis anitae n. sp., Haplosyllis guillei n. sp., Haplosyllis larsi n. sp., Haplosyllis vassiae n. sp. and Syllis laiae n. sp., together with Haplosyllis cf. cephalata. Overall, our results extend the knowledge on the diversity of Syllidae in Bermuda, increasing the number of species present in the area to 25. Our results also recover Opisthosyllis and Syllis as non-monophyletic genera, for which traditional diagnostic morphological features do not accurately reflect their evolutionary histories, and thus we propose that these groups should be reorganized based on molecular characters.

A review of the previously monotypic tribe Dibolostethini (Chelodesmidae: Chelodesminae) with description of two new species and a summary of the Chelodesmidae of the Tropical Andes Biodiversity Hotspot

The chelodesmid genus Dibolostethus Hoffman, 2009, the sole member of the tribe Dibolostethini, is reviewed. The genus contains the type species D. sicarius Hoffman, 2009 known only from the Los Rios Province, Ecuador, and two new species from the Tropical Andes, D. inopinatus Means, Bouzan & Ivanov sp. nov. from the Morona-Santiago Province, Ecuador and D. kattani Means, Bouzan, Martínez-Torres & Ivanov sp. nov. from the Valle del Cauca Department, Colombia. We redescribe D. sicarius and provide a revised diagnosis of the genus, images of diagnostic morphological characters, and a key to the males of Dibolostethus. In addition, we provide a summary and a distribution map of the Chelodesmidae of the Tropical Andes Biodiversity Hotspot.

The complete mitochondrial genome and description of a new cryptic Brazilian species of Metopiellus Raffray (Coleoptera: Staphylinidae: Pselaphinae).

Metopiellus Raffray, 1908 is a genus of South American rove beetles typically found in tropical humid forests. Here we describe a new cryptic species from Eastern Amazon, in northern Brazil, Metopiellus crypticus Asenjo sp. nov., and its major morphologic diagnostic features, which were photographed and illustrated. In addition, we bring the complete mitochondrial genome sequence of M. crypticus sp. nov., and its position within the phylogenetic context of the family, including previously available mitogenomes of Staphylinidae species.

DNA barcoding of recently diverging legume genera: Assessing the temperate Asian Caragana (Fabaceae: Papilionoideae)

AbstractObtaining reliable species identification of the legume genus Caragana has been challenging. Until now, species identification was mostly carried out utilizing diagnostic morphological characteristics, in addition to some successful applications of secondary chemical compounds. This study was designed to establish a DNA barcoding protocol enabling unambiguous identification of 238 accessions belonging to 67 species of Caragana. The performance of four DNA barcoding regions nrITS, trnH‐psbA, matK, and rbcL was explored using three analytical approaches, Pairwise Genetic Distance, Sequence Similarity and Phylogenetic Tree method. The chloroplast regions rbcL and matK showed lower discriminatory power compared with the nuclear region internal transcribed spacer (ITS) and the chloroplast region trnH‐psbA. The nrITS outperformed the other regions in the resolution rate. The present study brings forth an efficient barcode locus for Caragana. A barcode based either on a single‐locus nrITS or the combination of nrITS and trnH‐psbA was found to be most suitable for species discrimination with distinctive barcoding gaps. An attempt has also been made to resolve taxonomic issues in the Caragana opulens complex. DNA barcoding tools when complemented with alpha taxonomic evidence can aid in solving complex systematic problems, especially when taxa are characterized by overlapping traits, such as species belonging to the Fabaceae family.

Notes from the taxonomic disaster zone: Evolutionary drivers of intractable species boundaries in an Australian lizard clade (Scincidae: Ctenotus).

Genomic-scale datasets, sophisticated analytical techniques, and conceptual advances have disproportionately failed to resolve species boundaries in some groups relative to others. To understand the processes that underlie taxonomic intractability, we dissect the speciation history of an Australian lizard clade that arguably represents a "worst-case" scenario for species delimitation within vertebrates: the Ctenotus inornatus species group, a clade beset with decoupled genetic and phenotypic breaks, uncertain geographic ranges, and parallelism in purportedly diagnostic morphological characters. We sampled hundreds of localities to generate a genomic perspective on population divergence, structure, and admixture. Our results revealed rampant paraphyly of nominate taxa in the group, with lineages that are either morphologically cryptic or polytypic. Isolation-by-distance patterns reflect spatially continuous differentiation among certain pairs of putative species, yet genetic and geographic distances are decoupled in other pairs. Comparisons of mitochondrial and nuclear gene trees, tests of nuclear introgression, and historical demographic modelling identified gene flow between divergent candidate species. Levels of admixture are decoupled from phylogenetic relatedness; gene flow is often higher between sympatric species than between parapatric populations of the same species. Such idiosyncratic patterns of introgression contribute to species boundaries that are fuzzy while also varying in fuzziness. Our results suggest that "taxonomic disaster zones" like the C. inornatus species group result from spatial variation in the porosity of species boundaries and the resulting patterns of genetic and phenotypic variation. This study raises questions about the origin and persistence of hybridizing species and highlights the unique insights provided by taxa that have long eluded straightforward taxonomic categorization.

Integrative Taxonomy of the Bubble Snails (Cephalaspidea, Heterobranchia) Inhabiting a Promising Study Area: The Coastal Sicilian Faro Lake (Southern Italy)

The worldwide diffused bubble snails, Haminoeidae, although characterized by an extreme morphological homogeneity, display the most diverse radiation inside the order Cephalaspidea. This hidden diversity within the family Haminoeidae was recently unraveled by molecular studies, which helped to understand the evolutionary history of this group by clarifying some aspects of its systematics. In fact, the type genus Haminoea W. Turton and Kingston (1830) was proved to be polyphyletic and, consequently, the genus Haminoea sensu stricto was restricted to the Mediterranean, Atlantic and East Pacific species, with the Mediterranean Haminoea hydatis Linnaeus (1758) as the type taxon. However, at the specie rank, many aspects need to be clarified, especially concerning the Mediterranean fauna. Due to low reliability of macro-morphological characters, the minimal quantity of molecular data currently available on Mediterranean specimen adds to the lack of molecular comparison in most reports. Based on such considerations, Haminoea species from an interesting Mediterranean study area, Faro Lake, a Sicilian coastal lake that is considered a hot spot for both alien and endemic marine Heterobranchia, have been studied using an integrative taxonomic approach. Eleven Mediterranean specimens belonging to four Haminoea bubble snails have been collected, identified and compared with samples from other localities, integrating ecological, morphological, anatomical (reproductive apparatus) and molecular data. Based on molecular investigations carried out on three different molecular markers (H3, 16S and COI), the morphological identifications of the species collected in the Faro Lake have been confirmed, and 37 new sequences are provided for future comparisons. Furthermore, results from this integrative systematic study shed light on the phylogenetic relationships occurring in this group of bubble snails that could be useful in identifying valid diagnostic morphological characters. Haminoea hydatis and H. navicula were confirmed to be close to each other, with H. orteai as sister to them and with H. orbignyana as the basal taxon. Given external morphological features are unreliable with species identification in Haminoea genus open questions on the geographical distribution of the species and on their ranges of intraspecific variability have yet to be addressed and further in-depth studies are needed. Finally, the presence of three sympatric Haminoea species, two of which are considered native or long-time naturalized, along with other occasional congeneric species, and the absence of the introduced invasive Haloa japonica, reflects both the resilience and stochastic space-temporal dynamics of Faro Lake. This confirms it as an inexhaustible source of case-studies.

First record of \(\textit{Opisthotropis durandi}\) Teynié, Lottier, David, Nguyen & Vogel, 2014 (Squamata: Natricidae) from Vietnam

We provide the first country record of Opisthotropis durandi Teynié, Lottier, David, Nguyen & Vogel, 2014 from Vietnam based on a single snake specimen from Dien Bien province. The species previously was only known from the Lao People’s Democratic Republic (Laos). DNA sequence data of a male specimen from Vietnam match those of one a specimen of O. durandi from Phongsali province, Laos, and the newly collected individual from Vietnam also corresponds O. durandi in terms of diagnostic morphological features, except for a slightly higher ventral number (185 versus 177−181).

Crocus heuffelianus-A New Species for the Bulgarian Flora from Series Verni (Iridaceae).

In the Pirin Mountains, at an elevation of around 1000 m, three populations of a new species of Bulgarian flora from the genus Crocus, series Verni, were discovered. The species was compared to the morphologically related C. veluchensis, and presented with diagnostic morphological and anatomical features. Despite the high degree of morphological similarity, the molecular analysis, which included sequences from all related species (C. cvijicii, C. dalmaticus, C. jablanicensis, C. rujanensis, C. sieberi subsp. atticus, and C. veluchensis), distinguished the Pirin Mountains' populations, and revealed the closest relationship to C. heuffelianus. Despite the C. heuffelianus/C. verni complex's uncertain taxonomic status, our findings on the local population, based on morphometric, anatomical, molecular, and geographic analyses, indicate its belonging to the putative allotetraploid C. heuffelianus of south-eastern Europe and the Balkans, and an expansion of its range to the southeast. Given the taxonomic uncertainty and unclear phylogenetic relationships of the taxa in the Crocus vernus complex, we considered it appropriate to accept our taxon as Crocus heuffelianus. So far, only C. tommasinianus Herb. has been found in Bulgarian flora from the Crocus series Verni, but in terms of altitude and morphological features, the species from our collection is close to the Balkan endemic C. veluchensis, which belongs to the C. sieberi aggregate. Morphologically, it differs by the dark, heart-shaped spots on the tip of the tepals, and the presence of one bract. A detailed comparative anatomical analysis between the three species of crocuses from the series Verni in Bulgaria shows discrete differences: the width of the white stripe and lacunar area are good distinguishing features, as are the number of conducting vessels.

Description of a new moray eel (Anguilliformes: Muraenidae) from the Philippines, with a preliminary assessment of genetic and morphological variations of the Uropterygius concolor species complex.

Uropterygius concolor Rüppell, the type species of the genus Uropterygius, is a small, uniformly brown moray considered to be widely distributed in the Indo-Pacific region. However, a recent study indicated that the real U. concolor is currently known only from the type locality in the Red Sea, and species recorded outside the Red Sea may represent a species complex that comprises several species. In this study, we assess the genetic and morphological variations of this species complex based on available data. Analyses of cytochrome c oxidase subunit I sequences revealed at least six distinct genetic lineages recognized under 'U. concolor'. After carefully comparing the morphologies, one of the lineages is described herein as a new species, Uropterygius mactanensis sp. nov., based on 21 specimens collected from Mactan Island, Cebu, Philippines. Another distinct lineage is considered to be a possibly undescribed species based on diagnostic morphological characters. Although the taxonomic status of junior synonyms of U. concolor and some lineages still remain unresolved, this study provides informative morphological characters (i.e., tail length, trunk length, vertebrae number, and arrangement of teeth) that can be used in future studies on this species complex.

Development of a real-time PCR (qPCR) method for the identification of the invasive paddle crab Charybdis japonica (Crustacea, Portunidae).

Crabs can be transported beyond their native range via anthropogenic-mediated means such as aquarium trade, live seafood trade and shipping. Once introduced into new locations, they can establish persisting populations and become invasive, often leading to negative impacts on the recipient environment and native species. Molecular techniques are increasingly being used as complementary tools in biosecurity surveillance and monitoring plans for invasive species. Molecular tools can be particularly useful for early detection, rapid identification and discrimination of closely related species, including when diagnostic morphological characters are absent or challenging, such as early life stages, or when only part of the animal is available. In this study, we developed a species-specific qPCR assay, which targets the cytochrome c oxidase subunit 1 (CO1) region of the Asian paddle crab Charybdis japonica. In Australia, as well as many parts of the world, this species is considered invasive and routine biosecurity surveillance is conducted to reduce the risk of establishment. Through rigorous testing of tissue from target and non-target species we demonstrate that this assay is sensitive enough to detect as little as two copies per reaction and does not cross amplify with other closely related species. Field samples and environmental samples spiked with C. japonica DNA in high and low concentrations indicate that this assay is also a promising tool for detecting trace amounts of C. japonica eDNA in complex substrates, making it a useful complementary tool in marine biosecurity assessments.

Leaf epidermal characteristics of Annonaceae Juss. and its taxonomic evidence in Nigeria and the Cameroons

AbstractThis study describes the comprehensive micromorphology and taxonomic evidence of 28 species of Annonaceae from Nigeria and the Cameroons using light microscopy to provide additional anatomical and morphological diagnostic characters to complement the systematics boundaries of the infrafamilial and tribal clades. The epidermal cell shape varies from polygonal to irregular on both or either surface except Annona reticulata with isodiametric on the adaxial surface. The anticlinal wall patterns are either undulated, straight, or curved in the family. The constant generic feature encountered includes hypostomata which are mostly paracytic except in Cananga odorata, Isolona zenkeri, Uvaria angolensis and Letestudoxa bella possessing pericytic, 1 + 2 laterocytic and stephanocytic, respectively. Hemiparacytics, brachyamphiparacytic and brachyparacytic stomata, which are variables of paracytic are also present. These stomata complexes proved useful in species delimitation and diagnostic of the family Annonaceae. Other foliar epidermal features were crystals of different shapes and sizes mainly of druses and styloid, unicellular trichome type, and anticlinal wall pattern. The pattern of affinity among the species suggested evidence of similarity and differences in the micromorphological characters, which cumulated to the distinct identification of each species. Based on the most reliable characters within the family, the k‐means cluster, distance matrix, correlation coefficient, and UPGMA dendrogram tree were constructed.

Description of the larva of Hypsilara (Coleoptera: Elmidae).

The mature larva of the Larainae riffle beetle genus Hypsilara Maier & Spangler, 2011 is described here for the first time, based on larvae of Hypsilara autanai Laššová, Čiampor Jr, Čiamporová-Zaťovičová, 2014. The larvae were collected with adults in the stream near the tepui Cerro Autana and Cerro Cuao (southwestern Venezuela) and associated together using DNA barcoding. Larvae of Hypsilara strongly resemble those of Phanoceroides, here we present important morphological diagnostic characters. This description complements the descriptions of the Larainae larvae in the Neotropics, as the larva of Hypsilara was the last one of the group missing so far.

A new species of the genus Ceriodaphnia Dana, 1853 (Cladocera: Daphnidae) from Eastern Siberia (Russia) that combines morphological features of two species groups.

Taxa of the genus Ceriodaphnia Dana, 1853 (Cladocera: Daphniidae) are ubiquitous in temperate and tropical lakes, and the taxonomy of the genus is confused. Moreover, present keys are often regional and insufficient for the taxonomic assignment of species at a global scale. This communication is aimed at improving our understanding of the C. dubia s.l. species group. We redescribe C. dubia s.l. from Northern Eurasia and describe a new species from Central Yakutia (Eastern Siberia, Russia). In contrast to typical members of the C. dubia group, C. nikolaii sp.nov. has the postabdomen of the parthenogenetic female with preanal margin slightly or strongly projecting and angulated. Moreover, adult males have a pronounced preanal angle and sensory seta of antenna I which is shorter than the longest easthetasc. Our finding challenges current definitions of species groups in Ceriodaphnia. Indeed, a postabdomen shape with a strongly projected preanal angle is characterstic of another group of this genus, namely the C. laticaudata-group. We found a taxon that combines the diagnostic morphological characters of two species groups. Further development of the genus taxonomy must be accompanied by redescriptions of all well-accepted and dubious taxa from their type localities and revisions of populations from other localities of the world.

Ferula ermenekense (Apiaceae), an interesting new species from Southern Anatolia in the eastern Mediterraenean Basin

Ferula ermenekense is described and illustrated as a new species from Karaman province in South Anatolia, Turkey. Ferula ermenekense is morphologically close to F. lycia, F. duranii and F. pisidica. In this study, the diagnostic morphological features, distribution, conservation status, habitat and ecological characteristics of the new species are discussed. Micromorphological characteristics of F. ermenekense, F. lycia, F. duranii and F. pisidica mericarps are also examined and compared by using LM and SEM analyses.

A new species of Centaurea sect. Acrocentron (Asteraceae, Cardueae) from Iran

Centaurea serowensis Negaresh, a new species of C. sect. Acrocentron from the West Azerbaijan Province of NW Iran, is described and illustrated. Diagnostic morphological characters of this and closely related taxa are discussed and presented. The ecology and conservation status of the new species are discussed. The geographic distribution of the new species and closely related species is also presented and mapped. In addition, a taxonomic key to the species of C. sect. Acrocentron in Iran is provided.