Migratory Fish Research Articles

Genetic divergence and one-way gene flow influence contemporary evolution and ecology of a partially migratory fish.

Recent work has revealed the importance of contemporary evolution in shaping ecological outcomes. In particular, rapid evolutionary divergence between populations has been shown to impact the ecology of populations, communities, and ecosystems. While studies have focused largely on the role of adaptive divergence in generating ecologically important variation among populations, much less is known about the role of gene flow in shaping ecological outcomes. After divergence, populations may continue to interact through gene flow, which may influence evolutionary and ecological processes. Here, we investigate the role of gene flow in shaping the contemporary evolution and ecology of recently diverged populations of anadromous steelhead and resident rainbow trout (Oncorhynchus mykiss). Results show that resident rainbow trout introduced above waterfalls have diverged evolutionarily from downstream anadromous steelhead, which were the source of introductions. However, the movement of fish from above to below the waterfalls has facilitated gene flow, which has reshaped genetic and phenotypic variation in the anadromous source population. In particular, gene flow has led to an increased frequency of residency, which in turn has altered population density, size structure, and sex ratio. This result establishes gene flow as a contemporary evolutionary process that can have important ecological outcomes. From a management perspective, anadromous steelhead are generally regarded as a higher conservation priority than resident rainbow trout, even when found within the same watershed. Our results show that anadromous and resident O. mykiss populations may be connected via gene flow, with important ecological consequences. Such eco-evolutionary processes should be considered when managing recently diverged populations connected by gene flow.

Accurately predicting rare and poorly detectable species habitat for spatial protection

Abstract With the loss of biodiversity worldwide, understanding species distribution is essential for species management, but modelling the distribution of rare and poorly detectable species can be challenging because of data gaps and observer biases. Over‐ or under‐predictions are frequent, leading to uncertainty in spatial management measures, particularly for highly mobile and data‐poor species. Here we developed a ‘Combined Model for Accurate Prediction’ to accurately predict the distribution of data‐poor and rare species. This modelling framework aims to improve the accuracy of both predicted ‘core’ and ‘unsuitable’ habitats, to help support managers with spatial protection measures. We tested the combined modelling approach on 11 data‐poor and rare diadromous fish during their at‐sea life history phase and used the combined model to analyse the adequacy of existing marine protected areas (MPAs) for these fish. The combined modelling approach modelled both ‘core’ and ‘unsuitable’ habitats with high accuracy. Of the seven diadromous species modelled, most MPAs designated to protect diadromous fish are outside their core habitats. Furthermore, when their core habitat was within an MPA, only 50% of this area was designated to protect them. These results highlight inadequate protection of the existing networks of MPAs for protected and threatened species. Synthesis and applications. Being able to accurately model species distribution is critical to reliable and transparent biodiversity and conservation assessments. By modelling accurate ‘core’ and ‘unsuitable’ habitats with models that minimise omission and commission rates respectively, conservation measures could be targeted in specific spatial areas that maximise the protection of rare and poorly detected species. This method therefore helps minimise impacts on stakeholders, while providing managers with increased confidence in the model predictions.

A Pilot Study on the Diel Vertical Migration Pattern of Mesopelagic Fishes in the Southern and Central South China Sea

The diel vertical migration of mesopelagic fishes in the southern (S-May station and S-Nov station) and central (C-Jun station and C-Dec station) South China Sea was investigated through a series of continuous field surveys conducted in May, June, November, and December 2017. These surveys employed a combination of mid-water trawl and acoustics techniques. The diel migration process, vertical distribution, acoustic migration proportion, and migration pattern of mesopelagic fishes were analyzed. The results revealed that mesopelagic fishes initiated an upward migration before sunset, with the process concluding within 30–120 min after dark. Subsequently, they commenced a downward migration before dawn, which terminated within 10–50 min after sunrise. The mesopelagic deep-sea layers of mesopelagic fishes at the S-May, S-Nov, C-Jun, and C-Dec stations ranged from 360 to 700 m, 350 to 680 m, 350 to 520 m, and 300 to 700 m, respectively. The acoustic migration proportions of mesopelagic fishes at the corresponding stations were found to be approximately 44.5%, 25.7%, 29.8%, and 58.0%, respectively. There were seasonal and regional differences in the vertical migration and distribution patterns of mesopelagic fishes in the South China Sea. A total of 228 species were identified, including 203 fish species, 23 cephalopod species, and 2 shark species. Among these, a subset of 43 fish and cephalopod species exhibited extensive diel vertical migrating behavior. Specifically, this subset comprised 23 lanternfish species, 8 cephalopod species, and 12 other fish species. Lanternfishes were the predominant diel vertical migratory species, while cephalopods also played a significant role in diel vertical migration. The diel migration behavior was found to be slight for Diaphus lucidus, Melamphaes microps, Argyropelecus affinis, and six other fish species. Non-migratory behavior was observed in Sternoptyx obscura, Argyropelecus sladeni, Sternoptyx diaphana, and 13 other fish species. The diel migration habits of 178 additional species of fish, cephalopods, and sharks could not be definitively determined.

Thermal stratification characteristics and cooling water shortage risks for pumped storage reservoir–green data centers under extreme climates

Utilizing the thermal stratification of reservoirs to obtain cold water for cooling green data centers (GDCs) is a new mode of energy conservation and emission reduction. However, global warming is expected to alter this phenomenon in deep reservoirs and thus may affect the digitalization process. While the frequency and intensity of extreme climate (EC) events are increasing under a changing climate, the impacts of these highly destructive events on thermal stratification and the related cascading effects on GDC cold-water supplies are still unclear. A two-lateral-dimensional thermohydrodynamic model was established to determine the characteristics of reservoir thermal stratification changes and its potential water environment impacts based on the heat extreme experienced by the Jinshuitan Reservoir, a large, pumped storage power station (PSPS) with a GDC in southeastern China. Fourteen different PSPS inlet/outlet schemes under 2 climate scenarios were designed, and two new indexes, namely, the risk index of cold-water shortage and the index of thermal stratification, were proposed to explore the impact of extreme climates on GDC water extraction. The results showed that compared to the present climate conditions, the reservoir experienced stronger thermal stratification with a 20.6 % average increase in thermal stability, a longer thermal stratification duration with a transitional trend from seasonal to permanent stratification, and a thinner cold-water layer with a 15-m average decrease. Changes in the thermal stratification of reservoirs under EC conditions will benefit some species, such as diatoms (except for early July and the period from mid-August to early October), green algae and cyanobacteria and the migration of warm-water fish, but adversely impact dissolved oxygen, diatoms and cold-water fish. Furthermore, the risk of cold-water shortages under EC conditions was consistently greater than that under average climate (AC) conditions (traditional assessment) when the elevation of pumped storage intake/outlet was less than 145 m. According to the traditional assessment method, the intake/outlet elevation of pumped storage reservoirs resulted in a 60.27 % increase in the risk of cold-water shortages during climate extremes. Furthermore, the demand for green cold-water withdrawal and optimal pumped storage power generation benefits were met when the PSPS intake/outlet elevation was 145 m. Beyond solving this specific case, this study elucidates the importance of linking the thermal stratification and data center of cold-water withdrawal to ECs. These findings provide new insights for increasing climate change resilience.

Discovery and Genomic Characterization of a Novel Hepadnavirus from Asymptomatic Anadromous Alewife (Alosa pseudoharengus).

The alewife (Alosa pseudoharengus) is an anadromous herring that inhabits waters of northeastern North America. This prey species is a critical forage for piscivorous birds, mammals, and fishes in estuarine and oceanic ecosystems. During a discovery project tailored to identify potentially emerging pathogens of this species, we obtained the full genome of a novel hepadnavirus (ApHBV) from clinically normal alewives collected from the Maurice River, Great Egg Harbor River, and Delaware River in New Jersey, USA during 2015-2018. This previously undescribed hepadnavirus contained a circular DNA genome of 3146 nucleotides. Phylogenetic analysis of the polymerase protein placed this virus in the clade of metahepadnaviruses (family: Hepadnaviridae; genus: Metahepadnavirus). There was no evidence of pathology in the internal organs of infected fish and virions were not observed in liver tissues by electron microscopy. We developed a Taqman-based quantitative (qPCR) assay and screened 182 individuals collected between 2015 and 2018 and detected additional qPCR positives (n = 6). An additional complete genome was obtained in 2018 and it has 99.4% genome nucleotide identity to the first virus. Single-nucleotide polymorphisms were observed between the two genomes, including 7/9 and 12/8 synonymous vs nonsynonymous mutations across the polymerase and surface proteins, respectively. While there was no evidence that this virus was associated with disease in this species, alewives are migratory interjurisdictional fishes of management concern. Identification of microbial agents using de novo sequencing and other advanced technologies is a critical aspect of understanding disease ecology for informed population management.

Phylogenomics, Lineage Diversification Rates, and the Evolution of Diadromy in Clupeiformes (Anchovies, Herrings, Sardines, and Relatives).

Migration independently evolved numerous times in animals, with a myriad of ecological and evolutionary implications. In fishes, perhaps the most extreme form of migration is diadromy, the migration between marine and freshwater environments. Key and longstanding questions are: how many times has diadromy evolved in fishes, how frequently do diadromous clades give rise to non-diadromous species, and does diadromy influence lineage diversification rates? Many diadromous fishes have large geographic ranges with constituent populations that use isolated freshwater habitats. This may limit gene flow among some populations, increasing the likelihood of speciation in diadromous lineages relative to non-diadromous lineages. Alternatively, diadromy may reduce lineage diversification rates if migration is associated with enhanced dispersal capacity that facilitates gene flow within and between populations. Clupeiformes (herrings, sardines, shads and anchovies) is a model clade for testing hypotheses about the evolution of diadromy because it includes an exceptionally high proportion of diadromous species and several independent evolutionary origins of diadromy. However, relationships among major clupeiform lineages remain unresolved and existing phylogenies sparsely sampled diadromous species, limiting the resolution of phylogenetically-informed statistical analyses. We assembled a phylogenomic dataset and used multi-species coalescent and concatenation-based approaches to generate the most comprehensive, highly-resolved clupeiform phylogeny to date, clarifying associations among several major clades and identifying recalcitrant relationships needing further examination. We determined that variation in rates of sequence evolution (heterotachy) and base-composition (non-stationarity) had little impact on our results. Using this phylogeny, we characterized evolutionary patterns of diadromy and tested for differences in lineage diversification rates between diadromous, marine, and freshwater lineages. We identified thirteen transitions to diadromy, all during the Cenozoic Era (ten origins of anadromy, two origins of catadromy, and one origin of amphidromy), and seven losses of diadromy. Two diadromous lineages rapidly generated non-diadromous species, demonstrating that diadromy is not an evolutionary dead-end. We discovered considerably faster transition rates out of diadromy than to diadromy. The largest lineage diversification rate increase in Clupeiformes was associated with a transition to diadromy, but we uncovered little statistical support for categorically faster lineage diversification rates in diadromous versus non-diadromous fishes. We propose that diadromy may increase the potential for accelerated lineage diversification, particularly in species that migrate long distances. However, this potential may only be realized in certain biogeographic contexts, such as when diadromy allows access to ecosystems in which there is limited competition from incumbent species.

Comparative Analysis of Enzymatic Activities and Transcriptional Profiles of Various Hepatic Enzymes between Male and Female Yellowfin Tuna (Thunnus albacares)

Yellowfin tuna (Thunnus albacares) is a valuable pelagic migratory fish with potential for aquaculture. Despite this, there is limited understanding of the biological and physiological characteristics of this species, particularly regarding sex differences in growth performance. The liver, a crucial organ for digestion and metabolism, plays a significant role in regulating fish growth. This study aimed to compare liver enzyme activities and transcriptome profiles between female and male yellowfin tuna to uncover the molecular mechanisms underlying difference between the sexes. The results revealed that female yellowfin tuna exhibited higher amylase and lipid metabolism enzyme activities, while male yellowfin tuna showed higher glucose-6-phosphate dehydrogenase and antioxidant enzyme activities. Additionally, through Illumina sequencing technology, the study generated 37.74 Gb of clean data and identified 36,482 unique genes (UniGenes) in the liver transcriptome. A total of 2542 differentially expressed genes were found, with enriched Gene Ontology terms and pathways related to metabolic processes, particularly lipid metabolism and transport. These findings suggest that female yellowfin tuna have superior digestive enzyme activities and lipid metabolism, while male yellowfin tuna excel in sugar metabolism, ATP production, and antioxidant defense. This study provides valuable insights into sex differences in yellowfin tuna and could aid in advancing full-cycle aquaculture practices for this species.

Assessing the response of marine fish communities to climate change and fishing.

Globally, marine fish communities are being altered by climate change and human disturbances. We examined data on global marine fish communities to assess changes in community-weighted mean temperature affinity (i.e., mean temperatures within geographic ranges), maximum length, and trophic levels, which, respectively, represent the physiological, morphological, and trophic characteristics of marine fish communities. Then, we explored the influence of climate change and fishing on these characteristics because of their long-term role in shaping fish communities, especially their interactive effects. We employed spatial linear mixed models to investigate their impacts on community-weighted mean trait values and on abundance of different fish lengths and trophic groups. Globally, we observed an initial increasing trend in the temperature affinity of marine fish communities, whereas the weighted mean length and trophic levels of fish communities showed a declining trend. However, these shift trends were not significant, likely due to the large variation in midlatitude communities. Fishing pressure increased fish communities' temperature affinity in regions experiencing climate warming. Furthermore, climate warming was associated with an increase in weighted mean length and trophic levels of fish communities. Low climate baseline temperature appeared to mitigate the effect of climate warming on temperature affinity and trophic levels. The effect of climate warming on the relative abundance of different trophic classes and size classes both exhibited a nonlinear pattern. The small and relatively large fish species may benefit from climate warming, whereas the medium and largest size groups may be disadvantaged. Our results highlight the urgency of establishing stepping-stone marine protected areas to facilitate the migration of fishes to habitats in a warming ocean. Moreover, reducing human disturbance is crucial to mitigate rapid tropicalization, particularly in vulnerable temperate regions.

Managing water gate operation and fish passage facilities in irrigated systems of the Nam Kam River, Thailand

AbstractThe migration of fishes through the Thoranit Naruemit water gate on the Nam Kam River, a tributary of the Mekong River in Thailand, was studied to understand the hydrological factors and improve the operational regime of the fish pass at the structure. Migration of fish from the Mekong River started in May, at the onset of the rainy season. During 60 days of operation, the fish pass supported the upstream migration of 83 species and ~440,000 fish, equivalent to about 11 tonnes of fish. The fish pass supported migration of a range of fish sizes between 45 and 700 mm, and most fish were larger than the size of first maturity for the species in question. The factors influencing migration into the Nam Kam included the lunar cycle, flow in the fish pass, water level in the river and flow variability. Migration tended to increase in the 3–4‐day period before or after a full moon. Discharge and water level changes associated with rising water levels in the Mekong River synchronize with the spawning season of most Mekong fish and trigger upstream migration. Many fish migrated through the pass at discharges through sluice gates between 8 and 323 m3/s and with a flow through the fish pass between 0.95 and 3.08 m/s. Restrictions to fish migration were found and recommendations for water gate and fish pass operation are provided.

Local environmental conditions structured discrete fish assemblages in Arctic lagoons

AbstractRapid changes in sea ice extent and changes in freshwater inputs from land are rapidly changing the nature of Arctic estuarine ecosystems. In the Beaufort Sea, these nearshore habitats are known for their high productivity and mix of marine resident and diadromous fishes that have great subsistence value for Indigenous communities. There is, however, a lack of information on the spatial variation among Arctic nearshore fish communities as related to environmental drivers. In summers of 2017–2019, we sampled fishes in four estuarine ecosystems to assess community composition and relate fish abundance to temperature, salinity, and wind conditions. We found fish communities were heterogeneous over larger spatial extents with rivers forming fresh estuarine plumes that supported diadromous species (e.g., broad whitefish Coregonus nasus), while lagoons with reduced freshwater input and higher salinities were associated with marine species (e.g., saffron cod Eleginus gracilis). West–East directional winds accounted for up to 66% of the community variation, indicating importance of the wind-driven balance between fresh and marine water masses. Salinity and temperature accounted for up to 54% and 37% of the variation among lagoon communities, respectively. Recent sea ice declines provide more opportunity for wind to influence oceanographic conditions and biological communities. Current subsistence practices, future commercial fishing opportunities, and on-going oil and gas activities benefit from a better understanding of current fish community distributions. This work provides important data on fish spatial distributions and community composition, providing a basis for fish community response to changing climatic conditions and anthropogenic use.

Dams trigger exponential population declines of migratory fish.

The impact of dams on global migratory fish stocks is a major challenge and remains seriously underestimated. China has initiated a dozen fish rescue programs for the dams on the Yangtze River, focusing on five flagship species-Chinese sturgeon, Chinese paddlefish, Yangtze sturgeon, Chinese sucker, and Coreius guichenoti. Despite 40 years of effort, these five fishes are on the verge of extinction. Here, we propose an analytical tool that includes a framework of fish migration taxonomy and six life cycle models, the concepts of invalid stock and the dam impact coefficient, and a simplified population model. We then clarify the migration patterns and life cycles of these fishes and show that the Yangtze dams have severely disrupted the life cycle integrity of these species, causing seven types of invalid stocks and their exponential population declines. Last, we discuss six scientific misjudgments underpinning the fish rescue programs and recommend reforms to China's fish rescue strategy.

Challenges in downstream dam passage and the effect of dam removal on Atlantic salmon (Salmo salar) smolt migrations.

Migration is critical for life-cycle completion in diadromous fish species. River connectivity is vital in facilitating these large-scale movement events, but the extent of present-day river fragmentation can interfere with these migrations. Fish passage solutions (FPSs) are commonly implemented with the aim of improving river connectivity. In our study, we investigated the performance of two types of FPSs, spill regimes and complete dam removal, on Atlantic salmon (Salmo salar) smolt migrations. We used acoustic telemetry to monitor migration behavior and passage success of 120 wild smolts released in three different groups/sites: one group with two dams to pass to reach the river mouth, a second group with one dam to pass, and a control group without any barriers to pass (upstream of a recently removed hydroelectric dam). Smolt passage probabilities were similar for the two studied dams (87% and 86%) but showed variation in path choice, delay times, and loss rates. Passage success was influenced by several factors, such as body size, diel period, and water temperature, but not flow. Cumulative passage success to the river mouth was 61%, with most individuals being lost within lentic river stretches, either in the forebays of hydroelectric power stations or in naturally wide river stretches. Within the recently rehabilitated river sections (post dam removal), passage speeds were significantly faster than all other sections of the river (post-rehabilitation x¯ = 56.1 km/day) with significantly faster speeds compared to pre-rehabilitation (pre-x¯ = 28.0 km/day). Our findings provide valuable information on the benefits of dam removal and highlight the need for further rehabilitation measures in upriver reaches where barriers still affect downstream passage.

Ecological Study of The Seven-Gill Eel Based on The Lotka-Volterra Model and Simulations

Seven-gill eels are migratory fish with a unique sex-determination mechanism, where the growth rate of juveniles determines the sex of adults. To explore the interactions of sevengill eels with the ecosystem, we first studied their habits and collected growth data. Then, we modelled the "marine-freshwater" migration of sevengill populations using a difference-in-differences approach and referring to the Lotka-Volterra model concept. In addition, we developed a model of "sevengill-prey" coexistence in the ocean through an intelligent body-based modelling approach and MATLAB simulations. The model incorporates factors such as human fishing, migration, stochastic events and interspecific competition, and is applicable to the same species.

Swimming behaviour of downstream migrating carp in accelerating flows

The downstream migration of fish is impacted by accelerating flow. This study coupled computational fluid dynamics (CFD) modelling and laboratory observations to investigate the effects of two different accelerating flow hydrodynamics on the swimming behaviours of two fish species. The silver carp (Hypophthalmichthys molitrix) and bighead carp (Hypophthalmichthys nobilis) were chosen as target fish species and four hydrodynamic parameters were selected as main indicators to affect fish swimming behaviours. Four specific swimming behaviours were classified in the contraction flume based on fish downstream trajectories. The results indicated that high accelerating flow, low turbulent kinetic energy (Tke ) and shear stress generated the symmetric distribution of fish along two boundaries of the contraction flume. It also indicated that discharge increase would increase the fish entrainment risk from intakes to diversion pipe, while two fish species exhibited different swimming behaviour patterns. Velocity and velocity gradient had more significant effects than other hydrodynamic parameters on fish swimming strategies. There was mutual compensation among fish tail-beat frequency, angle and amplitude. The results illustrated the relationship between the swimming behaviours and hydrodynamics, which could contribute to understanding the fish downstream migration behaviours in accelerating flow.

Enhancing migratory potential in fish passes: The role of pier shape in minimizing debris accumulation

Biodiversity preservation is a primary challenge of the 21st century, focusing on restoring unobstructed river flows and mitigating the effects of barriers, supported by European biodiversity strategies up to 2030. Maintaining ecological continuity, such as unblocking fishways clogged by floating debris disrupting natural fish migration paths, remains a challenge despite conventional protective methods. This study, taking a vertical slot fish pass in Wrocław on the Odra River as a case study and based on research on bridge piers, suggests modifying pier shapes from rectangular to rounded in order to reduce debris accumulation. Field studies, utilizing an OTT MF Pro flow meter, were conducted to validate the numerical model. The measured flow rate in the field was 3.15 [m³·s−1], while the numerical modeling yielded a flow of 3.19 [m³·s−1]. Focusing on optimizing the shape of cross-wall piers to enhance fish migration conditions, the study examined six different pier configurations, analyzing flow speed in the main slot, crucial for migration. Using 2D hydraulic modeling with Iber, it assessed the migratory potential of different pier designs by analyzing hydraulic conditions and comparing them with the swimming capabilities of fish species native to the Odra River. Results indicate that rounding the pier edges positively affects flow speeds in the main slot, enhancing fish migration possibilities, contributing to fish pass functionality improvement and supporting broader biodiversity and ecosystem health goals.

Unveiling the gut bacteriome diversity and distribution in the national fish hilsa (Tenualosa ilisha) of Bangladesh.

The field of fish microbiome research has rapidly been advancing, primarily focusing on farmed or laboratory fish species rather than natural or marine fish populations. This study sought to reveal the distinctive gut bacteriome composition and diversity within the anadromous fish species Tenualosa ilisha (hilsa), which holds the status of being the national fish of Bangladesh. We conducted an analysis on 15 gut samples obtained from 15 individual hilsa fishes collected from three primary habitats (e.g., freshwater = 5, brackish water = 5 and marine water = 5) in Bangladesh. The analysis utilized metagenomics based on 16S rRNA gene sequencing targeting the V3-V4 regions. Our comprehensive identification revealed a total of 258 operational taxonomic units (OTUs). The observed OTUs were represented by six phyla, nine classes, 19 orders, 26 families and 40 genera of bacteria. Our analysis unveiled considerable taxonomic differences among the habitats (freshwater, brackish water, and marine water) of hilsa fishes, as denoted by a higher level of shared microbiota (p = 0.007, Kruskal-Wallis test). Among the identified genera in the gut of hilsa fishes, including Vagococcus, Morganella, Enterobacter, Plesiomonas, Shigella, Clostridium, Klebsiella, Serratia, Aeromonas, Macrococcus, Staphylococcus, Proteus, and Hafnia, several are recognized as fish probiotics. Importantly, some bacterial genera such as Sinobaca, Synechococcus, Gemmata, Serinicoccus, Saccharopolyspora, and Paulinella identified in the gut of hilsa identified in this study have not been reported in any aquatic or marine fish species. Significantly, we observed that 67.50% (27/40) of bacterial genera were found to be common among hilsa fishes across all three habitats. Our findings offer compelling evidence for the presence of both exclusive and communal bacteriomes within the gut of hilsa fishes, exhibiting potential probiotic properties. These observations could be crucial for guiding future microbiome investigations in this economically significant fish species.

How fish populations in Lake Bafa (Western Anatolia) respond to ecological shifts

Abstract Long‐term biodiversity monitoring is crucial for freshwater ecosystems as it enables the detection of even subtle changes and biodiversity trends, guiding conservation efforts and ensuring the sustainability of these vital habitats. Despite becoming more commonly considered in the field of freshwater ecology and biological invasions, studies using long‐term time series from Türkiye's freshwater resources have remained scarce. To assess the availability of data and ultimately present a baseline for future efforts, we combined published museum records and samples from recent field studies from the highly anthropogenically‐altered Lake Bafa in Western Anatolia covering the period 1958–2019. Lake Bafa has a very diverse aquatic ecosystem, providing habitat for both freshwater and saltwater species, and is one of the allottees in Türkiye's inland fish production. In the current study, we investigated how fish populations in Lake Bafa were affected by environmental changes and examined changes in taxonomic and functional diversity of non‐native species over time. The analyses revealed—concomitant to an increase in native marine and freshwater species richness—an increase in non‐native species richness over time. Non‐native species did not interfere with native species' niche space, whereas applied models indicate that in this highly altered ecosystem, foremost temperature and salinity shaped the fish community over time, limiting the impacts of non‐native species. These results have implications for the fishery of the lake, which includes highly valuable catadromous fish species, highlighting the value and importance of collecting long‐term data in Türkiye to better understand both invasion dynamics and changes in the naturality of Turkish ecosystems. These findings further underline the importance of long‐term data to create new management strategies for the lake and to start restoration processes, thus improving fisheries management.

Ecological stoichiometric of C, N and P of Coilia species

Fish of the Coilia genus play a crucial ecological role by serving as a vital link between marine and freshwater ecosystems. To gain a comprehensive understanding of the ecological patterns, intra-interspecific variations, and potential determinants of Coilia from an ecological stoichiometry perspective, analyzed the concentrations of C, N, and P elements in various types of Coilia, including C. nasus, C. mystus, C. grayii, C. brachygnathus, and C. nasus taihuensis, across the Yangtze River basin. The result shows that: 1) A broad spectrum of eco-stoichiometric patterns within Coilia species, facilitating their adaptation to diverse ecosystems, including seawater and freshwater. Specifically, the C content in Coilia species from 40% to 70%, while N% and P% range between 4%–12% and 0.5%–3%, respectively. 2) Intriguingly, interspecific variations in eco-stoichiometric patterns are predominantly driven by anadromous populations. The anadromous Coilia species, including C. nasus, C. mystus, and C. grayii, exhibit significantly higher C contents and C/N, C/P, and N/P ratios compared to their landlocked and freshwater counterparts (C. nasus taihuensis and C. brachygnathus). However, the trends in N and P content are reversed. 3) Intraspecific differences vary among Coilia species, notably observed in C. nasus taihuensis and C. brachygnathus, where there's minimal correlation with body size. Conversely, C. nasus and C. mystus demonstrate a substantial influence of body size, with increasing fish size associated with higher C content, C/N, C/P, and N/P ratios, while N and P content decrease. This suggests that larger fishes store more energy (C%) in preparation for reproductive migration. In conclusion, this study provides a scientific foundation for comprehending the ecological patterns and intra-interspecific variations in Coilia. Furthermore, it contributes to the application of ecological chemometrics in the study of migratory fish, enriching our understanding of the intricate dynamics within this ecologically significant species.

Otolith biogeochemistry reveals possible impacts of extreme climate events on population connectivity of a highly migratory fish, Japanese Spanish mackerel Scomberomorus niphonius

Otolith biogeochemistry reveals possible impacts of extreme climate events on population connectivity of a highly migratory fish, Japanese Spanish mackerel Scomberomorus niphonius

Assessment of the impact of chemical pollution on endangered migratory fish in two major rivers of France, including spawning grounds

Water pollution is a one of the most contributors to aquatic biodiversity decline. Consequently, ecological risk assessment methods have been developed to investigate the effects of existing stresses on the environment, including the toxic effects of chemicals. One of the existing approaches to quantify toxic risks is called “Potentially Affected Fraction of species” (PAF), which estimates the potential loss of species within a group of species studied. In this study, the PAF method was applied to the Garonne catchment (southwest France) due to the limited information available on the involvement of water pollution in the decline of diadromous fish populations. This approach was used to quantify the potential toxic risk associated with chemical contamination of water for fish species. The objectives were to quantify this risk (1) in the Garonne and Dordogne rivers and (2) in the spawning grounds of two endangered anadromous fish species: the allis shad and the European sturgeon during the development period of their early life stages. Environmental pollution data was provided for 21 sites within the Garonne catchment between 2007 and 2022, and toxicity data was obtained specifically from freshwater toxicity tests on fish species. Then, for each site and each year, the potential toxic risk for a single substance (ssPAF) and for a mixture of substances (msPAF) was calculated and classified as high (>5 %), moderate (>1 % and < 5 %) or low (<1 %). Potential toxic risks were mostly moderate and mainly associated with: metals > other industrial pollutants and hygiene and care products > agrochemicals. In summary, this study highlights the probable involvement of water contamination on the decline, fate and restoration of diadromous fish populations in the Garonne catchment, focusing notably on the toxic effects on early life stages, a previously understudied topic.