Atherosclerosis is defined as a focal, inflammatory, and fibro-proliferative response to endothelial injury. The development of atheromatous lesions in the coronary tree is predominantly a quiescent asymptomatic process without any clinical manifestations. The unpredictable and acute nature of cardiovascular complications such as vulnerable plaque rupture makes diagnosis and treatment of this disease an outstanding medical challenge. We investigate non-invasive techniques that facilitate mechanical measurements at the microscopic level, which can then be directly correlated to biomarker localization within lesion sites. To characterize these sites in vitro, we used time-resolved scanning acoustic microscopy (TRSAM). This technique allows for non-invasive interrogation of tissue samples with optical resolution at the micrometer scale. Furthermore, we combined TRSAM with micro-Raman (micro-RS) spectroscopy to investigate plaque morphology with regard to specific biomarkers. We characterized mechanoelastic and biochemical regions containing high cholesterol, phosphate, and carbonate apatite that are characteristic of atherosclerotic lesions. The mechanoelastic evaluation of these regions was determined using TRSAM. Calcified lesions, for example, exhibit ultrasonic velocities of 1810 m/s ± 25 m/s and are more rigid and stiffer than normal blood vessel tissues.