Abstract Riparian ecosystems comprise less than 2% of the landscape in the arid western United States, yet they provide habitat and resources to over half of arid‐land wildlife species, including a broad diversity of anurans (frogs and toads). Despite this, relatively few studies describe riparian herpetofaunal communities in the Southwest, and remote wilderness areas are particularly undersurveyed. We employed passive acoustic monitoring to capture anuran advertisement calls in wilderness area tributaries of the Verde River, Arizona, USA. In the spring and summer of 2021 and 2022, 13–29 autonomous recording units (ARUs) were deployed along perennial, intermittent and ephemeral tributary stream reaches. We characterized sites based on the per cent of pool, riffle, run and side channel habitat within 100 m of each ARU and quantified substrate, wetted channel width and canopy cover. To relate anuran occupancy to environmental and hydrological variables, we evaluated acoustic detection data using single‐species, single‐season occupancy models. Four species were detected in this study: canyon treefrog (Hyla arenicolor), red‐spotted toad (Anaxyrus punctatus), Woodhouse's toad (Anaxyrus woodhousii) and non‐native American bullfrog (Lithobates catesbeianus), with canyon treefrog being the most ubiquitous species observed. Vocal activity of canyon treefrog was higher at perennial and intermittent sites compared to ephemeral sites, and the presence of pools was most strongly associated with canyon treefrog occupancy. Persistent, slow‐moving water best predicted the presence of breeding canyon treefrogs. Notably, this study did not detect several species with historical records in the middle Verde River catchment, including Arizona toad (Anaxyrus microscaphus) and northern leopard frog (Lithobates pipiens). Given climate change‐related flow declines and intensifying demands for water in arid lands globally, maintaining stream flows that provide consistent and suitable hydroregimes for anuran breeding and larval development is of increasing importance. Determining habitat use and flow regimes necessary to support anuran populations can aid in prioritization of conservation actions related to water management and predict how changes in water availability may impact stream‐breeding anurans.