Transport network design problem (TNDP) is a well-studied problem for planning and operations of transportation systems. They are widely used to determine links for capacity enhancement, link closures to schedule maintenance, identify new road or transit links and more generally network enhancements under resource constraints. As changes in network capacities result in a redistribution of demand on the network, resulting in changes in the congestion patterns, TNDP is generally modelled as a bi-level problem, which is known to be NP-hard. Meta-heuristic methods, such as Tabu Search Method are relied upon to solve these problems, which have been demonstrated to achieve near optimality in reasonable time. The advent of quantum computing has afforded an opportunity to solve these problems faster. We formulate the TNDP problem as a bi-level problem, with the upper level formulated as a Quadratic Unconstrained Binary Optimization (QUBO) problem that is solved using quantum annealing on a D-Wave quantum computer. We compare the results with Tabu Search. We find that quantum annealing provides significant computational benefit. The proposed solution has implications for networks across different contexts including communications, traffic, industrial operations, electricity, water, broader supply chains and epidemiology.