Polyoxometalates (POMs) are esteemed for their remarkable stability and exceptionally high proton conductivity, rendering them ripe for extensive exploration owing to their research significance. Herein, we synthesized two bimolybdenum-capped {AlMoVI8MoV6O44} cluster-based coordination polymers through a solvothermal method. Single-crystal X-ray diffraction analysis elucidates that H[(H2bimb)3(AlMoVI8MoV6O44)] [bimb = 1,4-bis(imidazole-1-ylmethyl)benzene, compound 1] is the POMs-organic supramolecular structure. The introduction of zinc ions into the reaction environment facilitated the connection of initially dispersed ligands, which yielded the well-ordered structure H3[Zn2(bimb)4(AlMoVI8MoV6O44)]·4H2O (compound 2) with a layer distance of 11.8 Å. The proton conductivities (σ) of two compounds were measured under conditions of 85 °C and 98% relative humidity (RH), resulting in values of 3.89 × 10-2 and 4.76 × 10-2 S·cm-1, respectively. This study presents a novel approach to fabricating POMs as proton conductors through structural design and manufacturing adjustments.