The intelligent approaches emerge as leading techniques in providing of stable and high performance control of industrial plants with nonlinearity, model uncertainty, variables coupling and disturbances. In the present research a novel approach for the design of a nonlinear model-free fuzzy logic controller (FLC) with two inputs – the system error and the main measurable disturbance and a rule base for disturbance compensation is suggested. It is based on off-line parameter optimisation via genetic algorithms. The approach is applied for the development of a FLC for the control of the level of ammonia brine solution in a carbonisation column with compensation of the changes in the inflow pressure. The control algorithm is implemented in a general purpose industrial programmable logic controller in ”Solvay Sodi” SA – Devnya, Bulgaria. The FLC system with disturbance compensation outperforms in an increased dynamic accuracy the FLC with the system error as a single input even when linear feedforward disturbance compensation is added. The performance of all systems is assessed from the real time control and the simulations based on a derived TSK plant model.