Microplastics (MPs) are emerging contaminants that are attracting increasing interest from researchers, and the safety of drinking water is greatly affected by their transportation during filtration. Polystyrene (PS) was selected as a representative MPs, and three filter media (quartz sand, zeolite, and anthracite) commonly found in water plants were used. The retention patterns of PS-MPs by various filter media under various background water quality conditions were methodically investigated with the aid of DLVO theory and colloidal filtration theory. The results show that the different structures and elemental compositions of the three filter media cause them to exhibit different surface roughnesses and surface potentials. A greater surface roughness of the filter media can provide more deposition sites for PS-MPs, and the greater surface roughness of zeolite and anthracite significantly enhances their ability to inhibit the migration of PS-MPs compared with that of quartz sand. However, surface roughness is not the only factor affecting the migration of MPs. The lower absolute value of the surface potential of anthracite causes the DLVO energy between it and PS-MPs to be significantly lower than that between zeolite and PS-MPs, which results in stronger retention of PS-MPs by anthracite, which has a lower surface roughness, than zeolite, which has a higher surface roughness. The transport of PS-MPs in the medium is affected by the combination of the surface roughness of the filter media and the DLVO energy. Under the same operating conditions, the retention efficiencies of the three filter materials for PS-MPs followed the order of quartz sand < zeolite < anthracite. Additionally, the conditions of the solution markedly influenced the transport ability of PS-MPs within the simulated filter column. The transport PS-MPs in the simulated filter column decreased with increasing solution ionic strength and cation valence. Naturally, dissolved organic matter promoted the transfer of PS-MPs in the filter layer, and humic acid had a much stronger facilitating impact than fulvic acid. The study findings might offer helpful insight for improving the ability of filter units ability to retain MPs.