ABSTRACT This study assesses the first approach regarding the origin, level of contamination, and spatial and vertical distribution of aliphatic and polycyclic aromatic hydrocarbons in coastal sediments of Arica’s Bay. Twenty-seven aliphatic hydrocarbons (AHs) and eighteen polycyclic aromatic hydrocarbons (PAHs) were studied at three depths in sediment cores collected from six locations in the coastal bay. The spatial distribution pattern of the molecular composition of aliphatic and aromatic hydrocarbons is consistent with the directions of the ocean currents from the northeast to the southwest. PAHs are mainly correlated with anthropogenic input sources to the bay. The total aliphatic hydrocarbons showed a wide concentration range from 112.07 to 2,382.43 ng·g−1 dry wt. while total PAHs ranged from 8.01 to 85.40 ng·g−1 dry wt. The vertical distribution of the total AHs shows a tendency to concentrate between 10–20 and 20–30 cm depth. Specific diagnostic characterisation ratios suggest that the bay sediments mainly consist of a mixture of autochthonous, predominantly marine sources composed of marine bacteria (n-C16, n-C18, and C20) and terrestrial plant derivatives (n-C29 and n-C31) and with a contribution of petrogenic hydrocarbons masked by biogenic hydrocarbons. The vertical distribution of the total polycyclic aromatic hydrocarbons is dominated by low molecular weight (LMW) PAHs of two and three rings, such as fluoranthene (FLT), phenanthrene (PHE), pyrene (PYR), and the highest concentrations are found between 10 and 20 cm depth of the sediment column. The PAH diagnostic ratios revealed a mixture of pyrogenic hydrocarbons (biomass and coal combustion) with petrogenic compounds from the Port of Arica and its neighbouring areas. According to the guidelines of UNEP for AHs and PAHs categorisation, the bay’s sediments may be classified from harmless to harmful due to AHs composition and low PAHs pollution.