The Choushui River Alluvial Fan (CRAF) is a major agricultural area in Taiwan with heavy groundwater usage. The extraction of groundwater here has caused land subsidence, which is now a significant global environmental issue. This study analyzes land subsidence in the CRAF by integrating hydrogeological data from 233 groundwater monitoring stations across four aquifers (CRAF Groundwater_NET) and data from 50 continuous GNSS stations (CRAF GNSS_NET). We developed an automated processing flow for GNSS static surveying within CRAF GNSS_NET, and further employed a time-series fitting method to examine the long-term trends and annual changes for both GNSS and groundwater level data. Our analysis of the time-series data from the past decade identifies areas of significant groundwater level depletion and subsidence hotspots. We explore the relationship between groundwater level variations and surface displacements within CRAF, utilizing GNSS data to analyze horizontal and vertical displacement trends, as well as annual changes. We integrate these findings with hydrogeological data to understand regional subsidence patterns. Our results indicate that CRAF is characterized by distinct hydrogeological features. The study finds that the amplitudes of annual changes in both groundwater level and vertical displacement generally increase from northeast to southwest in the analyzed region. One particular area shows significant groundwater level decline, with the most severe rate recorded at 0.54 m/year. Similarly, GNSS analysis indicates pronounced subsidence trends in the same area, with rates ranging from 4.2 to 5.2 cm/year. These findings highlight the critical need for the development of effective groundwater management strategies to ensure sustainable use of groundwater resources and to implement mitigation measures against land subsidence in similar multiple-aquifer settings.