CsCl Density Gradient Centrifugation Research Articles

Sheep intelectin-2 co-purifies with the mucin Muc5ac from gastric mucus

Secretion of gastric mucins plays an essential role in host protection, and modifications in mucus properties are characteristic of the protective immune responses to pathogens. This study describes the purification and characterisation of sheep gastric mucins, and identification of those proteins that co-purify with mucins, with the potential to modify mucus properties. Gastric mucus was collected and pooled from four abattoir sheep and separated by CsCl density gradient centrifugation. Proteomic analysis of the mucin-containing fraction indicated the presence of gastric mucin (Muc5ac) and several co-purifying proteins, including intelectin-2 (Itln2). Further experimentation indicated that a combination of denaturation and reduction was required to fully release Itln2 from gastric mucin. A putative correlation was found between mucin-bound intelectin concentration and rheological properties in further sheep gastric mucus samples. In conclusion, this study provides the first characterisation of sheep gastric mucins and their purification partners, revealing potentially important mucin-intelectin interactions.

Mucin from rheumatoid arthritis synovial fluid enhances interleukin-6 production by human peripheral blood mononuclear cells

The carbohydrate chains represented by mucins (MUCs) are expressed by a variety of normal and malignant secretory epithelial cells and induce a variety of immunoreactions. To find new mucins related to the pathogenesis of rheumatoid arthritis (RA), we examined high-molecular-weight molecules inducing cytokines on human peripheral blood mononuclear cells (PBMCs) in synovial fluid from affected joints. We found a high-molecular-weight substance that induces interleukin 6 production on PBMCs in RA synovial fluid on gel filtration. MUC-1 was present in the resulting fractions, although they had been purified by CsCl density gradient centrifugation. We also found that MUC-1 was expressed on synovial cells and infiltrating inflammatory mononuclear cells on the sublining layer and lymphoid follicles in RA synovial tissues. CD68-positive superficial synovial cells colocalized with MUC-1 and CD68-positive macrophages were in contact with MUC-1-positive mononuclear cells. These findings imply that mucins, including MUC-1, may be related to immunoinflammatory reactions in the pathogenesis of RA.

Monosaccharide composition of fundic and duodenal mucins in sheep infected with Haemonchus contortus or Teladorsagia circumcincta

The effects on the monosaccharide composition of fundic and duodenal mucins of parasitism by Haemonchus contortus or Teladorsagia circumcincta were investigated in sheep at 4, 6 and 9 months of age. Infected sheep were euthanased at days 21 and 28 post-infection respectively, together with uninfected controls. Fundic and duodenal mucins were purified by gel filtration and CsCl density gradient centrifugation and monosaccharides were released by heating at 95 °C for 6 h in 2 M HCl. Thin-layer chromatography identified fucose, glucosamine, galactose and galactosamine in both mucins, as well as very small amounts of sialic acids. Neither N-acetylglucosamine nor N-acetylgalactosamine was present, as these are deacetylated during acid hydrolysis to glucosamine and galactosamine, respectively. Fucose, glucosamine, galactose and galactosamine were separated and quantified by High Performance Anion Exchange Chromatography on a CarboPac PA-20 column. Sialic acids were determined by the thiobarbiturate assay. Over the age range of 4–9 months, the principal changes in the monosaccharide composition of mucins in non-infected sheep were increasing fucosylation and decreasing sialylation, as observed in other mammals. In duodenal mucins, there was a statistically significant increase in fucosylation and a decrease in sialylation ( p = 0.043 and 0.014, respectively), while similar trends were seen in fundic mucins. Other modifications with age in sheep mucins were decreased acetylglucosamine (N-acetylglucosamine) in the fundus and galactosamine (N-acetylgalactosamine) in the duodenum. The effects of H. contortus and T. circumcincta infection on fundic mucin monosaccharide composition were not identical, although both parasites decreased fucosylation and sialylation. Both parasites caused the same effects on duodenal mucins, however, these differed from the changes in the fundus. H. contortus infection increased the proportions of glucosamine and galactose in fundic and duodenal mucins, respectively. Mucins from the fundus of H. contortus-infected sheep had similar monosaccharide profiles at all ages, but this was not the case for T. circumcincta, in which there were lesser changes on mucins in 9 months old sheep, apart from decreased sialylation. This may indicate immunity to T. circumcincta from previous exposure in the field. The effect on duodenal mucins was similar for the two infections (decreased sialic acids, fucose and N-acetylgalactosamine and increased galactose), suggesting it may result from the immune response to the presence of worms in the abomasum. Mucin profiles from organs more accessible than the gastrointestinal tract may be useful markers for the host immune response and identify resistant, resilient or susceptible individuals.

Use of Inorganic and Organic Nitrogen by Synechococcus spp. and Diatoms on the West Florida Shelf as Measured Using Stable Isotope Probing

The marine nitrogen (N) cycle is a complex network of biological transformations in different N pools. The linkages among these different reservoirs are often poorly understood. Traditional methods for measuring N uptake rely on bulk community properties and cannot provide taxonomic information. (15)N-based stable isotope probing (SIP), however, is a technique that allows detection of uptake of individual N sources by specific microorganisms. In this study we used (15)N SIP methodology to assess the use of different nitrogen substrates by Synechococcus spp. and diatoms on the west Florida shelf. Seawater was incubated in the presence of (15)N-labeled ammonium, nitrate, urea, glutamic acid, and a mixture of 16 amino acids. DNA was extracted and fractionated using CsCl density gradient centrifugation. Quantitative PCR was used to quantify the amounts of Synechococcus and diatom DNA as a function of density, and (15)N tracer techniques were used to measure rates of N uptake by the microbial community. The ammonium, nitrate, urea, and dissolved primary amine uptake rates were 0.077, 0.065, 0.013, and 0.055 micromol N liter(-1) h(-1), respectively. SIP data indicated that diatoms and Synechococcus spp. actively incorporated N from [(15)N]nitrate, [(15)N]ammonium, and [(15)N]urea. Synechococcus also incorporated nitrogen from [(15)N]glutamate and (15)N-amino acids, but no evidence indicating uptake of labeled amino acids by diatoms was detected. These data suggest that N flow in communities containing Synechococcus spp. and diatoms has more plasticity than the new-versus-recycled production paradigm suggests and that these phytoplankters should not be viewed strictly as recycled and new producers, respectively.

Construction of a RU486 inducible recombinant adenoviral vector carrying murine interleukin-12 gene and experimental treatment of colonic carcinoma

To construct a RU486 inducible recombinant adenovirus of murine IL-12 protein and study its effect and safety on colonic cancer. The replication-defective recombinant adenovirus were produced after cotransfection of shutter vector pDC-RUmIL-12 and adenovirus DNA helper plasmid pBHGloxDeltaE1, 3Cre into HEK293 cells. The recombined adenovirus was purified by CsCl density gradient centrifugation and its titer was determined by end point dilution assay. Expression of this regulatable recombinant adenovirus vector in infected C26 colonic carcinoma cells was tested by ELISA kit in vitro. The tumor model was established by hypodermic inoculation of C26 cells. Sixty tumor-bearing mice were randomly divided into 4 groups: Ad-buffer group; Ad-RUmIL-12 group; Ad-RUmIL-12 + RU486 group and Ad-mIL-12 group, and the treatment effects and side effects were evaluated. The adenoviral vector containing murine IL-12 gene was identify by PCR. The viral titer of Ad-RUmIL-12 was 4.62 x 10(10) pfu/ml. The expression of IL-12 protein was induced by the RU486 and the highest expression (516 +/- 43) pg/ml whereas no significant IL-12 protein was detected without inducer or getting rid of the inducer [(38 +/- 3) pg/ml and (42 +/- 5) pg/ml respectively]. The tumor size increased rapidly in group Ad-buffer and group Ad-RUmIL-12 (P > 0.05). Administration of Ad-RUmIL-12 + RU486 and Ad-mIL-12 were showed to delay markedly the growth of transplanted C26 tumor (P > 0.05). Significantly necrosis was observed in both Ad-mIL-12 and Ad-RUmIL-12 + RU486 experimental groups, but the level of the serum alanine transaminase and the rate of side effect was higher in Ad-mIL-12 group (4/15 and 10/15 respectively, P < 0.05). A RU486 regulatable recombinant adenoviral vector containing IL-12 gene was successfully constructed. The expression of vector Ad-RUmIL-12, regulated by inducer RU486 in vivo, can obviously improve safety in tumor treatment and provide a good primer for further researches on in vivo gene therapy.

Microbial biotechnology meets environmental microbiology

The isolation of commercially valuable bacteria from the environment has been a cornerstone of microbial biotechnology for many decades. The environment has yielded organisms capable of producing valuable fermentation products such as alcohols and amino acids, strains able to produce diverse pharmacologically active secondary metabolites, as well as microorganisms that can affect highly selective chemical transformations and convert recalcitrant pollutants into non‐toxic metabolites. As Microbial Biotechnology (sister journal to the now well established Environmental Microbiology) celebrates its first birthday, we would like to speculate upon the way in which the ongoing revolution in the characterization of uncultured environmental microorganisms may facilitate discovery of valuable microbial enzymes and pathways that are currently beyond reach. The great majority of microorganisms in natural environments have never been obtained in pure culture and represent an important source of microbial diversity that biotechnologists cannot ignore. Cloning of environmental DNA (metagenomics) has already emerged as a rich source of new biocatalysts for production of bulk and high‐value chemicals (reviewed in Steele et al., 2009). Metagenomics is reliant on the cloning of genes from complex samples that contain DNA from all manner of organisms, some relevant to the biotechnologist but most otherwise. Hence methodology for specifically increasing the abundance of functional genes (genes encoding key target enzymes) of interest would be of great value in increasing the proportion of the relevant biodiversity that could be accessed. In the sphere of environmental microbiology, stable isotope probing (SIP) techniques employ enrichment cultures containing a 13C‐labelled growth substrate, in which the DNA of organisms growing on the labelled substrate becomes enriched in the heavy isotope and can be separated from bulk environmental DNA by means of CsCl density gradient centrifugation. Originally developed to identify organisms actively metabolizing one‐carbon compounds via analysis of 16S rRNA and functional genes, SIP has since been applied to characterize microorganisms utilizing a wide range of microbiological growth substrates (reviewed in Dumont and Murrell, 2005; Friedrich, 2006). In principle, SIP is ideal for increasing the abundance of target genes for subsequent direct cloning or amplification by means of PCR. A report from Daniel and co‐workers (Schwarz et al., 2006) was the first that indicated the feasibility of such applications. Daniel and co‐workers focused on glycerol dehydratase, a key enzyme during biosynthesis of the valuable product propane‐1,3‐diol. SIP with glycerol‐13C3 led to an increase of up to 3.8‐fold in the frequency of recovery of glycerol dehydratase genes per megabase of cloned environmental DNA, compared with parallel metagenomics experiments where SIP enrichment was not used. While the increase in sensitivity that SIP yielded in this pilot study was modest, we predict that through careful manipulations of enrichment conditions, SIP and related techniques can be developed into a key tool in gene mining. DNA‐SIP would give access to valuable functional genes that are present at very low abundance in inhospitable extreme environments or at low levels in complex ecosystems and which are below the threshold of detection of current technology. This would generate a pool of potentially novel target genes that could then be screened in expression libraries or used in gene shuffling experiments in order to generate novel biocatalysts. In addition, heavy DNA in the SIP experiments will become enriched in the genomes of target organisms, thus allowing focussed or targeted metagenomics, and isolation of potentially novel catabolic (or biosynthetic) gene clusters of biotechnological relevance.

Adenovirus E1A proteins are closely associated with chromatin in productively infected and transformed cells

The adenovirus E1A 243R oncoprotein encodes a potent transcription-repression function within the N-terminal 80 amino acids. Our proposed model of E1A repression predicts that E1A interacts with important cellular proteins on chromatin. Consistent with this idea, we report here that E1A proteins from in vivo formaldehyde cross-linked 293 cells are closely associated with chromatin even after several stringent purification steps including double isopycnic CsCl density gradient centrifugation and size exclusion chromatography. Likewise, E1A proteins expressed from virus during productive infection of HeLa cells are closely associated with chromatin starting at early times after infection. No other adenoviral proteins are necessary for E1A 243R protein to associate with chromatin. Analyses of chromatin from HeLa cells infected with adenovirus vectors expressing E1A 243R protein with deletions in different E1A functional domains indicate that sequences within the E1A N-terminal repression domain are needed for the majority of E1A's interactions with chromatin.

Prevalence of Giardia duodenalis genotypes in adult dairy cows

The prevalence of Giardia duodenalis genotypes was determined in adult dairy cows. Fecal specimens were collected from two farms each in Vermont, New York, Pennsylvania, Maryland, Virginia, North Carolina, and Florida. Specimens, cleaned of fecal debris and concentrated using CsCl density gradient centrifugation, were subjected to PCR and DNA sequence analysis. The prevalence of G. duodenalis infection, ranged from 3% to 64%, with an average prevalence of 27% (144 positive cows out of 541 examined). DNA sequence analysis of the 16S rRNA gene revealed the presence of both Assemblage A and Assemblage E, G. duodenalis. Overall, Assemblage E was present in 25% of all animals tested and Assemblage A was present in 2% of the animals. As a percentage of G. duodenalis isolates, Assemblage E represented 94% and Assemblage A represented 6%. Although, most of the cows were infected with a genotype that is not known to be infectious for humans, adult cows on five farms did harbor varying levels of zoonotic Assemblage A, G. duodenalis. Therefore, although adult cows do not appear to be a significant source of human infectious cysts in the environment, the risk from this age group should not entirely be discounted.

Effects of Fibrillin-1 Degradation on Microfibril Ultrastructure

Current models of the elastic properties and structural organization of fibrillin-containing microfibrils are based primarily on microscopic analyses of microfibrils liberated from connective tissues after digestion with crude collagenase. Results presented here demonstrate that this digestion resulted in the cleavage of fibrillin-1 and loss of specific immunoreactive epitopes. The proline-rich region and regions near the second 8-cysteine domain in fibrillin-1 were easily cleaved by crude collagenase. Other sites that may also be cleaved during microfibril digestion and extraction were identified. In contrast to collagenase-digested microfibrils, guanidine-extracted microfibrils contained all fibrillin-1 epitopes recognized by available antibodies. The ultrastructure of guanidine-extracted microfibrils differed markedly from that of collagenase-digested microfibrils. Fibrillin-1 filaments splayed out, extending beyond the width of the periodic globular beads. Both guanidine-extracted and collagenase-digested microfibrils were subjected to extensive digestion by crude collagenase. Collagenase digestion of guanidine-extracted microfibrils removed the outer filaments, revealing a core structure. In contrast to microfibrils extracted from tissues, cell culture microfibrils could be digested into short units containing just a few beads. These data suggest that additional cross-links stabilize the long beaded microfibrils in tissues. Based on the microfibril morphologies observed after these experiments, on the crude collagenase cleavage sites identified in fibrillin-1, and on known antibody binding sites in fibrillin-1, a model is proposed in which fibrillin-1 molecules are staggered in microfibrils. This model further suggests that the N-terminal half of fibrillin-1 is asymmetrically exposed in the outer filaments, whereas the C-terminal half of fibrillin-1 is present in the interior of the microfibril.

Prevalence and genotypes of Giardia duodenalis in 1–2 year old dairy cattle

To determine the prevalence of Giardia genotypes in 12–24 month old dairy heifers, fecal specimens were collected from two farms each in Vermont, New York, Pennsylvania, Maryland, Virginia, North Carolina, and Florida. Specimens, cleaned of fecal debris and concentrated using CsCl density gradient centrifugation, were subjected to PCR and DNA sequence analysis. Prevalence of Giardia infection, ranged from 11% to 75% on 14 farms with an average prevalence of 36% (204 positive cattle out of 571 examined). DNA sequence analysis of the 16S rRNA gene revealed 91% of the 204 Giardia isolates were Assemblage E, and 9% were Assemblage A. The prevalence of these genotypes varied greatly from farm to farm, with four farms having exclusively Assemblage E Giardia. Overall, Assemblage E was present in 33% of all animals tested and Assemblage A was present in 3% of the animals. Thus, while many of the heifers were infected with a genotype that is not known to be infectious for humans, 1–2 year old heifers on 10 of 14 farms did harbor zoonotic Assemblage A Giardia. Therefore, heifers cannot be overlooked as a potential source of human infectious cysts in the environment, with some farms representing a much higher risk than others.

Protein Kinase C Delta Induces Apoptosis of Vascular Smooth Muscle Cells through Induction of the Tumor Suppressor p53 by Both p38-dependent and p38-independent Mechanisms

Apoptotic death of vascular smooth muscle cells (SMCs) is a prominent feature of blood vessel remodeling. In the present study, we examined the novel PKC isoform protein kinase C delta (PKCdelta) and its role in vascular SMC apoptosis. In A10 SMCs, overexpression of PKCdelta was sufficient to induce apoptosis, whereas inhibition of PKCdelta diminished H2O2-induced apoptosis. Moreover, evidence is provided that the tumor suppressor p53 is an essential mediator of PKCdelta-induced apoptosis in SMCs. Activation of PKCdelta led to accumulation as well as phosphorylation of p53 in SMCs; this induction correlated with apoptosis. Furthermore, blocking p53 induction with small interference RNA or targeted gene deletion prevented PKCdelta-induced apoptosis, whereas restoring p53 expression rescued the ability of PKCdelta to induce apoptosis in p53 null SMCs. We also establish that PKCdelta regulates p53 at both transcriptional and post-translational levels. Specifically, the transcriptional regulation required p38 MAPK, whereas the post-translational modification, at least for serine 46, did not involve MAPK. Additionally, PKCdelta, p38 MAPK, and p53 co-associate in cells under conditions favoring apoptosis. Together, our data suggest that SMC apoptosis proceeds through a pathway that involves PKCdelta, the intermediary p38 MAPK, and the downstream target tumor suppressor p53.

Prevalence and genotypes of Giardia duodenalis in post-weaned dairy calves

To determine the prevalence of Giardia genotypes in post-weaned dairy calves, fecal specimens were collected from 3 to 11-month-old dairy calves per farm on two farms in Vermont, New York, Pennsylvania, Maryland, Virginia, North Carolina, and Florida. Specimens cleaned of fecal debris and concentrated using CsCl density gradient centrifugation were stained and examined by immunofluorescence microscopy and also subjected to PCR and DNA sequence analysis. Overall, PCR provided more sensitive detection than IFA. Prevalence of Giardia infection, as detected by PCR ranged from 20% on NC-2 to 81% on VT-2, with an overall prevalence of 52% (237 positive samples out of 456 total). DNA sequence analysis of the 16S rRNA gene revealed 87% of the 237 Giardia isolates were Assemblage E, and 13% were Assemblage A although the prevalence of these genotypes varied greatly from farm to farm, with five farms having no Assemblage A Giardia. Therefore, Assemblage E was present in 45% of all animals tested and Assemblage A was present in 7% of the animals. Thus, while many of the calves were infected with a genotype that is not known to be infectious for humans, post-weaned calves on nine of 14 farms did harbor Assemblage A Giardia. Therefore calves should be considered as a potential source of human infectious cysts in the environment, with some farms representing a much higher risk than others.

Stable isotope probing of nucleic acids in methanotrophs and methylotrophs: A review

Stable isotope probing (SIP) is a method which attempts to link an organism’s identity with its biological function under conditions approaching those in situ. Addition of 13C labelled substrate to an environmental sample results in 13C labelling of actively dividing bacteria when the 13C labelled substrate is used as a carbon source. The microorganism’s DNA therefore becomes heavier and can be separated by CsCl density gradient centrifugation from 12C DNA of bacteria which have not assimilated labelled substrate. SIP has been applied to study the functionally active methanotroph population in peat soil, acidic forest soil, cave water and soda lake sediments. Studies have analysed both phylogenetic (16S rRNA) and functional ( pmoA, mmoX and mxaF) genes to determine methanotroph diversity. These studies are reviewed here and the advantages and limitations of the SIP technique are discussed.

Dual Phospholipase C/Diacylglycerol Requirement for Protein Kinase D1 Activation in Lymphocytes

The serine/threonine kinase protein kinase D1 (PKD1) is a protein kinase C (PKC) substrate that mediates antigen receptor signal transduction in lymphocytes. PKC phosphorylates serines 744/748 within the PKD1 catalytic domain, and this is proposed to be necessary and sufficient for enzyme activation. Hence, a PKD1 mutant with alanine substituted at positions 744 and 748 (PKD-S744A/S748A) is catalytically inactive. Conversely, a PKD1 mutant with glutamic residues substituted at positions 744 and 748 as phospho-mimics (PKD-S744E/S748E) is constitutively active when expressed in Cos7 or HeLa cells. The present study reveals that Ser-744/Ser-748 phosphorylation is required for PKD1 activation in lymphocytes. However, PKD-S744E/S748E is not constitutively active but, like the wild type enzyme, requires antigen receptor triggering or phorbol ester stimulation. Antigen receptor activation of wild type PKD is dependent on phospholipase C (PLC)/diacylglycerol (DAG) and PKC, whereas PKD-S744E/S748E is only dependent on PLC/DAG but no longer requires PKC. Hence, substitution of serines 744 and 748 with glutamic residues as phospho-mimics bypasses the PKC requirement for PKD1 activation but does not bypass the need for antigen receptors, PLC, or DAG. In lymphocytes, PKD1 is, thus, not regulated by PLC and PKC in a linear pathway; rather, PKD1 activation has more stringent requirements for integration of dual PLC signals, one mediated by PKCs and one that is PKC-independent.

Characterization of Empty Capsids from a Conditionally Replicating Adenovirus for Gene Therapy

As virus vectors for gene therapy approach the goal of successful clinical treatment, it is increasingly necessary for the product to be fully characterized. Empty capsids are perhaps the main extraneous component of recombinant adenovirus (rAd) products that are purified by column chromatography. Two diverse rAd products, one a replication-defective rAd and the other a conditionally replicating rAd, show different protein compositions of their empty capsids. The empty capsid type from the replication-defective rAd carrying the gene for p53 was previously determined to have approximately 1400 copies per particle of pVIII, the precursor to the hexon-associated protein VIII (Vellekamp et al., Hum. Gene Ther. 2001;12:1923-1936). Quantification of this protein is a useful measure of the amount of empty capsids in preparations of this vector. Here we purify and characterize empty capsids from the conditionally replicating rAd. This empty capsid type lacks any appreciable amount of pVIII but contains pVI and multiple forms of the L1 52/55K protein, mostly as disulfidelinked oligomers. Empty capsid from conditionally replicating rAd present new challenges in terms of its quantification, but sodium dodecyl sulfate-polyacrylamide gel electrophoresis densitometry analysis suggests that the amount of this empty capsid in a preparation, like that of rAd p53 empty capsid, declines with increased time of infection. This empty capsid demonstrates heterogeneity by anion-exchange chromatography, electron microscopy, and CsCl density gradient centrifugation.

Prevalence of Giardia duodenalis genotypes in pre-weaned dairy calves

To determine the prevalence of Giardia genotypes in pre-weaned dairy calves, fecal samples were collected from a minimum of 18, 1–7-week-old dairy calves per farm on two farms each in the states of Vermont, New York, Pennsylvania, Maryland, Virginia, North Carolina, and Florida. Samples cleaned of fecal debris and concentrated using CsCl density gradient centrifugation were stained and examined by immunofluorescence microscopy and also subjected to PCR and gene sequence analysis. Prevalence by PCR ranged from 9% on a farm in Pennsylvania to 93% on a farm in Vermont, with an average prevalence for 407 calves on 14 farms of 40%. Gene sequence analysis of the TPI, β-giardin and 16S rRNA genes revealed 85% of the positive samples to be Assemblage E, while 15% were Assemblage A, although the percentages of these genotypes varied greatly from farm to farm. Some farms had no Assemblage A Giardia. Thus, while a majority of the calves were infected with a genotype that is not known to be infectious for humans, calves on 7 of 14 farms did harbor Assemblage A Giardia. Calves should be considered as a potential source of human infectious cysts in the environment.

Age‐related changes in human meniscal glycosaminoglycans

Introduction With an increased human lifespan, a major challenge is now to ensure a concomitant increase in healthspan. Meniscal damage and degradation are common and are strongly correlated with subsequent osteoarthritis. Indeed, meniscal damage has been identified in about 60% of people over 60. Markers of pathology will facilitate intervention but first require normal age‐related changes to be established.Methods Undamaged vascular and avascular regions of medial and lateral human menisci were comminuted and the tissue extracted into 4‐m GuHCl and subject to associative CsCl density gradient centrifugation. Aggrecan and the small leucine rich PGs (SLRPs) were isolated and their GAG profiles examined by HPAEC fingerprinting, following enzyme depolymerization, and by an NMR spectroscopy.Results and discussion Analysis of aggrecan and the SLRPs show that there is a complex and dynamic pattern of KS, CS and DS abundance and distribution within human menisci, which changes with age.The abundance of SLRPs is higher in the avascular than vascular tissues, however, this is not reflected in the abundance of aggrecan which is present at similar levels in both tissue regions. The data show no other significant differences between medial and lateral and between vascular and avascular tissue regions.Analysis of the sulfation pattern of CS following digestion by ACII lyase, shows that in both aggrecan and SLRPs the 4‐sulfation level falls with age from 20 to 35% in young tissues to 10–20% in older. Subsequent analyses following ABC lyase depolymerization, to include DS, shows very significant change with age from CS + DS 4‐sulfation levels of ca. 40–55% in young tissue to ca. 15–30% in older.The difference between these datasets represents the contribution made by 4‐sulfated DS. Thus, analysis of the difference suggests that DS makes a decreasing contribution to the CS/DS profile with age.Indeed, this is confirmed by an NMR analysis of these samples. Analysis of the resonances in the region 1.95–2.2 p.p.m. (ref to TSP) allows the estimation of the contribution made by DS, CS and KS. These data show that, in aggrecan, the contribution made by DS chains falls from ca. 10% in younger tissues to ca. 2–4% in older tissues.NMR analysis also shows that KS levels fall with age from ca. 15–20% in younger tissues to 5–10% in older tissues. Analysis of the structure of the KS chains shows chains with a structure similar to that of in articular cartilage but that at all ages there are very low levels of fucosylation (ca. 1–5%).Previous studies of age‐related changes in CS/DS and KS structures have shown significant changes in the first 17 years of life, with only modest nonpathological changes after that time. These data from meniscal tissues do not show such a dramatic halting of normal age‐related changes. Indeed, the data show gradual age‐related changes in DS, CS and KS abundance and structure throughout life.These baseline age‐related changes data will now allow the analysis of pathology‐related changes.

Age‐related changes in the glycosaminoglycans of human meniscal aggrecan

Introduction Meniscal damage and degradation, which are strongly correlated with subsequent OA, have been identified in approximately 60% of people over 60 years of age. Age‐related changes in articular cartilage glycosaminoglycans (GAGs) have been described, and used to facilitate the study of pathology‐related changes (Plass et al. 1998). However, such data do not yet exist for the meniscus.Materials and methods Undamaged human menisci were obtained following leg amputations, and the vascular and avascular zones of each lateral and medial meniscus were extracted into 4 m GuHCl. Aggrecan was recovered in the A1 fraction following CsCl density gradient centrifugation, and the relative abundance of chondroitin, dermatan and keratan sulphates (CS, DS and KS) was examined by NMR spectroscopy at 400 MHz and 43 °C.Results Human meniscal aggrecan was shown to contain CS, DS and KS, and our data show age‐related changes in the relative abundance of these GAGs. The change was similar for medial and lateral menisci and for the vascular and avascular zones within these.The KS abundance in aggrecan from young menisci (&lt;15 years) was found to be 15–20% of the total GAGs. However, in older samples, it comprised only 7–12% of the GAGs.We have confirmed the presence of DS in human meniscal aggrecan and show that the abundance of DS gradually falls from approximately 16% at 10 years to 2–4% at 75 years. There is some variability between humans, although the trend is clear and for each human there is good agreement between medial and lateral menisci and vascular and avascular locations.The levels of CS comprise the remainder of the GAG attached to aggrecan and contribute the remainder of the GAG abundance. This can be seen to increase from 67 to 72% at 10 years to approximately 90% at 75 years.Discussion Our data show a clear age‐related change in the relative abundance CS, DS and KS from human meniscal aggrecan. The data show a decrease in the abundance of KS and DS and a concomitant increase in CS levels. These observations differ from those widely seen for articular cartilage, in which the levels of CS are seen to fall with age.We have confirmed that DS is a component of human meniscal aggrecan in agreement with previous work (McNicol &amp; Roughley 1980). However, previously reported levels of DS, approximately 20%, are those found only in younger menisci.Absolute levels of these GAGs have not yet been determined, and hence the mechanisms which bring about this relative increase in CS with age may include either changes in biosynthetic output and/or widespread GAG loss in which KS and DS loss increases with age.

Cathepsin S supports acid-independent infection by some reoviruses.

In murine fibroblasts, efficient proteolysis of reovirus outer capsid protein sigma3 during cell entry by virions requires the acid-dependent lysosomal cysteine protease cathepsin L. The importance of cathepsin L for infection of other cell types is unknown. Here we report that the acid-independent lysosomal cysteine protease cathepsin S mediates outer capsid processing in macrophage-like P388D cells. P388D cells supported infection by virions of strain Lang, but not strain c43. Genetic studies revealed that this difference is determined by S4, the viral gene segment that encodes sigma3. c43-derived subvirion particles that lack sigma3 replicated normally in P388D cells, suggesting that the difference in infectivity of Lang and c43 virions is at the level of sigma3 processing. Infection of P388D cells with Lang virions was inhibited by the broad spectrum cysteine protease inhibitor trans-epoxysuccinyl-l-leucylamido-(4-guanidino)butane but not by NH(4)Cl, which raises the endocytic pH and thereby inhibits acid-dependent proteases such as cathepsins L and B. Outer capsid processing and infection of P388D cells with Lang virions were also inhibited by a cathepsin S-specific inhibitor. Furthermore, in the presence of NH(4)Cl, cell lines engineered to express cathepsin S supported infection by Lang, but not c43, virions. Our results thus indicate that differences in susceptibility to cathepsin S-mediated sigma3 processing are responsible for strain differences in reovirus infection of macrophage-like P388D cells and other cathepsin S-expressing cells. Additionally, our data suggest that the acid dependence of reovirus infections of most other cell types may reflect the low pH requirement for the activities of most other lysosomal proteases rather, than some other acid-dependent aspect of cell entry.

RICK activates a NF-kappaB-dependent anti-human cytomegalovirus response.

The adapter kinase receptor interacting protein-like interacting caspase-like apoptosis regulatory protein kinase (RICK, also called RIP2 and CARDIAK) was found to be elevated at both the protein and RNA levels during human cytomegalovirus (HCMV) replication, suggesting either that the virus may require RICK for replication or that RICK is part of an unsuccessful host attempt to inhibit HCMV replication. It is demonstrated here that forced expression of RICK in either a kinase active or inactive form activates nuclear factor (NF)-kappaB by means of its intermediate domain and potently blocks HCMV replication in human fibroblasts. Importantly, NF-kappaB activation, which exerted a modestly positive effect on the early phase of infection, clearly had a strongly negative impact during later viral steps. A stable inhibitor of NF-kappaB (IkappaB) reverses the RICK inhibitory effect, and activation of NF-kappaB by IkappaB kinase beta expression is inhibitory to HCMV, demonstrating that NF-kappaB activation is part of a potent anti-HCMV response. Supernatant transfer experiments identified interferon-beta as a downstream component of the RICK inhibitory pathway. RICK expression was found to synergize with HCMV infection in the induction of interferon-beta expression. This study identifies an endogenous RICK-activated, NF-kappaB- and interferon-beta-dependent antiviral pathway that is either inhibited or faulty under normal HCMV replication conditions; efforts to bolster this pathway may lead to novel anti-viral approaches.