A study of H2D+ ions in their lowest rotational states is presented. The ions are generated in pulsed discharge in liquid N2 cooled He/Ar/H2/D2 gas mixture. Near infrared (NIR) second overtone transitions in the 6459–6467 and 6490–6492 cm−1 (1.540, 1.548 µm) region are used to identify the ions and determine their degree of rotational excitation. The data were obtained using NIR Cavity Ringdown Absorption Spectroscopy (NIR-CRDS). The sensitivity obtained was typically 5 × 10−9 cm−1. The measured second overtone transition frequencies are in good agreement with ab initio predictions with systematic shift −0:1 cm−1. The kinetics and rotational temperatures during discharge period was determined. The absolute number density of H2D+ as a function of H2/D2 mixing ratio is measured and results are compared to previous measurement of D2H+ ion.