Determination of carbohydrates is a challenging and therefore a complex analysis field in phytochemistry. Owing to the high degree of isomerization and epimerization, to the low volatility and to the lack of UV absorbing moieties several analytical techniques cannot be employed without prior modification of target molecules. Additionally within medicinal plants beside carbohydrates several other substances and analytes are present in the produced extract. Aim of this study was the evaluation of different analytical approaches in order to recognize the most suitable technique for qualitative and quantitative analysis of carbohydrates. Focus within the study was placed on thin layer chromatography (TLC), gas chromatography (GC) and a newly developed mass spectrometric method, i.e. matrix free material enhanced laser desorption ionization time of flight mass spectrometry (mf-MELDI-MS) [1]. Samples employed within the study were standards and microwave assisted water extracts from Quercus cortex. TLC was developed using a solvent mixture of butanol:acetic acid:H2O (8:3:2). The visualization of different carbohydrates was performed after reaction with a mixture of acetone – aniline -diphenylamine – phosphoric acid. Mono-, di- and trisaccharides were detected in reference to the carbohydrate standards. Gas chromatography with MS detection has been employed after derivatisation of targets. For di- and tri-saccharides single peaks were obtained, which was not the case for monosaccharides: Glucose for example delivered two signals, but at a constant ratio. Within mf-MELDI-MS from mono- to deca-saccharides clear potassium and sodium adduct signals could be obtained. Evaluation of all three employed techniques clearly proved the performance of mf-MELDI-MS for the qualitative analysis of complex mixtures, as target don't need modification and analysis needs only a few minutes. Beside that GC-MS is suitable for quantitative analysis.